ID Class Order Superfamily Length Start End Strand View
A01_LTR-Copia_81 RetrotransposonsLTRLTR-Copia1683857988938580056+
A01_LTR-Copia_82 RetrotransposonsLTRLTR-Copia2734224354842243820-
A02_LTR-Copia_83 RetrotransposonsLTRLTR-Copia27541583624158636-
A02_LTR-Copia_84 RetrotransposonsLTRLTR-Copia15641695444169699-
A02_LTR-Copia_85 RetrotransposonsLTRLTR-Copia33369480146948346+
A02_LTR-Copia_86 RetrotransposonsLTRLTR-Copia12275401377540258-
A02_LTR-Copia_87 RetrotransposonsLTRLTR-Copia33393824619382793+
A02_LTR-Copia_88 RetrotransposonsLTRLTR-Copia2141031967810319891+
A02_LTR-Copia_89 RetrotransposonsLTRLTR-Copia3431032056510320907+
A02_LTR-Copia_90 RetrotransposonsLTRLTR-Copia2141033694910337162+
A02_LTR-Copia_91 RetrotransposonsLTRLTR-Copia2951033788410338178+
A02_LTR-Copia_92 RetrotransposonsLTRLTR-Copia1351071065410710788-
A02_LTR-Copia_93 RetrotransposonsLTRLTR-Copia3851159334111593725-
A02_LTR-Copia_94 RetrotransposonsLTRLTR-Copia1211159376411593884-
A02_LTR-Copia_95 RetrotransposonsLTRLTR-Copia2671189466111894927+
A02_LTR-Copia_96 RetrotransposonsLTRLTR-Copia1811265423012654410-
A02_LTR-Copia_97 RetrotransposonsLTRLTR-Copia1811327803013278210-
A02_LTR-Copia_98 RetrotransposonsLTRLTR-Copia851517559015175674-
A02_LTR-Copia_99 RetrotransposonsLTRLTR-Copia1491527140915271557+
A02_LTR-Copia_100 RetrotransposonsLTRLTR-Copia821534680015346881+

< 5 6 7 8 9 > Total 2416


Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

168

Start:

38579889  

End:

38580056

Strand:

+

>A01_LTR-Copia_81

AATGGATGTAGTAACTGCTTCTATATATGGTCCACTGGATAATGAGATATACATGAAAGTACCAGAAGATATTGAGCTGCCAAACGCAGCAAGTTCTCGAGAACAACATTGTATAAAGTTGAACAAATCACTTTATGGATTGAAACAATCAGGTCGAATGTGGTACAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

273

Start:

42243548  

End:

42243820

Strand:

-

>A01_LTR-Copia_82

CTGTTTAAGGCCATACAGTGACTTGTGTAGCTTGCAAACCGCATTCTTAGGAACTGATTTGCCAGTCAGCTCAGTATAACCTGGTGGCAAAGTCATATATATCTCTTCATCTAGATCTCCATTCAGAAAAGCGTTGCTAATATCAAGCTGTGTAACAGACCAATTCTGAAGAGCAGCTAGCTTCATCAATATACGGAATGTACCAAGCTTTGCTACAGGAGAGAATGTATCCAAATAGTCAAGCCCTTCTAACTGTGTATATCCCTTTGCAAC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

275

Start:

4158362  

End:

4158636

Strand:

-

>A02_LTR-Copia_83

GATTACTTAAGCCCATAGAGAGACTTCTTCAATACGCAAACTTTTCCTTCGTCTCATTTCTTGATGAATCCCTCTGGTTGTTCTATATAAATGGTTTCATCTAGACTCCCAAGTAAGAACACAGTCTTAACATCCATCTGTTCTAGCTCAGTATCAAAATTAACCATGAATGATAACAACATCCAAATGGATACATGCTTCACTACTGGAGCAAAAATCTCATTGTAGTCAACTCCTTCGACTTGAGTGTAACCTTTAGCAACCAGTCTAGATTT

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

156

Start:

4169544  

End:

4169699

Strand:

-

>A02_LTR-Copia_84

TTATACCACATTCGACCTGATTGTTTCAATCCATAAAGTAATTTGTTTAACTTTATACAATGTTGTTCTTGAGAACTTTCTGCATTTGGCAGCTCAATACCCTCTGGGACTTTCATGTATATATCATTATCCAGTGGACCATATAAGTATGCAGTT

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

333

Start:

6948014  

End:

6948346

Strand:

+

>A02_LTR-Copia_85

TCGGAAGCCTCATGTACATCACTAATACAAGACCAGACCTGCAATTTTCAGTAAGTCTTCTCAGTCGCTTCATGTCAAAACCTACACAACTTCATGTTCAAGCAGCTAAAAGAGTATTGAGATATCTGAGAGGAACGGTGGACTTTGGAATCTGGTACAAGAGAGGAGGAAACGGTGAGCTACAAGTCTACACGGACAGTGATTTTGCTGGGGACGTTGAGAGCAGAAAGAGTACTTCTGGTTACGTCTTTCTTATGGATAATGCTGCAGTTTCTTGGCTTTCAAAGAAGCAGCCAATCGTCACCCTCTCAACAACAGAAGCTGAATATGTTG

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

122

Start:

7540137  

End:

7540258

Strand:

-

>A02_LTR-Copia_86

TCGAATGAAATGAAACCTCCTATGTATATGCTTACTACGTCCATGAAACACCGGATTCTTTGTTAGTGAGATGGCTGATTTGTTATCAACTCTTATAATCACCTTCTTGCAATCACCTCCCA

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

333

Start:

9382461  

End:

9382793

Strand:

+

>A02_LTR-Copia_87

TTGGAAGCCTTATGTATATCACCAATACCAGACCTGACCTGCAATTCTCAGTGAGCCTTCTAAGTCGTTTCATGTCAAAACCCACACAACTTCATGTTCAAGCTGCGAAGAGAGTATTAAGGTACTTAAGAGGGACTCTAGACTACGGAATCTGGTACAAGAGAGGAGGAAGAGGAGAGTTGCAGATATACACTGATAGTGACTTTGCAGGTGATGTTGAGAGTCGAAAGAGCACTTCAGGATATGTCTTTCTTATGGACGATGCAGCAGTTGCTTGGCTTTCTAAGAAACAGCCAATTGTGACACTCTCAACTACAGAAGCTGAATATGTTG

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

214

Start:

10319678  

End:

10319891

Strand:

+

>A02_LTR-Copia_88

CTGCTCCGTACACACCACAGCAGAATGGCGTCGTCGAAAGACGAAACAGAACCCTGTTGGAGATGACCAGGAGTATGTTAAAACATATGAGCATGCCAAATTGGTTTTGGGGAGAGGCAATACGACACTCAGCATACCTTCTGAATAGAATCGCTACACGAGCACTCAAGGACAAGACTCCATATGAGTTATTTCATCTCAAAAAACCAAATGT

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

343

Start:

10320565  

End:

10320907

Strand:

+

>A02_LTR-Copia_89

AAGTGGGTTTTCAAACTGAAACGAAACGCAGATGGGAGTATAAACAAGTTCAAAGCTAGACTTGTTGCGAAAGGATATGTTCAACAATATGGTATTGACTTCGACGAGGTCTTTGCTCCAGTGGCTCGTCTCGAAACAATACGACTTCTAGTGAATTTGGCAGCAGCTTATGGTTGGGAGGTACATCACCTTGATGTAAAAACAGCGTTCTTGCACGGTGAGCTTAAAGAAGTTGTATACGTTTCACAACCAGAGGGTTTTGAGGTAAAAGGTCAAGAGCACAAGGTATACAAACTTAAGAAGGCATTATATGGTTTGAGACAAGCTCCAAGAGCCTGGAACA

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

214

Start:

10336949  

End:

10337162

Strand:

+

>A02_LTR-Copia_90

CTGCTCCGTACACACCACAGCAGAATGGCGTCGTCGAAAGACGAAACAGAACCCTGTTGGAGATGACCAGGAGTATGTTAAAACATATGAGCATGCCAAATTGGTTTTGGGGAGAGGCAATACGACACTCAGCATACCTTCTGAATAGAATCGCTACACGAGCACTCAAGGACAAGACTCCATATGAGTTATTTCATCTCAAAAAACCAAATGT

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

295

Start:

10337884  

End:

10338178

Strand:

+

>A02_LTR-Copia_91

TTCAAAGCTAGACTTGTTGCGAAAGGATATGTTCAACAATATGGTATTGACTTCGACGAGGTCTTTGCTCCAGTGGCTCGTCTCGAAACAATACGACTTCTAGTGAATTTGGCAGCAGCTTATGGTTGGGAGGTACATCACCTTGATGTAAAAACAGCGTTCTTGCACGGTGAGCTTAAAGAAGTTGTATACGTTTCACAACCAGAGGGTTTTGAGGTAAAAGGTCAAGAGCACAAGGTATACAAACTTAAGAAGGCATTATATGGTTTGAGACAAGCTCCAAGAGCCTGGAACA

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

135

Start:

10710654  

End:

10710788

Strand:

-

>A02_LTR-Copia_92

AGCCCATACAATGCTTTCTTAAGTTGAACACTTTGTGTTCTTCTCCTTTCTTCTCAAATCCCTCAGGTTGGTTTACGTATACTTCTTCAACTAGCTCACCATGTAAAAAGGCTGTCTTAACATCTAGATGGTGGA

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

385

Start:

11593341  

End:

11593725

Strand:

-

>A02_LTR-Copia_93

CCCATATCTTTCATTTCAAAGTTCTTAGAGAGATACTTCTTCACATCATGTAACATACCCATGTCATTTGCAGCAAGCAAAATATCATCAACATATAGGACTAAAATCACAAACTTACTCCCATTGATCTTAATGTAGATACATCGATCAACAATGATCTCTACAAAACCATATGATGTGATGGTATCATTAAACTTTATATACCATTGTCGAGAGGCTTGTTTTAGTCCATATATTGACTTTCTCAGCTTACACACCAAATTTTCTTTTCCTGTGACCACGAATTCTTCTGGTTGGTCCATATATACTTCCTCCTCAAGATCTCAATTCAGAAAGGCGGTTTTCACATCCATCTGGTGAAGCTCAAGATCATAATGAGCCACCA

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

121

Start:

11593764  

End:

11593884

Strand:

-

>A02_LTR-Copia_94

GGAGAGAAGGTCTCTTTATAGTCAATGCTATCTTTCTGGGTGAATCTTTTAGCAACAAGGCGAGACTTGCGTCTTTCAGGTTTACCTTTCGAGTCACGTTTAGTCATATAGACCCATTTAC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

267

Start:

11894661  

End:

11894927

Strand:

+

>A02_LTR-Copia_95

AGGTTGGTGGCGAAAGGCTACTCCCAACGTGAAGGCATCGACTATCAAGAGATCTTTTCACCTGTGGTCAAGCACGTATCTATACGCTTGATGTTGTCGATGGTGGTTGATAAAGACTTAGAGCTGGAGCAGTTAGACGTGAAGACTGCATTTCTACATGGAACAATTGACGAGGACATCTACATGGATCAGCCAGAGGGGTACATAGTAGAGGGTCAAGAAGACAAAGTCTGCAAATTGGTGAAGTCCCTATACGGCTTGAAGCAG

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

181

Start:

12654230  

End:

12654410

Strand:

-

>A02_LTR-Copia_96

CCTGACCCAACGTACCTTTCAAATAGCGCACCACTTTTAATGCAGCCAACCAATGATCTTCTTGTGGAGCTTGCATAAACTGCGATAATATATGTATAGCATAGGTCAGATCAGGTCTAGTAGCCCTAAGATAGATAAGACGACCCACTAGTCTTCTATATCGCTCAGGCTCATTGATCAC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

181

Start:

13278030  

End:

13278210

Strand:

-

>A02_LTR-Copia_97

TTTGTCTTCATATCCTTCGGGTTGCTCCATGAATAAATCTTCATCAAGGTTGCCATGAAGAAACGCCGTCTTCACGTCCATTTGCTCCAATTCTAAATCCAAATTGACCACAAGTGACAGCAACACACGTATTGATACATGTTTCACTACTGGAGCAAAGACCTCATGGTAATCAATACCC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

85

Start:

15175590  

End:

15175674

Strand:

-

>A02_LTR-Copia_98

CAAAACCTTCAGGTTGTTTCATGTAAATTTCCTATTCTAAATCACCATTTAGAAAAGCAGTTTTTACATCCATTTGATGGATTTC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

149

Start:

15271409  

End:

15271557

Strand:

+

>A02_LTR-Copia_99

GAACTAGACCAAATGGATGTTAAAACAGCGTTTCTGCACGGAGTTCTACAGGAAAAGATTTATATGGATCAACCCGAGGGGTTTGTAAAGAAGGGTCAGGAAGACAAGGTCTGTCTGTTGAGAAAATCCCTCTACGGGTTGAAGCAATC

Brassica juncea (Tumida_V1.5)

ID:

A02_LTR-Copia_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

82

Start:

15346800  

End:

15346881

Strand:

+

>A02_LTR-Copia_100

AAATACAAGGCATGACTGGTAGCTAAAGGGTATGTTCAGAGACATGGAATTGACTACGATGAATTGTTTGCTCCGGTTGCTA