ID Class Order Superfamily Length Start End Strand View
Thla_scaffold11_LTR-Cassandra_61 RetrotransposonsLTRLTR-Cassandra32824270112427338-
Thla_scaffold11_LTR-Cassandra_62 RetrotransposonsLTRLTR-Cassandra23535744183574652-
Thla_scaffold11_LTR-Cassandra_63 RetrotransposonsLTRLTR-Cassandra33337631483763480-
Thla_scaffold11_LTR-Cassandra_64 RetrotransposonsLTRLTR-Cassandra33239082213908552+
Thla_scaffold11_LTR-Cassandra_65 RetrotransposonsLTRLTR-Cassandra32839085753908902+
Thla_scaffold111_LTR-Cassandra_66 RetrotransposonsLTRLTR-Cassandra207829715829921-
Thla_scaffold112_LTR-Cassandra_67 RetrotransposonsLTRLTR-Cassandra263185417185679+
Thla_scaffold112_LTR-Cassandra_68 RetrotransposonsLTRLTR-Cassandra89185716185804+
Thla_scaffold113_LTR-Cassandra_69 RetrotransposonsLTRLTR-Cassandra323142040142362+
Thla_scaffold113_LTR-Cassandra_70 RetrotransposonsLTRLTR-Cassandra332142506142837+
Thla_scaffold113_LTR-Cassandra_71 RetrotransposonsLTRLTR-Cassandra319590714591032+
Thla_scaffold113_LTR-Cassandra_72 RetrotransposonsLTRLTR-Cassandra319591188591506+
Thla_scaffold114_LTR-Cassandra_73 RetrotransposonsLTRLTR-Cassandra325420800421124+
Thla_scaffold114_LTR-Cassandra_74 RetrotransposonsLTRLTR-Cassandra321421277421597+
Thla_scaffold115_LTR-Cassandra_75 RetrotransposonsLTRLTR-Cassandra2792507825356-
Thla_scaffold115_LTR-Cassandra_76 RetrotransposonsLTRLTR-Cassandra852543625520-
Thla_scaffold115_LTR-Cassandra_77 RetrotransposonsLTRLTR-Cassandra3082999130298-
Thla_scaffold115_LTR-Cassandra_78 RetrotransposonsLTRLTR-Cassandra853037830462-
Thla_scaffold115_LTR-Cassandra_79 RetrotransposonsLTRLTR-Cassandra2073226632472-
Thla_scaffold115_LTR-Cassandra_80 RetrotransposonsLTRLTR-Cassandra326108028108353+

< 4 5 6 7 8 > Total 42


Thlaspi arvense (v1.1)

ID:

Thla_scaffold11_LTR-Cassandra_61

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

2427011  

End:

2427338

Strand:

-

>Thla_scaffold11_LTR-Cassandra_61

TGTAACTCTTCTGACTGTTCTTACCAGCGAGTCACCCATTTCTTTGACAAGTTCGTGGGCTCTGTTCCTATTCAACGGCCGGTGTATTATTTTTTTTGGAGTCCAACCGACTTATTTACTGACCCTGCAATCAGCACATGATCTTTCTCCGTGTTTTGGCCTTATTCACACGGTTTCGTGAATCACTTTCCGAAAGGTCACCCATCTTAGTGCTGCTCGAGTCCAAACACGCTTAACTCTCGAGTTTCCTCAGGCTCACTAATCGAAAAGATAAGTGCACTTTGGTGACATATGTAGCCAAATTAATCCATTTAAACTTATTCAAATG

Thlaspi arvense (v1.1)

ID:

Thla_scaffold11_LTR-Cassandra_62

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

235

Start:

3574418  

End:

3574652

Strand:

-

>Thla_scaffold11_LTR-Cassandra_62

TCTCGGAGGTCCGACCGACTTGTTTACTGACCTTGCAATCACCACATGATCTTTCCCCGTGTTTTGGCCTTACTCACACGGTTTCGGAAATCACTTCCCGAAAGGTAAACCATCCTAGTCCTGCCCTAGCTCGAGCATGCTTAACTCTAGATTTCTCTCAGGCCCACTAACCGAAAAGATAAATGCACCTTTGTGACATAGGTAGCCAAATTAATTCATTAAACTTATTCAAATG

Thlaspi arvense (v1.1)

ID:

Thla_scaffold11_LTR-Cassandra_63

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

333

Start:

3763148  

End:

3763480

Strand:

-

>Thla_scaffold11_LTR-Cassandra_63

TGTAACGCCACGACTGCCTTTACCGGTGAACACATTTACTTTCTCTCTCGGGTCCGTGGGCCTCACTCCTACCCGACGGCCAGTGCGTTATTTTTGCGTAGACCCGGCCGACTAATTTACCAACTCTGCAATCACTACATGATCTTTCTCTGTATTTTGGCCTCACTCACACAGTTTTGGGAATCAATTCCCGAAAGGTCACCCATCTTAATCCTGCTCCAGCTTAAACATGCTTAACGCTGGAGTTATCTCAGGTCCACTAACTGAAAAAATAAGTGTACTTTGGTAACATATGTAGCCAAATCAATCCATTTAAACTTATTCAAATGAGCC

Thlaspi arvense (v1.1)

ID:

Thla_scaffold11_LTR-Cassandra_64

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

332

Start:

3908221  

End:

3908552

Strand:

+

>Thla_scaffold11_LTR-Cassandra_64

GGTCCATTCGAACAAGTTTTAATAGATTAATTTGGCTATTTATGTTATCAAAGTGCATTTATCTTTTCGGTTAGTGGTTCTGAGAGAATTTCAGAGTTAAGTGTGCTTGAGCTGGAGAAGGATCAGGATGGGTGACCTTTCGGGAAGTGATTCCCGAAACTGTGTGAGTGAGGCCAAAACACGGGGAAAGATCATGTAGTGATTGCAGGGTCAGTAAATAAGTCGGTTGGGCTCCGGGAAAAATAACACACCGGCTGTCGGACAGGGGCGGGGCCCATGAGCCCGACGGAGGGATGGGTGACTCTCTGGTAGGGGCGGTCGGGGGTGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold11_LTR-Cassandra_65

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

3908575  

End:

3908902

Strand:

+

>Thla_scaffold11_LTR-Cassandra_65

GGCTCATTTGAATAAGTTTAAATGGATTGATTTGGCTACCTATGTCATCAAAGTGCACTTATTTTTTCGGTCACTGGTCCCGAGAGAACTTCACAGTTAAGGGTGCTTGAGCTGGAGTAGGATTATGATGGGTGACTTTTCGCGAAGTGATTTCCGAAATCGTGTGAGTGAGACCAAAATACGGAAAAAAAATCATATGGTGATTGCAGGATTAGTAAATAAGTAGGTTGGGCTTCGGAAAAATAACGCACCGTTGGGGAGGAACATGGCCCATAAGCCCGATAGAGGGATGGATAACTCGTCGATAAAACCGGTTGGAGGCGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold111_LTR-Cassandra_66

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

207

Start:

829715  

End:

829921

Strand:

-

>Thla_scaffold111_LTR-Cassandra_66

AATCATTACATGATATTTATTTATGATTTGTTCTCATTACACAGTAGCAGAAATCACTTTACAATAAATCACATATCGTTAAATTTCTCTATATCAAACATATTTAACTCTAATTCGACATAAAAGATAAATATATATTTTAGCGATATATATAGTCAAATCAATGTTTTTAAATCTCGACATATATTTTATAAATCGGGTGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold112_LTR-Cassandra_67

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

263

Start:

185417  

End:

185679

Strand:

+

>Thla_scaffold112_LTR-Cassandra_67

AAATAATTATTTGGCTGTATATTCATCAAAGTGTATTTTTGTTTCCATCTCTATTCTTGTTATAATTTAAAAGTGAAGCATGCTTGTAATTTAGGAATAGGTGACCTATTGATAAGTTATTTTTGGTACCGTGTAAATGAGCAAAAAACATTTAAGCAGATTTGGTGGTGATTTGCAAGATCAGAAAGCAGGTCTCCCAAAGTGGCACACCAGCCATCGAAAGTGGGTGGAGCCCACGAGACGAGAAAGGGTGTGGGGACCCA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold112_LTR-Cassandra_68

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

89

Start:

185716  

End:

185804

Strand:

+

>Thla_scaffold112_LTR-Cassandra_68

TGGTACTAGTACTGAACCCAGACGAGTATGGAGTTATGTGGTCTCACACCATAGAGGATGACGTACTTCGTTCAGAATGAAGATGTTGC

Thlaspi arvense (v1.1)

ID:

Thla_scaffold113_LTR-Cassandra_69

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

323

Start:

142040  

End:

142362

Strand:

+

>Thla_scaffold113_LTR-Cassandra_69

GAATAAGTTTAAACGGATTGATTTGGCTACCTATGTTATAAAAGTGCACTTATCTTTTCGGTCACAGGTCCCGAGAGAACTCCACAGTTATGGGTGCTTATGCTGGAGTAGGACTAGGATGGGTGACCTTTCGGGAAGTGATGCCCGAAACCGTGTGAGTGAGGCCAAAACACGGGGAAAGATCATGTGGTGATTGCAAGGTTAGTAAATAAGTCGGTTGGGGTCCGGGAAAAATAACGCACCGACTGTCGGACAGGGGCGGGGCCCACGAGCCCGACGGAGGGATGGGTGACTCGGCGGTAGGGGCGGTCGGGGGCATTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold113_LTR-Cassandra_70

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

332

Start:

142506  

End:

142837

Strand:

+

>Thla_scaffold113_LTR-Cassandra_70

GGCCCATTTGAATAAGTTTAAATGGATTGATTTGGCTACCTATGTCATAAAAATGCACTTATTTTTTCGGTCACAGGTCCCGAGAGAACTCCACAGTTATGGGTGCTTATGCTGGAGTAGGATTAGCATGGATGACCTTTCGGGAAGTGATGCCCGAAACCGTGTGAGTGAGGCCAAAACACGGAGAAAGATCATGTGGTGATTGCAGAGTCAGTAAATAAGTCGGTTGGGGTCCAGGAAAAATAACGCACTGACTGTCGGACAGGGGCGGGGCCCACGAGCACGACGGAAGGATGGGTGACTCACCGGTAGGGGCGGTCGGGGGCATTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold113_LTR-Cassandra_71

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

319

Start:

590714  

End:

591032

Strand:

+

>Thla_scaffold113_LTR-Cassandra_71

AAGTTTAAATGGATTAATTTGGCTACCTATGTCACCAAAGTGCATTTATCTTTTCGGTCACTGGTCCTAAGAGAACTCCACAATTAAGAGTGCTTATGCTGGAGTAGGACTAGGATGGGTGACCTTCCGGGAAGTGATTCCCGAAACTATGTGAGTGAGGCCAAAACACGGAGAAAGATCTTGTGGTGATTGCAGGGTCAATAAATAAGTCGGTTGGGCTCCGGGAAAAATAACGCACCTACTGTCGGACAGGGGCGGGGCCCACGAGCCCGACAGAGGGATGGGTGACTCGCCGGAATGGGCGGTCGGGGGCGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold113_LTR-Cassandra_72

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

319

Start:

591188  

End:

591506

Strand:

+

>Thla_scaffold113_LTR-Cassandra_72

AAGTTTGAATGGATTAATTTGGCTACCTATATCACCAAAGTGCACTTATCTTTTTGGTCACTGGTCCCGAGAGAACTCCACAGTTAAGGGTGCTTATGCTGGAGTAGGACTAGGATGGGTGACCTTTCGGGAAGTGATTCTCGAAACTGTGTGAGTGAGGCCAAAACACGGAGAAAGATCTTGTGGTGATTGCAGGGTCAGTAAATAAGTCGGTTGAGCTCTGGAAAAAATAACGCACCGACCGTCAGATAGGAGCGGGGCCCACGAGCCCGACGGAGGGATGGGTGACTCGCCGGAATGGGCGGTCAAGGACGTAACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold114_LTR-Cassandra_73

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

420800  

End:

421124

Strand:

+

>Thla_scaffold114_LTR-Cassandra_73

CATTTGAAGAAATTTAAATGGATTGATTTGGTTATCTATGTCATTAAAGTGCACTTATATTTTTGGTTAATGTGCCTGAGAGAACTCCAGAGTTAGTGCTTGAGCTGGAGCACAACTAGGATGGGTGACCTTTTGGGAAGTGATTTCCAAAACAGTATGAATGAGGCCAAAACACGGAGAAACATCATGTCGTGATTGCAGGGTCAGTACATAAGTCGGTTGGCCTCTGAAAAAAATAGCGCATCAGCCGTCGGATAGGGACGGGGCCCACGAGCCCGACGGAGAGATGGGTGACTCGCCGGTAAGGGCGGTCGGGGGCGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold114_LTR-Cassandra_74

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

321

Start:

421277  

End:

421597

Strand:

+

>Thla_scaffold114_LTR-Cassandra_74

GAATAAATTTAAATAGATTGATTTGGCTACCTATGTCACCAAAGTGCACTTATCTTTTCGGTTAGTGGGCCTGAGAGAACTCCAGAGTTAAGCGTGCTTGAGGTGGAGCACGACTAGGATGGGTGACCTTTCGGGAAGTGATTCCCGAAACCGTGTGAGTGAGACCAAAACACGGAAAAGATCATGTGGTGATTGCATGGTTAGTAAATAAGTCGGTTGGGCTCCGGGAAAAATAATGCACCGGCCGTCAGATAGGAGCAGGGCCCACGAGCCCGACGGGGGATGGGTGACTCGCCTGTAGGGGCGGTCGGGGGCGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_75

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

279

Start:

25078  

End:

25356

Strand:

-

>Thla_scaffold115_LTR-Cassandra_75

TGTAACGCCTCGACTGCCCCTACCGGAAAGCACACCCACGTCCTCTCTCAGACCCCTGGACTCCACCCCTGTCTGACTGTCGGCGCATTAACCGTGAGGCTTGAAAGTTATGATATACTGACCCTGCAATCACCATATGATTTTTTCCCGTGTTTTGTCCTCACTCATATGATTAAAGAAATCATTTCCCAAAAGGTCACACATCCTAGTCCTACTCCAGCTCAAGCACCTTTAATTGTGCAGTTCACTCGGGACCAGGAACCGAAAAATATGTGCATT

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_76

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

85

Start:

25436  

End:

25520

Strand:

-

>Thla_scaffold115_LTR-Cassandra_76

TACCTATGAGCACCCACATCAGCTCTCGGGGCCGTGGGCCTCACCCCTGTCTAACGGTCGGTGCGTTAGACGGGAGGCTCAAAAG

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_77

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

308

Start:

29991  

End:

30298

Strand:

-

>Thla_scaffold115_LTR-Cassandra_77

TGTAACGCCTCGACTGCCCCTACAGGAGAGCTCACCCACATCCTCTCTCAGACCCGTGGATGTGGCCAATAAACTGTTTGACGGCCGGTGCATTAAACTGTCTGACGGCCGGTGCATTAAACGATATGCTTGAAAGTTATGATATACTGACCCTGCAATCACCATATGATCTTTTTCCGTGTTTTGTCCTCACTCATACTATTTCGGAAAACACTTCCTAAAAGGTCACACATCCTAGTCCTACTCCGGCTCAAGCACCCTTAATTGTGGAGTTCACTCGGGACCAGTAACCAAAAAATAAGTGCATT

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_78

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

85

Start:

30378  

End:

30462

Strand:

-

>Thla_scaffold115_LTR-Cassandra_78

TACCTATGAGCACCCCCATCAGCTCTCGGGGCCGTGGGCCTCACCCCTGTCTGGCGGTCAGTGCGTTAGACGGGAGGCTCGAAAG

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_79

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

207

Start:

32266  

End:

32472

Strand:

-

>Thla_scaffold115_LTR-Cassandra_79

AATCACCACATGATCTTTCCCTGTGTTTTTTCCTCACTCACACGATTTCAGAAATCATTTCTCGAAAGGTCACCCATCCTAGTCCTACTCCAGCTCAAGCACCCATAAATGTGGAGTTCTCTTGTACTTTAGTGATATAGATAGCCAAATAAATTCTCTTAAGCCTCTCTACATATACATTCATACTCCTTAAATCGGGATGTTACA

Thlaspi arvense (v1.1)

ID:

Thla_scaffold115_LTR-Cassandra_80

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

326

Start:

108028  

End:

108353

Strand:

+

>Thla_scaffold115_LTR-Cassandra_80

CATTTGAATAGGTTTAAATGGATTGATTTGGCTACCTATGTCACCGAAGTGCACTTATCTTTTCGGTTAGTGGGCCTGAAAGAACTCCACAGTTAAGTGTGCTTGAGCTGGAACAGGACTAGGATGGGTGACCTTTCGGGAAGTGAATTTTGAAACCTTGTGAGTGAGGCCAAAACACGGGGAAAGATCATGTGGTGATTGCAGGGTCAGTAAATAAGTCGGTTCAGCTCCGGGAAAATAACGCACCAGCCGTCAGACAGGGGCGGGGCCCACGAGCCTGACAGAGGGATGGGTAACTCGCCGCTAGGGACGGTCGGGGTGTTACA