TBGR-Browse-Bju-LTR.LTR-Copia

ID	Class	Order	Superfamily	Length	Start	End	Strand
A01_LTR-Copia_61	Retrotransposons	LTR	LTR-Copia	138	31163096	31163233	-
A01_LTR-Copia_62	Retrotransposons	LTR	LTR-Copia	138	31176122	31176259	-
A01_LTR-Copia_63	Retrotransposons	LTR	LTR-Copia	138	31874537	31874674	+
A01_LTR-Copia_64	Retrotransposons	LTR	LTR-Copia	294	32152965	32153258	-
A01_LTR-Copia_65	Retrotransposons	LTR	LTR-Copia	473	32444232	32444704	-
A01_LTR-Copia_66	Retrotransposons	LTR	LTR-Copia	127	32618751	32618877	-
A01_LTR-Copia_67	Retrotransposons	LTR	LTR-Copia	251	32618976	32619226	-
A01_LTR-Copia_68	Retrotransposons	LTR	LTR-Copia	146	32619730	32619875	-
A01_LTR-Copia_69	Retrotransposons	LTR	LTR-Copia	143	32670891	32671033	+
A01_LTR-Copia_70	Retrotransposons	LTR	LTR-Copia	123	32714271	32714393	+
A01_LTR-Copia_71	Retrotransposons	LTR	LTR-Copia	91	32934776	32934866	-
A01_LTR-Copia_72	Retrotransposons	LTR	LTR-Copia	356	32965187	32965542	+
A01_LTR-Copia_73	Retrotransposons	LTR	LTR-Copia	390	33485214	33485603	+
A01_LTR-Copia_74	Retrotransposons	LTR	LTR-Copia	200	33924301	33924500	-
A01_LTR-Copia_75	Retrotransposons	LTR	LTR-Copia	477	34493394	34493870	+
A01_LTR-Copia_76	Retrotransposons	LTR	LTR-Copia	403	35343925	35344327	-
A01_LTR-Copia_77	Retrotransposons	LTR	LTR-Copia	118	35918337	35918454	-
A01_LTR-Copia_78	Retrotransposons	LTR	LTR-Copia	118	35924726	35924843	+
A01_LTR-Copia_79	Retrotransposons	LTR	LTR-Copia	118	35953718	35953835	+
A01_LTR-Copia_80	Retrotransposons	LTR	LTR-Copia	86	35971833	35971918	-

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_61

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

138

Start:

31163096

End:

31163233

Strand:

-

>A01_LTR-Copia_61

AGTCCATACAGAGCTTTGTGTAGCTTGTACACCTTGCCCTCCTTGCCTTCTTCAATGAAACCCTCCGGTTGAGCGACGTACACATCTTCCTTTAAATCACCATGCAGAAACGCTGTCTTGACGTCTAAGTGATGTACT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_62

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

138

Start:

31176122

End:

31176259

Strand:

-

>A01_LTR-Copia_62

AGTCCATACAGAGCTTTGTGTAGCTTGTACACCTTGCCCTCCTTGCCTTCTTCAATGAAACCCTCCGGTTGAGCGACGTACACATCTTCCTTTAAATCACCATGCAGAAACGCTGTCTTGACGTCTAAGTGATGTACT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_63

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

138

Start:

31874537

End:

31874674

Strand:

+

>A01_LTR-Copia_63

AGTACATCACCTTGACGTAAAGACAACATTCTTGCATGGTGAGCTTAAGGAAGTTGTGTACGTCTCACAACCAGAGGGGTTCGAGAAGAAAGGACAAGAACACAAGGTATACAAGCTGAATGAAGCCTTATACGGACT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_64

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

294

Start:

32152965

End:

32153258

Strand:

-

>A01_LTR-Copia_64

GTTCTATTCCCTTGGTGACTGCTTGAGTCCATAAAGGGACTTTCTGAGTAAGCACACCATCGACTCCTTTCCTTTCTTGATGTATCCCTCTGGCTGCTCCATGAGGACTTTTTCCTTTAACACTCCGTGGAGGAATGCAGTTTTTACGTCGAGCTGTTCTAGTTCCAAGTCGAAGTTCACTACTGCGGACAAGAGCAGCCTTATTGAGACGTGTTTGACAACTGGCGCAAAGACTTCATTGTAGTCCACACCTTCAGTCTGCGCATAGCCCTTTGCCACCAACCTAGATTTGAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_65

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

473

Start:

32444232

End:

32444704

Strand:

-

>A01_LTR-Copia_65

TTTCATTAGGTACTCGGATAACCTGTTGTACCACATTCGACCTGATTGCTTTAAACCATATAAGGCTTTATTCAGCTTAATGCAATGTTGTTCTCGAGAACCTTTCTTATCTTTGAGCTCCATGCCCTCTGGAACTCTCATATGAATTTCATTATCCAGTGGTCCATATAGGTATGCAGTTACTACATCCATTAGGCGTAAATCTATCTTCTCTTTCACGGCCAGACTGATTAAGTATCTCAATGTAGTTGCATCCACCACAGGGGAGTAAGTCTCCTCATAATCTATTCATGGTCTTTGTGAGAATCTTTGTGCTACAAGCCGTGCTTTGTATCTCACTACTTCTCCTTTCTCATTTCTCTTTCTTACAAAGACCCATTTGTATCCCACTGGTTTGACATCACTTGGTGTATGGATGATAGGGCCAAAAACGCCTCTTTTTCTCAATGATTCTAACTCCATGTTTATAGCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_66

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

127

Start:

32618751

End:

32618877

Strand:

-

>A01_LTR-Copia_66

GAAAAGTGCCAACAATAATTTTCCCTTGCTCAACACATTCTCTAATGAAATGATACCTTGAGTGATTGTGTTTGCTTCTACCATGAAACACCGGATTTTTGGTAAGGGCTATAGCGGATTGATTGTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_67

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

251

Start:

32618976

End:

32619226

Strand:

-

>A01_LTR-Copia_67

ATTCAGCTTCGCAGCTTGACAGTGCCACCGTTTCTTGTTTGACAGAACACCACGTGATCAAGCTTTCTCCAAGATAAAATATGTGACCGGCAGTGCTTCTTCCATCGTCCGGATCGATGTTGTGACTACTATCACTATAGCCTATGATCTTGGGAATCTTTGGTGATGATCTTGTGAATATAAGGCCTAGTGATGTCGTCCCTTTCAAGTATCTCAGGCAATGTTTCATGGCTGCTTCATGTGCTGCTTTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_68

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

146

Start:

32619730

End:

32619875

Strand:

-

>A01_LTR-Copia_68

TGCTTCAAACCATACAACGCTTTGTGCAGCTTATAAACCTTCATCTCGCTTCCTTTCACCTCAAATCCTTCCGGCTGGTTTACATAAACAGTTTCATTAAGTTCACCGTGTAGGAATGCGGTTTTCACATCTAGGTGATGGACTTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_69

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

143

Start:

32670891

End:

32671033

Strand:

+

>A01_LTR-Copia_69

GAAATCCATCAAATGGATGTAAAAACTGCTTTTCTAAATGGTGATTTAGAAGAGGAAATTTACATGAAACAACCTGAAGGTTTTGTCATTCCCGGACAGAAAGACAAAGTATGTCGACTTGTAAAGTCACTTTATGGCTTAAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_70

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

123

Start:

32714271

End:

32714393

Strand:

+

>A01_LTR-Copia_70

ATGATGGTAGAAGCACATCAGGGAACTTTTTCTACTTTGCAAACAGTCCAATCACTTGGAGTTCACATAAACAAGAGACAGTGGCGCTATCCTCTTGCGAGGCCGAGTTCATGGCGGCGACTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_71

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

91

Start:

32934776

End:

32934866

Strand:

-

>A01_LTR-Copia_71

CAAAACCTTCAGGTTGTTTCATGTAAATTTTCTCTTCTAAATCACCATTTAGAAAAGCAGTTTTTACATCCATTTGGTGGATTTCTAGGTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_72

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

356

Start:

32965187

End:

32965542

Strand:

+

>A01_LTR-Copia_72

ATGTGGTTTGGAGGCATAGATGAGGAGATGGATTCTTTTGAAGAGAATCACACTTTTGAGTTGGTGGAATTGCCTAAGGGTAAGAAGGCTCTACTTAATAAATGGGTGTTCAGAATTAAGTATGAGGATGGAGGTTTGCCACCTAGATACAAGGCTAGATTGGTTGTGAAAGGTTACAGCCAGAAGAAGGGAATTGATTATGATGAAATCTTTTCTCCTGTTGTGAAGATGTCATCCATTCGGGTTGTGCTTGGATTGGCAGCGAGCCTTGATCTAGAGGTTGAGCAAATGGATGTGAAGACTGCTTTCTTTCATGGTGATTTGGAGGAAGAGATCTACATGGAACAACCGGAAGG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_73

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

390

Start:

33485214

End:

33485603

Strand:

+

>A01_LTR-Copia_73

ATACAAAGCCAGATTGGTAGCCAAGGGGTTTTCTCAAGTAGAAGGAATAGACTTCACAGAAGTGTTCGCTCCGGTGGTGAAACATGTTTCAATCAGAACCATGCTTTCTCTAGTTGCAAACTATGATCTTGAGCTTGAGCAGTTGGACGTAAAAACAGCCTTTTTGCACGGAACTCTCGATGAAGAAATCTACATGTCACAACCTGAGGGCTTTATTGAGAAAGGAAAAGAGGACAAGGTATGATTGCTAAAGAAGTCAATGTATGGCCTAAAACAGGCACCTAGACAATGGAACAGGAAGTTCAACAGCTTCATGAAAGACAACGGATTCATCAGAAGTTTGAGTGATCCATGTGTCTACATTAAAGGAGAGGGTACATCAGACATGGT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_74

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

200

Start:

33924301

End:

33924500

Strand:

-

>A01_LTR-Copia_74

TGCTGCAACTTTTAATAAGAAACGAACTGTCGTGAGTTTTGCTACAGGGGAGAAAGTCTCAGTATAATCCAAACCTTCTTTCTGAGTAAAACCTTTAGCAACCACACGAACTTTATGTCTCTCAAGAGTGCCATCTGCATTATACTTCAAAGAATACAACACCTTACACCCAACTGCTTTCTTCCCAGCCGGTAAGGTAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_75

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

477

Start:

34493394

End:

34493870

Strand:

+

>A01_LTR-Copia_75

TGAAGAAGCTATGCGTAGTAAGGACTGGGAAAAGTGGAATGCAGCAATGGACGATGAAATGCTTTCACTTGACAAGAACAAGACATGGGATCTAAGCTATCTTCCCAAAGACAAGAAGAAGATAGGCTGTAGATGGATCTACAAATACAAGCCAGGGATACCAGGTGTCGAACCTCCTAGACACAAAGCACGGCTGGTGGCAAAAGGATATTCTCAACGGGAAGGAGTTGATTATCAAGAAATTTTCTCTCCGGTGGTGAAGCATGTGTCTATTAGACTCATGCTATCAATAGTGGTTGACAAAGATCTTGAAATGGAGCAGCTTGATGTGAAGACGGCTTTTCTGCACGGATCCATTGACGAAGAGATCTACATGGAGCAGCCTCCGGGATATGAGGTTAAAGGAGAAGAGGACAAGGTCTGTGAGCTGGTGAAGTCGCTGTATGGTCTGAAACAAGCGCCTCGACAGTGGAACAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_76

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

403

Start:

35343925

End:

35344327

Strand:

-

>A01_LTR-Copia_76

TTTCACTAGGTACTCTGATAATCTGTTGTACCACATTTGACCTGATTGTTACAAACCATATAAGGCTTTATTCAGCTTAATACAATGATGTTCTCGAGAACCTCTCTTATCTTTGAGCTCAATACCCTCTAGAACTCTCATATGAATTTTATTATCCAGTAGACCATATAAATATGCAGTCACTACATCTATTAGGCGTAAATCAATTTTCTCTTTTACGGCCAGACTGATTAGATATCTTAATGTAGTTGCATCCACCACAGGGGAGTAAGTCTCCTCATAATCTATTCCTGGTCTCTGTGAGAATCCTTGTGCTACAAGCCGTGCTTTGTATCTCACTACTTCTCCTTTCTCATTTCTCTTTCTCACAAAGACCCATTTGTATCCCACTGGTTTGACATCA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_77

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

118

Start:

35918337

End:

35918454

Strand:

-

>A01_LTR-Copia_77

TCTCTCAGCTACACCATTTTGTTGTGGAGTATATGGGCAGCTAGTTTGGTGGATCATCCCATGTTTGGCTAAGTGTTGTTTGAAAGCATTGCTTGTGTATTCTCCTCCATTATCGGAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_78

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

118

Start:

35924726

End:

35924843

Strand:

+

>A01_LTR-Copia_78

ATCCGATAATGGAGGAGAATACACAAGCAATGCTTTCAAACAACACTTAGCCAAACATGGGATGATCCACCAAACTAGCTGCCCATATACTCCACAACAAAATAGTGTAGCTGAGAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_79

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

118

Start:

35953718

End:

35953835

Strand:

+

>A01_LTR-Copia_79

ATCCGATAATGGAGGAGAATACACAAGCAATGCTTTCAAACAACACTTAGCCAAACATGGGATGATCCACCAAACTAGCTGCCCATATACTCCACAACAAAATAGTGTAGCTGAGAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_80

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

86

Start:

35971833

End:

35971918

Strand:

-

>A01_LTR-Copia_80

CCACGAAACCTTCAGGTTGTTTTATGTATATCTCCTCTTCTAAATCTTCATTTAGAAAGGCAGTTTTAACATCCATCTGATGGATT