| Number | Species | Genome_ID | Representative genome | File number | References | More | Download |
|---|---|---|---|---|---|---|---|
| 41 | BnSDH-v1.0 | NO | 1 | Paritosh et al. | |||
| 42 | BnSDH-v1.1 | NO | 4 | Paritosh et al. | |||
| 43 | JZS-v1.1 | Yes | 4 | Liu et al. | |||
| 44 | TO1000DH-v1.0 | NO | 4 | Parkin et al. | |||
| 45 | HDEM-v0.0 | NO | 4 | Belser et al. | |||
| 46 | Botrytis_cauliflower-v1.0 | NO | 0 | Sun et al. | |||
| 47 | Capitata_D134-v3.1 | NO | 4 | Lv et al. | |||
| 48 | Botrytis_Korso-v1.0 | NO | 4 | Guo et al. | |||
| 49 | Capitata_OX-heart-v1.0 | NO | 4 | Guo et al. | |||
| 50 | JZS-v2.0 | NO | 4 | Cai et al. | |||
| 51 | Chiifu-v1.5 | NO | 4 | Wang et al. | |||
| 52 | Chiifu-v2.0 | NO | 4 | Cai et al. | |||
| 53 | Chiifu-v2.5 | NO | 4 | Cai et al. | |||
| 54 | Chiifu-v3.0 | Yes | 4 | Zhang et al. | |||
| 55 | Chiifu-v3.5 | NO | 4 | Zhang et al. | |||
| 56 | Chiifu-v4.0 | NO | 4 | Zhang et al. | |||
| 57 | Yellow_sarson_Z1-v2.0 | NO | 4 | Belser et al. | |||
| 58 | CDA-v1.0 | NO | 1 | Zou et al. | |||
| 59 | Turnip_ECD04-v0.0 | NO | 1 | Yang et al. | |||
| 60 | Pakchoi-NHCC001-v1.0 | NO | 4 | Li et al. |
Brassica nigra var.sangam-BB
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 41 | Brassica nigra var.sangam-BB | Brassicaceae | Brassica | B. nigra var. Sangam | Black mustard |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 1 | None | BnSDH-v1.0 | 2021.03 | Plant Biotechnology Journal |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 591 | 470.8 | 46,227 | 8 | 85.90 | Illumina; Nanopore |
| References | Reference_title |
|---|---|
| Paritosh et al. | A chromosome-scale assembly of allotetraploid Brassicajuncea (AABB) elucidates comparative architecture of theA and B genomes |
| Database_name | NCBI |
|---|
Brassica nigra var.sangam-BB
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 42 | Brassica nigra var.sangam-BB | Brassicaceae | Brassica | B. nigra var. Sangam | Black mustard |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.1 | 4 | None | BnSDH-v1.1 | 2021.03 | Plant Biotechnology Journal |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 591 | 470.8 | 46,227 | 8 | 85.90 | Illumina; Nanopore |
| References | Reference_title |
|---|---|
| Paritosh et al. | A chromosome-scale assembly of allotetraploid Brassicajuncea (AABB) elucidates comparative architecture of the A and B genomes |
| Database_name | BnIR |
|---|
Brassica oleracea var.capitata-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 43 | Brassica oleracea var.capitata-CC | Brassicaceae | Brassica | B. oleracea var. capitata line 02–12 | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.1 | 4 | y | JZS-v1.1 | 2014.05 | Nature Communications |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 630 | 540 | 45,758 | 9 | 1,457.00 | Illumina; 454;Sanger |
| References | Reference_title |
|---|---|
| Liu et al. | The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes |
| Database_name | Phytozome |
|---|
Brassica oleracea var.oleracea-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 44 | Brassica oleracea var.oleracea-CC | Brassicaceae | Brassica | B. oleracea var. oleracea kale-like type TO1000DH | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 4 | None | TO1000DH-v1.0 | 2014.06 | Genome Biology |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 489 | 648 | 52,774 | 9 | 850.00 | Illumina; 454 |
| References | Reference_title |
|---|---|
| Parkin et al. | Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea |
| Database_name | NCBI |
|---|
Brassica oleracea var.italica-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 45 | Brassica oleracea var.italica-CC | Brassicaceae | Brassica | B. oleracea ssp. italica var. HDEM genotype (broccoli) | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v0.0 | 4 | None | HDEM-v0.0 | 2018.11 | Nature Plants |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 630 | 554.98 | 61,279 | 9 | 58,257.00 | Nanopore; Illumina; BioNano |
| References | Reference_title |
|---|---|
| Belser et al. | Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps |
| Database_name | Genoscope |
|---|
Brassica oleracea var.botrytis-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 46 | Brassica oleracea var.botrytis-CC | Brassicaceae | Brassica | B. oleracea var. botrytis (cauliflower) | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 0 | None | Botrytis_cauliflower-v1.0 | 2019.07 | Horticulture Research |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 603.04 | 584.6 | 47,772 | 9 | 2,110.00 | PacBio; Illumina |
| References | Reference_title |
|---|---|
| Sun et al. | Draft genome sequence of cauliflower (Brassica oleracea L. var. botrytis) provides new insights into the C genome in Brassica species |
| Database_name | NCBI |
|---|
Brassica oleracea var.capitata-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 47 | Brassica oleracea var.capitata-CC | Brassicaceae | Brassica | B. oleracea var. capitata D134 | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v3.1 | 4 | None | Capitata_D134-v3.1 | 2020.07 | Scientific Reports |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 659.8 | 529.9 | 44,701 | 9 | 61,740.00 | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Lv et al. | A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics |
| Database_name | CNGBdb |
|---|
Brassica oleracea var.botrytis-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 48 | Brassica oleracea var.botrytis-CC | Brassicaceae | Brassica | B. oleracea var. botrytis cv. Korso | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 4 | None | Botrytis_Korso-v1.0 | 2021.05 | BMC Biology |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 566.9 | 549.7 | 60,640 | 9 | 4,970.00 | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Guo et al. | Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification |
| Database_name | Figshare |
|---|
Brassica oleracea var.capitata-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 49 | Brassica oleracea var.capitata-CC | Brassicaceae | Brassica | B. oleracea var. capitata cv. OX-heart | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 4 | None | Capitata_OX-heart-v1.0 | 2021.05 | BMC Biology |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 587.7 | 565.4 | 62,232 | 9 | 3,100.00 | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Guo et al. | Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification |
| Database_name | Figshare |
|---|
Brassica oleracea var.capitata-CC
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 50 | Brassica oleracea var.capitata-CC | Brassicaceae | Brassica | B. oleracea var. capitata cv. JZS | Cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v2.0 | 4 | None | JZS-v2.0 | 2020.08 | Theor Appl Genet |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| NA | 561.16 | 59,064 | 9 | NA | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Cai et al. | Improved Brassica oleracea JZS assembly reveals significant changing of LTR-RT dynamics in different morphotypes |
| Database_name | BnIR |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 51 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.5 | 4 | None | Chiifu-v1.5 | 2011.08 | Nature Genetics |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 485 | 284 | 41,020 | 10 | 1,971.00 | Illumina |
| References | Reference_title |
|---|---|
| Wang et al. | The genome of the mesopolyploid crop species Brassica rapa |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 52 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v2.0 | 4 | None | Chiifu-v2.0 | 2017.04 | Molecular Plant |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 485 | 389.2 | 48,826 | 10 | 3,380.00 | Illumina; PacBio |
| References | Reference_title |
|---|---|
| Cai et al. | Brassica rapa Genome 2.0: A Reference Upgrade through Sequence Re-assembly and Gene Re-annotation |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 53 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v2.5 | 4 | None | Chiifu-v2.5 | 2017.04 | Molecular Plant |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 485 | 389.2 | 48,826 | 10 | 3,380.00 | Illumina; PacBio |
| References | Reference_title |
|---|---|
| Cai et al. | Brassica rapa Genome 2.0: A Reference Upgrade through Sequence Re-assembly and Gene Re-annotation |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 54 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v3.0 | 4 | y | Chiifu-v3.0 | 2018.08 | Horticulture Research |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 442.9 | 353.14 | 45,985 | 10 | 4,440.00 | PacBio; Illumina; BioNano; Hi-C |
| References | Reference_title |
|---|---|
| Zhang et al. | Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 55 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v3.5 | 4 | None | Chiifu-v3.5 | 2022.03 | Front. Plant Sci |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| NA | NA | 47,244 | 10 | NA | PacBio |
| References | Reference_title |
|---|---|
| Zhang et al. | Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.pekinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 56 | Brassica rapa ssp.pekinensis-AA | Brassicaceae | Brassica | B. rapa L. var. Chiifu | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v4.0 | 4 | None | Chiifu-v4.0 | 2023.01 | Plant Biotechnology Journal |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| None | 424.59 | 83,682 | 10 | 382,600.00 | PacBio; Illumina; BioNano; Hi-C |
| References | Reference_title |
|---|---|
| Zhang et al. | A near-complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica rapa ssp.trilocularis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 57 | Brassica rapa ssp.trilocularis-AA | Brassicaceae | Brassica | B. rapa ssp. trilocularis var. Z1 genotype (yellow sarson) | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v2.0 | 4 | None | Yellow_sarson_Z1-v2.0 | 2018.11 | Nature Plants |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 529 | 401.92 | 46,721 | 10 | 34,481.00 | Nanopore; Illumina; BioNano |
| References | Reference_title |
|---|---|
| Belser et al. | Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps |
| Database_name | Genoscope |
|---|
Brassica rapa-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 58 | Brassica rapa-AA | Brassicaceae | Brassica | B. rapa var. CDA | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 1 | None | CDA-v1.0 | 2019.04 | Plant Biotechnology Journal |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 514 | 412 | NA | 10 | 178.90 | Illunima |
| References | Reference_title |
|---|---|
| Zou et al. | Genomeâ€wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed |
| Database_name | BnPedigome |
|---|
Brassica rapa ssp.rapifera-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 59 | Brassica rapa ssp.rapifera-AA | Brassicaceae | Brassica | B. rapa var. ECD04 (European turnip) | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v0.0 | 1 | None | Turnip_ECD04-v0.0 | 2022.04 | Plant Biotechnology Journal |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| NA | 350.34 | 48,094 | 10 | NA | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Yang et al. | R gene triplication confers European fodder turnip with improved clubroot resistance |
| Database_name | BnIR |
|---|
Brassica rapa ssp.chinensis-AA
| Number | Species | Family | Genus | Cultivar | Common_name |
|---|---|---|---|---|---|
| 60 | Brassica rapa ssp.chinensis-AA | Brassicaceae | Brassica | B. rapa var. pakchoi.NHCC001 | Chinese cabbage |
| Version | File_number | Aanlyze | Genome ID | Year | Journal |
|---|---|---|---|---|---|
| v1.0 | 4 | None | Pakchoi-NHCC001-v1.0 | 2020.12 | Horticulture Research |
| Estimated Size (Mb) | Assembled (Mb) | Gene (#) | Chr(#) | Scaffold N50 (Kb) | Sequencer Types |
|---|---|---|---|---|---|
| 477.76 | 405.33 | 48,158 | 10 | 38,130.00 | PacBio; Illumina; Hi-C |
| References | Reference_title |
|---|---|
| Li et al. | A chromosome-level reference genome of non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis] |
| Database_name | NHCCDB |
|---|
Brassica oleracea var.botrytis-CC
| Genome | Gff | Protein | CDS |
|---|---|---|---|
| NONE | NONE | NONE | NONE |