ID:

Thla_scaffold10_LTR-Cassandra_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

319

Start:

3121322  

End:

3121640

Strand:

-

>Thla_scaffold10_LTR-Cassandra_21

CCTCGACCACCCATTTCGGCGAGTCATCCATCCCTCTGTCAGACTCGTGGGCCCCGTCCCTGTTCCACAGTCGGTGCGTTATTTTTCCCGAAGCACAACCGATTTATTTACTTACCCTGCAATCACCGTATGATTTTTCCCCGTGTTTTGGTCTCACTCACACGATTTCAGGAATCACTTCCCGGAAAGTCACCATCCTAGTCCTACTCCAGCTCAAGCACCCTTAACCGTGGAGTTCTCTCGGGACTAGTGACCAAAAAAATAAGTGCATTTTGGTGACATAGGTAGCCAATTCAATCTATTTAAACTTATTCAAATG

ID:

Thla_scaffold100_LTR-Cassandra_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

321

Start:

760265  

End:

760585

Strand:

+

>Thla_scaffold100_LTR-Cassandra_22

AAGTTTAAATGAATTTATATAACTACATATGTCATCAAAATGCACTTACCGTTTCCGCTCACTTACCTTGAGAGAATTCCAGAGTTAAGCGTGCTTAAGCTGAAGTAGGACTAGGATGGGTAACCTTCCAAGAAGTACTCTGCGGAACCGTGTAAGTGAGGCCTAACACGGAGAAAAGTCACGTGGTGATTACAGGGTCAGTAAATAAATCGGTTGGGTCTCCGAGAAAAATAACACACCGACTGTGAAACAGGGGTGAGGCCCACAGGACCGAGAGAAGACATGGGTGTGCTCACTAGTAAGGGCGGTCAGGATGTTATA

ID:

Thla_scaffold101_LTR-Cassandra_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

289

Start:

112098  

End:

112386

Strand:

+

>Thla_scaffold101_LTR-Cassandra_23

ACCTATGTCACCAAAGTGCACTTATCTTTTCGGTTAGTGGGCTTGAGAGAACTCTAGAGTTAAGCGTACTTGAGCTGGGGCAGGACTAGGATGGGTGACCTTTCAGGAAGTGATTTCTGAAACCGTGTGAGTGAGGCCAAAACACGGGAAAAAATCATGTGGTGATTGCAGGGTCAGTAAATAAGTCGGCTCCAGAATAAATAACGCACCGACTGTCGGACAGGGGCGGGGCCCACGAGCCCGACGGAGGGATGGGTAACTTGTCGGTAGGAGTGACCGGGGCATTACA

ID:

Thla_scaffold101_LTR-Cassandra_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

332

Start:

355097  

End:

355428

Strand:

-

>Thla_scaffold101_LTR-Cassandra_24

TGTAACGCTTCCGACCGCTCCCACCGGCGAGTCACCCATCCTTCTGTCGGGTTTGTGGGCTTCGCCCCTGTCTGATGGCCGATGTGTTATTTTTTCTGTAGTTCAACTGACTTATTTACTGATCATGCAATCACTACATGATCTTTCCCCGTGTTTTGACCTCACTCATAGGATTTCGGGAATCACTTCCCGAAAGATCACCTATCCTAGTCCTACTCCAGCTCAAGCACCCTTAATTGTGGAGTTCTCTCGGGACCAGTGACCGAAAAGATAAGTGCACTTTGGTGACATAGGTAGCCAAATCAATTCATTTAAACTTATTCAAATGGGCC

ID:

Thla_scaffold101_LTR-Cassandra_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

332

Start:

355572  

End:

355903

Strand:

-

>Thla_scaffold101_LTR-Cassandra_25

TGTAACGCCCCCCGACCGCCCCTCTCGGCGAGTCACCTATCCCTCCGTCGGGCTCGTGGGCCCATCCCTGTTCGACGGCTGGTCCGTTATTTTTTCTGGATCCCAACCGACTTATTTACTGACCCTACAATCACCACATGATCTTTCCCCGTGTTTTGCCCTCACTCACATGGTTTCGGGAATCACTTCCCGAAAGGTCACCCATCCTAATCCTACTCTAGCTCAAGCACCCTTAACTGTGAAGTTCTCTCGGGACCAGTAACCGAAAAGATAAGTGCACTTTAGTGACATAGGTAGCCAAATCAATCCATTTAAACTTATTCAAATGGGCC

ID:

Thla_scaffold101_LTR-Cassandra_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

278

Start:

863419  

End:

863696

Strand:

+

>Thla_scaffold101_LTR-Cassandra_26

GCACTTATCGTTTCAGTCACTGGTCCCGATAGAACTCCACAGTTAAGGATGCTTGAGCTGGAGCAGGACTAGGATGAGTGACCTTTCAGGAAGTGATTTCCGAAACCGTGGGAGTGGGGTCAAAACACGGGGAAATATCATGTGGTGATTGCAGGGTCAGTAAATAAGTCAGTTGGGCTCCGGAAAAAATTACTCACCGACCGTCGGACAGGGGCGGGGCCCACGAGCCCGACAGAGGGATGGATGACTCGTCGGTAGGGGCTGTCGGAGGTGTTACA

ID:

Thla_scaffold101_LTR-Cassandra_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

318

Start:

863853  

End:

864170

Strand:

+

>Thla_scaffold101_LTR-Cassandra_27

AAGTTTAAATGGATTAATTTGGCTACCTATGTCACTAAAGTGCACATATCTTTTCGGTCACTGGTCCCGAGAGAACTCCACATTAAGGGTGCTTGAGCTGGAGCAGGACTAGGATGGGTGACCTTTCGAGAAGTGATTCCCGAAACCGTGGGAGTGAGGTCAAAACATGGGGAAATAGCATGTAATGATTGCAGGATCAGTAAATAAGTCGGTTGGGCTCCGGGGAAAATAACTCACCAACCGTTGGACAGGGACGGGGCCGACGAGCCCGATGGAAGGATGGGTGACTCGCCGGTAGGGGCGGTCGGAGGTGTTACA

ID:

Thla_scaffold102_LTR-Cassandra_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

333

Start:

500632  

End:

500964

Strand:

+

>Thla_scaffold102_LTR-Cassandra_28

TGGTCCATTTGAATAAGTTTAAATGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTATCTTTTCGGTCACTGGTCCCGAAAAAACTTCACAGTTAAGGGTGCTTGAGCTGGAGTAGGACTAGGATGGGTGACCTTTCGGGAAGTGATTCCCGAAACCGTGTGAGTGAGGCCAAAACATGAGAAAAAATCATGTGGTGATTGCAGGGTAAGCAAATAAGCCGGTTGGGCTCCGGGAAAAATAACGCACCGACCGTCGGACAGAGGCGGGGCTCACGAGCCCGACAGAGGGATGGATGACTCGCCGAAATGGGCGGTCGGGGGCGTTACA

ID:

Thla_scaffold103_LTR-Cassandra_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

305

Start:

629764  

End:

630068

Strand:

-

>Thla_scaffold103_LTR-Cassandra_29

CNTACCGGTAAGCACACCCACGTCCTTTCTTGTGGGCCCCACCCCTGTCCGTCGGTCAGTGCGTTATTTTTCCTAGAGTCCAACTGACTAATTTACTGACCCTGCTATTATCACATGATCTTTTTCTGTGTTTCGGCTTCACTCGCATGGTTTTGGGAATCACTTCCCGAAAGGTCACCCATCTTAGTCCTGCTCCAGCTCAAGCACGCTTAATTTTGGAGTTCTCTCAGGCCCACTAATCAAAAAGATAAGTGCAGTTTGGTAACATAGGTAGCCAAATCAATCCATTTAAACTTATTCAAATG

ID:

Thla_scaffold103_LTR-Cassandra_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

279

Start:

631008  

End:

631286

Strand:

-

>Thla_scaffold103_LTR-Cassandra_30

TGTAACGCCTCCCGACCGCCCATGTCGGTGAGCACACACACGTCCTCTCTCGGGCCCGTGGGCCGACGCAATAGACTTATTTACTGACTCTGCAATCACCACATTTTTTCTCGTGTTTTGGCCACACGGTTTCGGGAATCATTTCCTGAAAGGTCACCCATCCTAGTCCTGCTCCAGCTAAAGCACACTTAACTCTGAAGTTGTCTCAGACCCACTAACCGAAAAGATAAGTGCACTTTGGTGACATAGGTAGTCAAATCAATCCATTTAAACTTATTC

ID:

Thla_scaffold104_LTR-Cassandra_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

319

Start:

592894  

End:

593212

Strand:

-

>Thla_scaffold104_LTR-Cassandra_31

TATAACACCCCTCGAGCGCCCCTACCGGCGAGTCACCCATCCCTACGTCAGGCTCGTGGGCCCCGCCCCTATTTGACGGTCGGTGCGTTACTTTTCCCGAAGCCCAACCGACTTATTTACTGACCTGCAATCACCACATGATTTTCCCCCGTGTTTTAGCCTCACTCACAAGGTTTCGGGAATCACTTCCCGTAAGGTCACCCATCCTAGTCCTGCTCCAGCTCAAGCACGCTTAACACTGGAGTTCTCTCAGGTCCACTAACCGAAAAGATAAGTGCACTTTAATGACATAGGTAGCCAAATCAATCCATTTAAACTT

ID:

Thla_scaffold104_LTR-Cassandra_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

593369  

End:

593696

Strand:

-

>Thla_scaffold104_LTR-Cassandra_32

TATAACACCCCTGACCGCCTCTACCGGCGAGTCACCCATCCCTTAGTCGAGCTCGTGGGCCCTGCCCCTGTCCGACGGTCAGTGCGTTATTTTTCTCGGAGCCCAGTCGGCTTATTTACTGACCCTGAAATCACCACATGATCTTTCCCTGTTTTTTGGCCTCACTCACACGGTTTCGGGAATCTCTTCCCGAAAGGTCACCCATCCTAGTCCTGCTCCAGCTCAAGCACGCTTAACTCTAGAGTTCTCTCAAGCCCGCTAACCGAAAAGATAAGTGTACTTTGATGACATAGGTAGCCAAATTAATCTATTTAAACTTATTCAAATG

ID:

Thla_scaffold106_LTR-Cassandra_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

321

Start:

28139  

End:

28459

Strand:

+

>Thla_scaffold106_LTR-Cassandra_33

AAGTTTAAATGGATTAATTTGGGTACCTATCTCATCAAAGTGCACTTATCTTTTCGGTTAGTGTGCCTGAGAGAACTCCACAGTTAAGGGTTCTTGAGCTGGAGTAGAACTAGGATGGGTGACCTTTCGGGAAGTGATTCCCGAAACCGTGTGAGTGAGGCCAAAACACGGTAAAAGATCATGTGGTGATTGTAGGGTCAGTAAATAAGCCAGTTGGGCTCCGGAAAAAATAACGCACCAGCCGTCGAATAGGGATGGGGCCCACGGGCCCAGGAAAGGACGTGGGTGTGCTTACCGGTAAGGGCGGTCGAGGGTGTTACA

ID:

Thla_scaffold106_LTR-Cassandra_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

320

Start:

28603  

End:

28922

Strand:

+

>Thla_scaffold106_LTR-Cassandra_34

AGGTTTAAATGGATTGATTTGGCTACCTATGTCACCAAAGTGCACTTATCTTTTCGGTTAGTGGGTCTGAAAGAACTCCGTAGTTAAGCGAGCTTGAGCTGGAGTAGGACTAGGATGAGTGACCTTTCGGGAAGTGATTCCCGAAATCGTGTGAATGAGGCCAAAACACGGGGAAAGATCATGTGGCGATTATATGGTTAGTAAATAAATCGGTTGTGCTCCGAGTAAAAATAATACACCGACCGTCGGACAGGGGCGGGGCCCATGAGCCCGACAGAGGGATGGGTGACTCACCGGTGGGGGTAGTCGGGGGCATTACA

ID:

Thla_scaffold106_LTR-Cassandra_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

159

Start:

29070  

End:

29228

Strand:

+

>Thla_scaffold106_LTR-Cassandra_35

CATTTGAATAAATTCAAATGAATTAATTTGGCTACCTATGTCACCAAAGTGCACTTATCTTTTCAGTCACTAGTCCTGAGAGAACTCCACAGTTAAGGGAGCTTGAGCTAGAGTAGGACTCGGATGGGTGACCTTTCGGGAAGTGATAATTGTAACGAT

ID:

Thla_scaffold106_LTR-Cassandra_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

345

Start:

149693  

End:

150037

Strand:

-

>Thla_scaffold106_LTR-Cassandra_36

TGTAACACCCTAACACCTTTCCACCAGTGAGGCTCCACGTTTGTTTTTGAACTTGTGATCTGCATCTGACGGTCGATGCATTAACCGGTAGATTTGAAAGTTATGATATATTGATTATTTTATTGCTATACGATTTTTTTTCGTAGTTTGTCCTCATTCACACGGTTCTGGAAATCACTTTCCAAAAAATCATATATTCTAATACTATTCCAGCTTAAGCACATTTAATTCTGGAGTTCTCTCAGGACCAGTGACCGAATAGATAAGTGCATTTTGGTAACATAGGTAGCTAAACCAATTCTTTTAAGCCTCTCCACATATACATTCATAAATCGGGATGTTATA

ID:

Thla_scaffold108_LTR-Cassandra_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

321

Start:

193273  

End:

193593

Strand:

-

>Thla_scaffold108_LTR-Cassandra_37

CCCCGACCGTCCATTCCGGTGAGTCACCTATCCCTCCGTCGGGCTCGTGGGCCCTGCCCATGTCCGACAGTCGGTGCGTTAGTTTTTCCCGGAGCCCAACCGACTTATTTACTGACCCTGCAATCACCATATGATCTTTTTCTTTGTTTTGCCCTCGTTCATACGGTTTCGGGAATCACTTCCCGAAAGGTCACCCATCCTAGTCATACTCTAGCTCAAGCACCCTTAACTGTAGAGTTCTCTCGGGACCAGTGACCGAAAAGATAAGTGCACTTTGATGACATAGATAGCCAAATTAATCCATTTAAACTTATTCAAATG

ID:

Thla_scaffold108_LTR-Cassandra_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

319

Start:

193741  

End:

194059

Strand:

-

>Thla_scaffold108_LTR-Cassandra_38

TGTAATGCCCCCGACCGCCCATTATGGAGAGTCACCCATCCCTTCGTCGGGCTCGTAGGCTCCGCCCCTATCCGACAAGCAGTGCGTTATTTTTCCCGGAGCCCAACCGACTTATTAACTGACTCTGCAATCACCACATGATCTTTCTCAGTGTTTTGCTTTCACTCACACGGTTTCGGGAATCATTTCCCGAAAAGTCACCCATCCTAGTCCTACTCCAGCTCAAGCACCCTTAATTGTGGAGTTTTCTCGGGACCAGTAACCGAAAAGATATGTGCACTTTGATGACATAGGTAGCGAAATTAATCAATTTAAACTT

ID:

Thla_scaffold108_LTR-Cassandra_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

343

Start:

194216  

End:

194558

Strand:

-

>Thla_scaffold108_LTR-Cassandra_39

TGTAACGCCCCTGACCGCCCATTCCGGCGAGTCACCCATCCCTCCGTCAGGCTCGTGGGCCCCGCTCCTGTCCGACGGTCGGTAAGTTATTTTTCCCGGAGCCCAACCGACTTATTTACTGACTCTGCAATCACCACATGATATTTTCCCGTGTTTTGTCCTCACTCAAACGGTTTCGGAAATCACTTTCCGAAAGGCTACCCATTCTAGTCCTACTCCAGCTCAAGCACCATTAACTGTGGAGTTCTCTCGGGACCAGTGACCGAAAAGATAAGTGCACTTTAATGACATAGGTAGCCAAATTAGTCCATTTAAACTTATTCAAATGGACCGGACCCTGTTC

ID:

Thla_scaffold109_LTR-Cassandra_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

120

Start:

650013  

End:

650132

Strand:

+

>Thla_scaffold109_LTR-Cassandra_40

TATAACATTCCCGAAAAATATGAATATATATGAAGGGGTTTAAAATAATTAATTTGGCTACCTATGTCCAAAGAATACTTATCTTTTCGATCATTGGTCGTTATAGAATTCAAAAGTTAA