TBGR-Browse-Bju-LTR.LTR-Copia

ID	Class	Order	Superfamily	Length	Start	End	Strand
A01_LTR-Copia_41	Retrotransposons	LTR	LTR-Copia	85	19779306	19779390	-
A01_LTR-Copia_42	Retrotransposons	LTR	LTR-Copia	116	19926428	19926543	-
A01_LTR-Copia_43	Retrotransposons	LTR	LTR-Copia	119	19981699	19981817	+
A01_LTR-Copia_44	Retrotransposons	LTR	LTR-Copia	282	20328862	20329143	+
A01_LTR-Copia_45	Retrotransposons	LTR	LTR-Copia	161	22927039	22927199	+
A01_LTR-Copia_46	Retrotransposons	LTR	LTR-Copia	83	23070540	23070622	+
A01_LTR-Copia_47	Retrotransposons	LTR	LTR-Copia	116	25269178	25269293	-
A01_LTR-Copia_48	Retrotransposons	LTR	LTR-Copia	113	25343428	25343540	-
A01_LTR-Copia_49	Retrotransposons	LTR	LTR-Copia	110	25577824	25577933	-
A01_LTR-Copia_50	Retrotransposons	LTR	LTR-Copia	113	25787286	25787398	-
A01_LTR-Copia_51	Retrotransposons	LTR	LTR-Copia	269	25788041	25788309	-
A01_LTR-Copia_52	Retrotransposons	LTR	LTR-Copia	266	25930888	25931153	+
A01_LTR-Copia_53	Retrotransposons	LTR	LTR-Copia	194	28715943	28716136	-
A01_LTR-Copia_54	Retrotransposons	LTR	LTR-Copia	385	28833320	28833704	+
A01_LTR-Copia_55	Retrotransposons	LTR	LTR-Copia	182	29426140	29426321	-
A01_LTR-Copia_56	Retrotransposons	LTR	LTR-Copia	103	29825704	29825806	+
A01_LTR-Copia_57	Retrotransposons	LTR	LTR-Copia	83	29957692	29957774	-
A01_LTR-Copia_58	Retrotransposons	LTR	LTR-Copia	222	31142710	31142931	-
A01_LTR-Copia_59	Retrotransposons	LTR	LTR-Copia	85	31143644	31143728	-
A01_LTR-Copia_60	Retrotransposons	LTR	LTR-Copia	138	31149082	31149219	-

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

85

Start:

19779306

End:

19779390

Strand:

-

>A01_LTR-Copia_41

CAAAACCTTCAGGTTGTTTCATGTAAATTTCCTCTTCTAAATCACCATTTAGAAAAGCAGTTTTTACATCCATTTGATGGATTTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

116

Start:

19926428

End:

19926543

Strand:

-

>A01_LTR-Copia_42

ACATCCATCTGGTGAACTTCCCAGTTATTTGAAGCAATTATTTTCAAAAGACTTCGAACAGTAGTCATCTTCGCAACAGGCGCGAAAGTCTCATCATAATCAGCTCCTGCCTTCTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

119

Start:

19981699

End:

19981817

Strand:

+

>A01_LTR-Copia_43

AGATCAGATAATGGAGGAGAATACACAAGCCATGCTTTCAAACAACACTTAGTCAAACATTGGGTGATTCACTAAACTAGCTACCCATACACACCACAACAAAATGGCTTAGCTGAGAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

282

Start:

20328862

End:

20329143

Strand:

+

>A01_LTR-Copia_44

TGTGGCGAGAGGGTTTACTCAAAGAGAAGGAATTGATTATGAAGAAGTGTTTGCACCGGTTGTGAAACACATATCAATTCGAGTACTAATGTCAGTGGTTGTGAATCATGATTTGGAGTTGGAACAAATGGATGTAAAAACAGCGTTTTTGCATGGGAATCTTGAGCAAGAGTTATACATGTAACAACCTGAAGGGTTCGAAGTGAATCCTGGTAAAGATCAAGTATGCTTACTAAAGAAGTCGCTGTATGGACTGAAGCAGGCTCCAAGACAATGGAACAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

161

Start:

22927039

End:

22927199

Strand:

+

>A01_LTR-Copia_45

TACCTCCAGGCAAGCATCCGGTTGGATGTAAGTGGGTGTATACCATCAAGTTCAACCCTGATGGTACTATTGAGAGATTCAAAGCGCGTTTGGTTGGTAAAGGATACACACAGATTGAAGGACTTGACTATATAGATACGTTTTCTCCGGTGGCGAAGATG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

83

Start:

23070540

End:

23070622

Strand:

+

>A01_LTR-Copia_46

GATAATCAATCTGCAATTGCTTTGACAAGGAATCCTGTATTTCATGGAAGAAGCAAGCACATTCATACTCGATATCATTTCAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

116

Start:

25269178

End:

25269293

Strand:

-

>A01_LTR-Copia_47

TGCCATGAACTCCACCTCACATGAAGAAAGTGCTACAGTGGGTTGCTTACACGATGTCCATGTGATCGGCGAAGTTCCAAGGTAGAACATAAACCATGTCGTGCTTCTTCCATCAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

113

Start:

25343428

End:

25343540

Strand:

-

>A01_LTR-Copia_48

AAGACTTCATCATAATCAATACCTTGTTTCTGAACATATTCTTTTGCAACTAGCTGTGCCTTGTACTTGATTATGCTACCATCTGCATTCCTCTTAACCGTAAACACTTATTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

110

Start:

25577824

End:

25577933

Strand:

-

>A01_LTR-Copia_49

ATAATCAATACCCTGTTGTGACTGAATCCTTTTGCAACAAGACGTGCCTTGAATCTATCAACCGAGCCATCAGCTTTTCTCTTGATTGTAAATACCCATTTACAACCAAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

113

Start:

25787286

End:

25787398

Strand:

-

>A01_LTR-Copia_50

ACTCAGCTTCACAAGACGATAAGGCCACTGTCTCCTGCTTATGAGAGCTCCAAGTAATGGGACATTCTGCATAATAGAATACATGTCCTGATGTACTCCGGCCATCATCTTCA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

269

Start:

25788041

End:

25788309

Strand:

-

>A01_LTR-Copia_51

AGACCATAGAGCGCCTTGTTTAGCTTATATACTTTGTTTTCCTGTCCTTTAACCACATACCCTTGCGGTTGACACACAAACACTTCTTCCTTTAGATCACCGTGTAGGAATGCTGTCTTGACATCTAAATGATGAATCTGCCAACCCTTTGATGCTGCCAAAGCAATGATAAACCGCACTGTCTCAATTCTTGCCACTGGTGCGAAGACTTCGTCGAAGTCAATGCCGTGTCTCTGTATATAGCCCTTCGCGACTAACCTTGCTTTGAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

266

Start:

25930888

End:

25931153

Strand:

+

>A01_LTR-Copia_52

AGGTTAGTAGCTAAGGGATACATTCAAAGACACGGTGTAGATTATGAAGAAGTCTTCTCTCCTGTGGCGCGAATAGAGACTCTACGTCTCATCATAGCAGTAGCAGCTTCAAGAGGATGGCAAGTGCATCACCTGGATGTTAAGATAGCCTTTCTCAACGGTGAGCTAAAAGAAAACGTTTACGTATGTCAACCTGAGGGTTATGTAGTCAAAGGAAGTGAAGAGAAGGTTTACAAGCTTAAAAAGGCGTTGTATGGCTTGAAACA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

194

Start:

28715943

End:

28716136

Strand:

-

>A01_LTR-Copia_53

AAAGACTTCCTCATAGTCAACTCCATGTCTTTGAACATAGCCTTTTGCTACCAAGCGTGCTTTGTATTTACTGATACTCCCATCGGCGTTTCTCTTGATTTTGAACACCCATTTTAAACCTATAGGTTTAAATCCTTTAGGTAACTCGACGAGTGTCCAAGTATTGTTTCTCTCTATCGATCGTATCTCTTCCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

385

Start:

28833320

End:

28833704

Strand:

+

>A01_LTR-Copia_54

CCAGTTGGATACAAATGGGTCTTTGTGAGGAAAAGAAATGAACATGGTGAAATCGTGAGATATAAAGCACGGTTTGTTGCACAAGGATTCTCACAGAGACCAGGAATCGATTATGAGGAAATATATTCCCCTGTGGTGGATGCTACTACTTTTAGATTCCTGATAAGTCTGGCTATAAGAGAAAACTTAGACTTGCGGTTAATGGATGTAGTAACTGCATACTTATATGGTCCAGTGGATAATGAAATTTATATGAAAGTTCCAGAGGGTATTGAATTAAAAACAAAGAGAGTTCTTGAGAACAACATTGTATAAAGTTGAATAAGTCACTTTATGGATTGAAACAATCAGGTCGAATGTGGTACAATAGACTAAGTGAGTACCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

182

Start:

29426140

End:

29426321

Strand:

-

>A01_LTR-Copia_55

TTAAAACCCTGCGGGAGTTTCATATATATCTCTTCTTCGAGGTCACCATGTAAAAATGCGTTTGTAACATCCATCTGGTGGACAAACCAATTCTTGACTGCAGCTAGTTTGAGTATGAAGCGGACCGAGGCGAGTTTAGCAACAGGCGCAAATGTGTCAGTGAAGTCTTCACCTTCGGTTTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

103

Start:

29825704

End:

29825806

Strand:

+

>A01_LTR-Copia_56

GTAAGTGGGTTTTCACAATAAAGAGGAATGCTGATGGGTCTGTTGATAGGTTCAAAGCTCGCCTAGTTGCTAAAGGATTCAATCAACGCCCTGGTGTTGACTA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

83

Start:

29957692

End:

29957774

Strand:

-

>A01_LTR-Copia_57

GCTGCAGCCATGGATCTGTACTCTGCTTCAGCCGATGAATGCGACACTGTGTCTTGTTTCTTAGTTTTCCAGGAAATTGGAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

222

Start:

31142710

End:

31142931

Strand:

-

>A01_LTR-Copia_58

TAGCAACCGGCGCAAAGACTTCATCATAGTCTATCCCATGCTTCTGAACATAACCTTTGGCCACTAGCCTTGCTTTATACTTGTTCACGCTCCCGTCTGGATTACGTTTGATTTTAAATACCCATTTCAGCCCTATGGCTTTAACTCCCACTGGTAGATCAACTAGAGTCCACGTTCGATTCTTCTCAATAGAAATAATCTCATCTTCACAAGCGTTTAACC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

85

Start:

31143644

End:

31143728

Strand:

-

>A01_LTR-Copia_59

GTCTCTCGACAACACCATTTTGCTGCGGAGAATATGGAGCAGTCAAGTGTCTTTGAATACCGTTCTCTTCACAAAAGATATTGAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

138

Start:

31149082

End:

31149219

Strand:

-

>A01_LTR-Copia_60

AGTCCATACAGAGCTTTGTGTAGCTTGTACACCTTGCCCTCCTTGCCTTCTTCAATGAAACCCTCCGGTTGAGCGACGTACACATCTTCCTTTAAATCACCATGCAGAAACGCTGTCTTGACGTCTAAGTGATGTACT