Comparison table
The gene annotation abbreviation corresponding to the functional genes
Comparison table of species name abbreviations
Gene function annotation corresponding to gene ontology

1.Related tables provide two forms of statistical charts. Click the graph to view the information of species with this functional gene

2.Across species information search by searching gene annotation information abbreviations







The left figure shows the results of searching for gene annotation abbreviation AAO4 as an example

1.Click the gene ID to conduct relevant query (it will not be explained later)

2.Click more to view the data information of aao4 in different species

3.Click the download button to download the entire table information above in XLS format

1.Click to display the information of specific disease resistance genes (see the figure below for details)

2.Click to download the complete disease resistance gene and its domain information of this species


3.Click to download the disease resistance gene sequence of all species

1.Click to view domains and sequences (see the figure below for details)













2.Click View domain and sequence to download this table

1.Related tables provide two forms of statistical charts. Click the graph to view the information of species with this functional gene

2.Click the Download button to download the entire table information above in XLS format

1.63 transcription factors can be selected from the drop-down list
2.Click the Browse button to view the gene information of a species about the transcription factor, and click the download button to download the CDS sequence and protein sequence
3.View information about 63 transcription factors in this species
4.Download the CDS and protein sequences of 63 transcription factors about this species
5.Download the CDS and protein sequences of all species contained in this transcription factor
6.Download the XLS table containing the species and number of current transcription factors

1.2.3. The three drop-down lists represent the classification, order and superfamily of transposons respectively

4.5. Click the download button to download transposon sequences of different categories in this species

6.Click to view the basic information of transposon superfamily in this species

8.9.10 click the download button to download the sequence files of all species contained in the three categories of transposons respectively

7. Click to browse the information of all transposon classifications of this species

1. Click to download the sequence file of transposon order

2. Display the specific number of transposon superfamilies. Click the number to view the specific information

3. Click to download all Other transposon information

1.Search input the gene ID, and the genome will be automatically identified laters

2.Click on the number to view specific information, where the ID can be directly entered into the protein database

3.Click to jump to the corresponding link

4.Click to download the search results in XLS form







1.Select the required search type to realize cross species search

2.Click on the number to view specific information

3. Click the download button to download the XLS of the above search results form

1.Enter the database and the corresponding gene ID

Search to view the search results

2.Click to download the gRNA results in XLS form



3.Click to download the off target results in XLS form

1.Enter the database and the corresponding gene ID

Search to view the search results

2.Click to download the search results in XLS form

1.Enter the gene ID or group number and select the group you want to query. You can see the number of this group in 27 Cruciferae species

2.Click on the number under each species to see the specific lineal homologous (or paragenetic homologous) genes, as shown in the figure homologs_result

Figure: homologs_result (left)

3.Click tree to view the constructed gene tree. The image format is PDF, which can be downloaded by users. As shown in the figure tree_result

4.Click sequences to download the related orthologous (or paralogous) sequence information


5.Click on "orthologs_All" can view all the orthologous gene information of the group you search. As shown in the figure Orthologs_All


Figure: orthologs_All (left)

6.Click "paralogs_All" can view all the collateral homologous gene information of the group you search.


7.Click on the specific number to get the relevant (what) results as the input number, as shown in the figure orthologs_result



Figure: Orthologs_result (left)












Figure: tree_result (left)

1.Enter the flank and the corresponding gene ID

2.Automatically fill in the name of the species where the gene is located. If it is red, it does not exist

3.Select the species you need to query


4.Each point represents a gene ID, which can be viewed by hovering the mouse, and can be clicked for Seq_fetch


1.Enter the processed four-line gff file required by Synteny

2.Click the button to download the sample input file

3.Enter the required file and select the drawing type and control file

4.Click the button to display examples

1.Database version cancels the generation of colllinearity files

2.Directly select species and drawing type to output pictures.Be careful! If it is the circle type, only "Species one" is used

1.Enter the fasta sequence that needs to be blast aligned or submit the file

2.Choose a database for comparison or submit a file

3.Select the required parameters

4.Enter your email and click the Blast button

5.The result will be sent to your mailbox later




Note: the submitted file size should not exceed 200MB!

1.The result of blast has 12 columns, and each column represents the ID identification of the query sequence, the ID identification of the target sequence on the alignment, the consistency percentage of the sequence alignment, the length of the alignment area conforming to the alignment, the number of mismatches in the alignment area, the number of gaps in the alignment area, the start and end sites of the alignment area on the query sequence (query ID), and the alignment area on the target sequence (subject ID) Start and stop sites on, expected value of comparison results, bit score value of comparison results
2.The database only displays the first 99 blast results
3. Click download to download the complete blast results

1.Enter the gene ID of the species

2.Adjustment parameters

1.Enter the sequence directly

2.Or select the file (the file format is a single gene sequence, it is best not to wrap the sequence)

3.Adjust parameters to search

4.After the search is successful, the top ten results will pop up, click download to download

Declaration
    Some pictures and data of this website come from the Internet and other public database platforms. Copyright belongs to the original author. If there is any infringement, please contact Song Xiaoming (songxiaoming116@163.com) in time to delete it. In addition, all data in this database is free for all scientists to use. For commercial use, please contact us for authorization.