TBGR-Browse-Bju-LTR.LTR-Copia

ID	Class	Order	Superfamily	Length	Start	End	Strand
A01_LTR-Copia_21	Retrotransposons	LTR	LTR-Copia	385	12278747	12279131	-
A01_LTR-Copia_22	Retrotransposons	LTR	LTR-Copia	121	12279170	12279290	-
A01_LTR-Copia_23	Retrotransposons	LTR	LTR-Copia	136	12900283	12900418	+
A01_LTR-Copia_24	Retrotransposons	LTR	LTR-Copia	241	13648772	13649012	+
A01_LTR-Copia_25	Retrotransposons	LTR	LTR-Copia	372	13684454	13684825	+
A01_LTR-Copia_26	Retrotransposons	LTR	LTR-Copia	253	13732024	13732276	-
A01_LTR-Copia_27	Retrotransposons	LTR	LTR-Copia	291	14077109	14077399	-
A01_LTR-Copia_28	Retrotransposons	LTR	LTR-Copia	119	14671774	14671892	+
A01_LTR-Copia_29	Retrotransposons	LTR	LTR-Copia	85	14739033	14739117	+
A01_LTR-Copia_30	Retrotransposons	LTR	LTR-Copia	168	15155167	15155334	+
A01_LTR-Copia_31	Retrotransposons	LTR	LTR-Copia	193	16205836	16206028	+
A01_LTR-Copia_32	Retrotransposons	LTR	LTR-Copia	247	16211989	16212235	-
A01_LTR-Copia_33	Retrotransposons	LTR	LTR-Copia	276	16500106	16500381	+
A01_LTR-Copia_34	Retrotransposons	LTR	LTR-Copia	90	16630728	16630817	+
A01_LTR-Copia_35	Retrotransposons	LTR	LTR-Copia	222	16754277	16754498	+
A01_LTR-Copia_36	Retrotransposons	LTR	LTR-Copia	122	16986761	16986882	+
A01_LTR-Copia_37	Retrotransposons	LTR	LTR-Copia	122	17008813	17008934	-
A01_LTR-Copia_38	Retrotransposons	LTR	LTR-Copia	258	17406941	17407198	-
A01_LTR-Copia_39	Retrotransposons	LTR	LTR-Copia	116	19230515	19230630	-
A01_LTR-Copia_40	Retrotransposons	LTR	LTR-Copia	567	19571785	19572351	+

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

385

Start:

12278747

End:

12279131

Strand:

-

>A01_LTR-Copia_21

CCCATATCTTTCATTTCAAAGTTCTTAGAGAGATACTTCTTCACATCATGTAACATACCCATGTCATTTGCAGCAAGCAAAATATCATCAACATATAGGACTAAAATCACAAACTTACTCCCATTGATCTTAATGTAGATACATCGATCAACAATGATCTCTACAAAACCATATGATGTGATGGTATCATTAAACTTTATATACCATTGTCGAGAGGCTTGTTTTAGTCCATATATTGACTTTCTCAGCTTACACACCAAATTTTCTTTTCCTGTGACCACGAATTCTTCTGGTTGGTCCATATATACTTCCTCCTCAAGATCTCAATTCAGAAAGGCGGTTTTCACATCCATCTGGTGAAGCTCAAGATCATAATGAGCCACCA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

121

Start:

12279170

End:

12279290

Strand:

-

>A01_LTR-Copia_22

GGAGAGAAGGTCTCTTTATAGTCAATGCTATCTTTCTGGGTGAATCTTTTAGCAACAAGGCGAGACTTGCGTCTTTCAGGTTTACCTTTCGAGTCACGTTTAGTCATATAGACCCATTTAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

136

Start:

12900283

End:

12900418

Strand:

+

>A01_LTR-Copia_23

AGAGTTCACCTCAAATGAGTTTCAAGAGTTTTGCAATAAGAAAGGGATCAAACGCCACTTGACAGCGCCATATACGCCACAACAGAACGGTGTGGTTGAACGTAGGAACCGTACACTGATGGAGATGACAAGAAGC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

241

Start:

13648772

End:

13649012

Strand:

+

>A01_LTR-Copia_24

CTACCTAAGGGAAAGAAGGCTGTGTCTAGTAGATGGATCTTTACAATCAAGTACAAGGCTGATGGGCAGATTGATAGGAAGAAGTCAAGACATGTTGCAAGAGGCTTCACTTAACTTATGGATATAATTACATTGAGACATTTGCACCAGTAGCTAAGCTACATACAATCCGACTAGTACTAAGCTTGGCTGTGCATCTTGGATGAGATTTATGGCAAATGGATGTGAATAATGCCTTTCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

372

Start:

13684454

End:

13684825

Strand:

+

>A01_LTR-Copia_25

CTACCTAAGGGAAAGAAGGCTGTGTCTAGTAGATGGATCTTCACAATCAAGTACAAGGCTGATGGGCAGATTGATAGGAAGAAGTCAAGACATGTTGCAAGAGGCTTCACTTAACTTATGGATATAATTACATTGAGACATTTGCACCAGTAGCTAAGCTACATACAATCCGACTAGTACTAAGCTTGGCTGTGCATCTTGGATGAGATTTATGGCAAATGGATGTGAATAATGCCTTTCTACAAGGATAGCTTGAGGATGAAGTCTATATGCATCCTCTACCAGGCTTGGAACATTTGGTGAAAAAGGGAAACGTGTTGAGACTGAAAAAAACATTTATGGGTTGAAGCAATCACCAAGAGCTTGGTACAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

253

Start:

13732024

End:

13732276

Strand:

-

>A01_LTR-Copia_26

TACTTAACCATTCTCAACACACTCTCTTATAAAATGATATCTCTTGTGTATATGCTTACTCCTTCCATGAAAGACCGGGTTTTGTGTCAATGCTATTGCAGATTGGTTATCAATCCGAATGATCACTCTTTCACTTGGTTGGCCCGTGATCTCACATAGTAAATCTTGCAACCAAATAGCTTGTCTTGGAGCATTTGTTCCTGCCATGAACTCAGCCTCGCAAGACGACAATGCAACCGTGTCTTGTTTCTTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

291

Start:

14077109

End:

14077399

Strand:

-

>A01_LTR-Copia_27

ATGGAACCTGTAGTTCCATTCTCGAGGTGATTGCTTTAACCCGTAGAGCGACTTTCTGAGTAGACAAACCATATTTTCCTTTCCCTTCTTTATGTAACCCTCTGGTTGTTCCATGTAAACCCTCTCTTTAAGAACTCCGTGTAGAAAGGCTGTCTTCACGTCTAGCTGCTCCAGCTCTAGATCAAACTGGACTACCGCAGACAGTAGTAATCGGATGGAGACGTGTTTGACCATTGGGGCGAACACTTCGTTGTAGTCCACTCCTTCCGTTTGTGCATAGCCTTTAGCCAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

119

Start:

14671774

End:

14671892

Strand:

+

>A01_LTR-Copia_28

AGATCAGATAATGGAGGAGAGTACACCAGCAATGCATTCAAAACCCATCTAGCCAAACGGGGTGTGATCCATCAAACCAGTTGTCCATACACTCCACAACAAAATGGTGTAGCCGAGAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

85

Start:

14739033

End:

14739117

Strand:

+

>A01_LTR-Copia_29

GAAATCCATCAAATGGATGTAAAAACTGCTTTTCTAAATGGTGATTTAGAATAGGAAATTTACATGAAACAACCTGAAGGTTTTG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

168

Start:

15155167

End:

15155334

Strand:

+

>A01_LTR-Copia_30

AATGGATGTTGTAACCGCATACCTATATGGTCCACTGGATAATGAAATTTATATGAAAGTCCCAGAGGCTATAGAATTGAAAAGCAAAGAGAAATCTCGAGACCAACATTGTATTAAGTTGGAAAAATCTCTTTATGGACTGAAACAATCTGGACGGATGTGGTACAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

193

Start:

16205836

End:

16206028

Strand:

+

>A01_LTR-Copia_31

AATGGATGTTGTAACTGCATACTTATATGGGCCACTGGATAATGAGATTGATATGAAAGTACCAGAGGGTATAGAGTTGAAAAACAAATCGAGTACTCGAGAACAACACTGTATAAAGTTGAATAAATCACTTTATGGATTGAAACAATGAGGCCGAATGTGGTACAATAGACTAAGTGAGTACTTAGTGAAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

247

Start:

16211989

End:

16212235

Strand:

-

>A01_LTR-Copia_32

CTTGATCATTTTCGACGCATTCTCTTATGAAGTGAAAACGTCGGTGTATGTGTTTGCTTCGACCATGGAACACAGGATTTCTTGAAAGAGCAATAGCAGACTTGTTATCAACCTTGATTGTCACTCTCGTGCAAGACTTCCCAATGATTTCTCCAAGTAATTCTTGCAGCCACACCGCCTGTTTAGCCGCTTCTGTAGCAGCCATAAACTCTGCTTCGCAAGAGGACAATGCAACAATCTCTTGTTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

276

Start:

16500106

End:

16500381

Strand:

+

>A01_LTR-Copia_33

CCAAAAGGAGGGTATTGATTACCATGAGGTCTTCGCTCCAGTAGTGAAGCATGTATCAATACGAGTGTTGCTGTCACTTGTGGTCAATTTGGATTTAGAATTGGAGCAAATGGACGTGAAGACGGCGTTTCTTCATGGCAACCTTGATGAAGATTTATTCATGGAGCAACCCGAAGGATATGAAGACAAACAGAAGCCAGATCACGTATGTCTTCTCAAGAAGTCTTTATACGGGCTTAAGCAGTCACCTCGTCAATGGAACAAACGTTTTGATGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

90

Start:

16630728

End:

16630817

Strand:

+

>A01_LTR-Copia_34

TCAAAGTGCTATTGCACTGTCCAAGAACAATGTGCATCATGAACGCACGAAGCACATTGATGTGAAATGTCACTTCATTCGAGAAGTTAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

222

Start:

16754277

End:

16754498

Strand:

+

>A01_LTR-Copia_35

GGGTGAAAGCTTGTAAGGAGGAGATAAACTCAATCGAAAAGAACAACACTTGGCTTCTTGTTGACTTACCAAAAGGTTTCAAACCTATTGGATTAAAATGGGTATTTAAAATAAAAAGAAACGCAGACGGAAGCATCAGCAAGTACAAGGCACGATTAGTGGCAAAATGATATGTTCAAAGGCATGGTATCGACTATGATGAAGTTTTTGCACCAGTAGCTA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

122

Start:

16986761

End:

16986882

Strand:

+

>A01_LTR-Copia_36

GATCAAGACGACGACAAAAGCACAACCGGTCATATATTCTATCTTGGAGAAAGTCCAATTACATGGTGCTCACAGAAACATGACACTGTAACGCTATCATCATGTGAGGCTGAGTTCATGGC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

122

Start:

17008813

End:

17008934

Strand:

-

>A01_LTR-Copia_37

GCCATGAACTCAGCCTCACATGATGATAGCGTTACAGTGTCATGTTTCTGTGAGCACCATGTAATTGGACTTTCTCCAAGATAGAATATATGACCGGTTGTGCTTTTGTCGTCGTCTTGATC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

258

Start:

17406941

End:

17407198

Strand:

-

>A01_LTR-Copia_38

GTTTGTACCACTGCCTTGGAGCCTGCTTCAAACCGTAGAGAAACATCTTCAATCTACACACCAGATGCTCTTCTACAAGCTTTACCAAACCTTCAGGTTGCTCCATATATATTTCTTCCTCCAACTCTCCATGAAAGAAGGCCGTTTTCACATCCATCTGCTCAAGATGCAAATCCCAAACAGCTACCAAACCCAACATAGCTCTTATGGAAGTGTGTCGTACTACAGGCGAGAATAACTCGTCGTATTCTATACCTT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

116

Start:

19230515

End:

19230630

Strand:

-

>A01_LTR-Copia_39

TGCCATAAATTCGGCTTCACAAGACGAAAGTGCAACTGTTTCGTGTTTTTGTGAACACCATGTAATAGGACTGTCGGCATAGAAGAAGACATGTCCGGTTGTGCTTCTACCGTCGT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Copia_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

567

Start:

19571785

End:

19572351

Strand:

+

>A01_LTR-Copia_40

AGTTGGATACAAATGGGTCTTTGTGAGGAAAATAAATGAACATGGTGAAGTCATGAGATATAAAGCACGGCTTGTTGCACAAGGATTCTCACAGAGACCAGGAATCGATTATGAGGAGACATACTCTCCTGTGGTGGATGCTACTACTTTTAGATTCCTGATAAGTCTGACCATAAGAGAGAACTTAGACTTGCAATTAGTGGATGTAGTAACTGCATACTTATATGATCCACTGGATAATAAAATTTATATGAAAGTCCCAGAGGGTATTGAATTGAAAAACAAAGAGAGTTCTCGAGAACAACATTGCATAAAGTTGAATAAATCACTTTATGGACTGAAACAATCAGGTCGAATGTGGTACAATAGACTAAGTGAGTACCTAGTGAAAGAGGGATATATAAATGATCCGATCAGTCCCTGCATATTCATAAAGAAATTCGACAATAAAGGATTTGTGATCATAGCAGTATATGTTGATGATCTGAATATCCTAGGAACCTCTGGAGAGATTTCCCAAACAGTTGAATATCTTAAGAAAGAATTCGAAATGAAAGATCTTGGAAA