Number Species Genome_ID Representative genome File number References More Download
1
Aethionema arabicum
 Ae.arabicum-v1.0 Yes 4 Haudry et al.
2
Aethionema arabicum
 Ae.arabicum-v1.0 NO 0 Nguyen et al.
3
Arabidopsis halleri
 A.halleri-v2.2 Yes 4 Briskine et al.
4
Arabidopsis lyrata
 Lyrate_rockcress-v2.1 Yes 4 Hu et al.
5
Arabidopsis thaliana
 Thale_cress-TAIR_10 Yes 4 The Arabidopsis Genome Initiative
6
Arabidopsis thaliana
 Thale_cress-Araport11 NO 4 Cheng et al.
7
Arabidopsis thaliana
 Thale_cress-Col-PEK1.5 NO 4 Hou et al.
8
Arabis alpina
 Gray_rock-cress-v4.0 NO 4 Willing et al.
9
Arabis alpina
 Gray_rock-cress-v4.1 Yes 4 Jiao et al.
10
Armoracia rusticana
 A.rusticana-v1.0 NO 4 Martin A. Lysak et al.
11
Barbarea vulgaris
 Bittercress-v1.0 Yes 4 Byrne et al.
12
Boechera retrofracta
 Holboell's_rock-cress-v1.0 Yes 4 Kliver et al.
13
Boechera stricta
 Drummond's_rockcress-v1.2 Yes 4 Lee et al.
14
Brassica carinata-BBCC
 Zd-1-v1.0 Yes 4 Song et al.
15
Brassica juncea var.tumida-AABB
 Tumida-T84-66-v1.5 Yes 4 Yang et al.
16
Brassica juncea var.varuna-AABB
 Varuna-v1.0 NO 4 Paritosh et al.
17
Brassica napus ssp.oleifera-AACC
 Darmor-v5.0 NO 4 Chalhoub et al.
18
Brassica napus ssp.oleifera-AACC
 Darmor-v1.0 NO 0 Bayer et al.
19
Brassica napus ssp.oleifera-AACC
 Tapidor-v1.0 NO 0 Bayer et al.
20
Brassica napus ssp.oleifera-AACC
 ZS11-v2.0 NO 0 Sun et al.

< 1 2 3 4 5 > Total 5

Aethionema arabicum

Number Species Family Genus Cultivar Common_name
1 Aethionema arabicum Brassicaceae Aethionema A. arabicum Ae. arabicum

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 y Ae.arabicum-v1.0 2013.06 Nature Genetics

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
240 203 23,167 11 118.00 Illumina

References Reference_title
Haudry et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

Database_name BRAD (Brassica Database)

Aethionema arabicum

Number Species Family Genus Cultivar Common_name
2 Aethionema arabicum Brassicaceae Aethionema A. arabicum Ae. arabicum

Version File_number Aanlyze Genome ID Year Journal
v1.0 0 None Ae.arabicum-v1.0 2019.11 G3

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
240 203.5 20,256 11 10,328.00 PacBio; MinION

References Reference_title
Nguyen et al. Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family

Database_name NCBI

Arabidopsis halleri

Number Species Family Genus Cultivar Common_name
3 Arabidopsis halleri Brassicaceae Arabidopsis A. halleri Arabidopsis halleri

Version File_number Aanlyze Genome ID Year Journal
v2.2 4 y A.halleri-v2.2 2016.09 Molecular Ecology Resources

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
251.3 196 32,553 8 712.00 Illumina

References Reference_title
Briskine et al. Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology

Database_name EnsemblPlants

Arabidopsis lyrata

Number Species Family Genus Cultivar Common_name
4 Arabidopsis lyrata Brassicaceae Arabidopsis A. lyrata Lyrate rockcress

Version File_number Aanlyze Genome ID Year Journal
v2.1 4 y Lyrate_rockcress-v2.1 2011.05 Nature Genetics

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
207 207 32,670 8 24,500.00 Sanger

References Reference_title
Hu et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

Database_name Phytozome

Arabidopsis thaliana

Number Species Family Genus Cultivar Common_name
5 Arabidopsis thaliana Brassicaceae Arabidopsis A. thaliana Thale cress

Version File_number Aanlyze Genome ID Year Journal
TAIR 10 4 y Thale_cress-TAIR_10 2000.12 Nature

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
125 135 27,416 5 NA Sanger

References Reference_title
The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

Database_name Phytozome

Arabidopsis thaliana

Number Species Family Genus Cultivar Common_name
6 Arabidopsis thaliana Brassicaceae Arabidopsis A. thaliana Thale cress

Version File_number Aanlyze Genome ID Year Journal
Araport11 4 None Thale_cress-Araport11 2017.02 The Plant Journal

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
125 135 27,655 5 NA Sanger; Illumina

References Reference_title
Cheng et al. Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

Database_name Phytozome

Arabidopsis thaliana

Number Species Family Genus Cultivar Common_name
7 Arabidopsis thaliana Brassicaceae Arabidopsis A. thaliana Thale cress

Version File_number Aanlyze Genome ID Year Journal
Col-PEK1.5 4 None Thale_cress-Col-PEK1.5 2022.08 Molecular Plant

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
NA 133.92 27,629 5 NA PacBio; Nanopore; Illumina

References Reference_title
Hou et al. A near-complete assembly of an Arabidopsis thaliana genome

Database_name AraShare

Arabis alpina

Number Species Family Genus Cultivar Common_name
8 Arabis alpina Brassicaceae Arabis A. alpina Gray rock-cress

Version File_number Aanlyze Genome ID Year Journal
v4.0 4 None Gray_rock-cress-v4.0 2015.02 Nature Plants

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
375 309 30,729 8 788.00 Illumina; Sanger; 454

References Reference_title
Willing et al. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

Database_name NCBI

Arabis alpina

Number Species Family Genus Cultivar Common_name
9 Arabis alpina Brassicaceae Arabis A. alpina Gray rock-cress

Version File_number Aanlyze Genome ID Year Journal
v4.1 4 y Gray_rock-cress-v4.1 2017.05 Genome Research

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
370 337 29,470 8 3,800.00 PacBio; Illumina; BioNano

References Reference_title
Jiao et al. Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

Database_name Genomic resources for Arabis alpina

Armoracia rusticana

Number Species Family Genus Cultivar Common_name
10 Armoracia rusticana Brassicaceae Armoracia A.rusticana Horseradish

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 None A.rusticana-v1.0 2023.07 Nature Communications

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
636 610.85 42,025 2n=4x=32 33,740.00 Illumina; PacBio;

References Reference_title
Martin A. Lysak et al. The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits

Database_name figshare

Barbarea vulgaris

Number Species Family Genus Cultivar Common_name
11 Barbarea vulgaris Brassicaceae Barbarea B. vulgaris Bittercress

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 y Bittercress-v1.0 2017.01 Scientific Reports

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
270 167.7 25,350 8 56.36 Illumina; PacBio

References Reference_title
Byrne et al. The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

Database_name Barbarea vulgaris Genome Sequencing Project

Boechera retrofracta

Number Species Family Genus Cultivar Common_name
12 Boechera retrofracta Brassicaceae Boechera B. retrofracta Holboell's rock-cress

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 y Holboell's_rock-cress-v1.0 2018.03 Genes

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
227  222.25 27,048 7 2,300.00 Illumina; 454

References Reference_title
Kliver et al. Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes

Database_name NCBI

Boechera stricta

Number Species Family Genus Cultivar Common_name
13 Boechera stricta Brassicaceae Boechera B. stricta Drummond's rockcress

Version File_number Aanlyze Genome ID Year Journal
v1.2 4 y Drummond's_rockcress-v1.2 2017.04 Nature Ecology & evolution

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
210.6 196.5 27416 7 2,100.00 Illumina; 454

References Reference_title
Lee et al. Young inversion with multiple linked QTLs under selection in a hybrid zone

Database_name Phytozome

Brassica carinata-BBCC

Number Species Family Genus Cultivar Common_name
14 Brassica carinata-BBCC Brassicaceae Boechera B. carinata Ethiopian mustard

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 y Zd-1-v1.0 2021.05 Plant Physiology

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
1150.76 1086.79 97,149 17 60,000.00 Nanopore; Illumina; Hi-C

References Reference_title
Song et al. Brassica carinata genome characterization clarifies U’s triangle model of evolution and polyploidy in Brassica

Database_name Brassica genomics database

Brassica juncea var.tumida-AABB

Number Species Family Genus Cultivar Common_name
15 Brassica juncea var.tumida-AABB Brassicaceae Brassica B. juncea var. Tumida 'T84-66' Mustard

Version File_number Aanlyze Genome ID Year Journal
v1.5 4 y Tumida-T84-66-v1.5 2016.09 Nature Genetics

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
922.1 955 80,050 18 1,523.60 PacBio; Illumina; BioNano

References Reference_title
Yang et al. The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection

Database_name BRAD (Brassica Database)

Brassica juncea var.varuna-AABB

Number Species Family Genus Cultivar Common_name
16 Brassica juncea var.varuna-AABB Brassicaceae Brassica B. juncea var. Varuna Mustard

Version File_number Aanlyze Genome ID Year Journal
v1.0 4 None Varuna-v1.0 2020.10 Plant Biotechnology Journal

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
920 840.2 101,959 18 33,612.80 PacBio; Illumina

References Reference_title
Paritosh et al. A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of theA and B genomes

Database_name CGMCP (Centre for Genetic Manipulation of Crop Plants)

Brassica napus ssp.oleifera-AACC

Number Species Family Genus Cultivar Common_name
17 Brassica napus ssp.oleifera-AACC Brassicaceae Brassica B. napus var. Darmor-bzh Oilseed rape

Version File_number Aanlyze Genome ID Year Journal
v5.0 4 None Darmor-v5.0 2014.08 Science

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
1130 849.7 101,040 19 681.00 Illumina; 454;Sanger

References Reference_title
Chalhoub et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

Database_name BRAD (Brassica Database)

Brassica napus ssp.oleifera-AACC

Number Species Family Genus Cultivar Common_name
18 Brassica napus ssp.oleifera-AACC Brassicaceae Brassica B. napus var. Darmor-bzh Oilseed rape

Version File_number Aanlyze Genome ID Year Journal
v1.0 0 None Darmor-v1.0 2017.04 Plant Biotechnology Journal

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
1345 850 80,382 19 NA Illumina

References Reference_title
Bayer et al. Assembly and comparison of two closely related Brassica napus genomes

Database_name NCBI

Brassica napus ssp.oleifera-AACC

Number Species Family Genus Cultivar Common_name
19 Brassica napus ssp.oleifera-AACC Brassicaceae Brassica B. napus var. Tapidor Oilseed rape

Version File_number Aanlyze Genome ID Year Journal
v1.0 0 None Tapidor-v1.0 2017.04 Plant Biotechnology Journal

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
1335 636 70,162 19 197.00 Illumina

References Reference_title
Bayer et al. Assembly and comparison of two closely related Brassica napus genomes

Database_name NCBI

Brassica napus ssp.oleifera-AACC

Number Species Family Genus Cultivar Common_name
20 Brassica napus ssp.oleifera-AACC Brassicaceae Brassica B. napus var. ZS11 Oilseed rape

Version File_number Aanlyze Genome ID Year Journal
v2.0 0 None ZS11-v2.0 2017.08 The Plant Journal

Estimated Size (Mb) Assembled (Mb) Gene (#) Chr(#) Scaffold N50 (Kb) Sequencer Types
1132 976 101,942 19 602.22 Illumina

References Reference_title
Sun et al. The high-quality genome of Brassica napus cultivar ‘ZS11’ reveals the introgression history in semi-winter morphotype

Database_name NCBI

Aethionema arabicum

Genome Gff Protein CDS Annotation

Aethionema arabicum

Genome Gff Protein CDS
NONE NONE NONE NONE

Arabidopsis halleri

Genome Gff Protein CDS Annotation

Arabidopsis lyrata

Genome Gff Protein CDS Annotation

Arabidopsis thaliana

Genome Gff Protein CDS Annotation

Arabidopsis thaliana

Genome Gff Protein CDS

Arabidopsis thaliana

Genome Gff Protein CDS

Arabis alpina

Genome Gff Protein CDS

Arabis alpina

Genome Gff Protein CDS Annotation

Armoracia rusticana

Genome Gff Protein CDS

Barbarea vulgaris

Genome Gff Protein CDS Annotation

Boechera retrofracta

Genome Gff Protein CDS Annotation

Boechera stricta

Genome Gff Protein CDS Annotation

Brassica carinata-BBCC

Genome Gff Protein CDS Annotation

Brassica juncea var.tumida-AABB

Genome Gff Protein CDS Annotation

Brassica juncea var.varuna-AABB

Genome Gff Protein CDS

Brassica napus ssp.oleifera-AACC

Genome Gff Protein CDS

Brassica napus ssp.oleifera-AACC

Genome Gff Protein CDS
NONE NONE NONE NONE

Brassica napus ssp.oleifera-AACC

Genome Gff Protein CDS
NONE NONE NONE NONE

Brassica napus ssp.oleifera-AACC

Genome Gff Protein CDS
NONE NONE NONE NONE

species Genome Gff Protein CDS
BRO
CCA
CCB
CXA
CXB
MIZ
OIA
OIB
OIC
PCA
PCB
TBA
TCA
TUA
TUE
WTC