ID Class Order Superfamily Length Start End Strand View
Contig00143_LTR-Cassandra_21 RetrotransposonsLTRLTR-Cassandra3142464924962-
Contig00143_LTR-Cassandra_22 RetrotransposonsLTRLTR-Cassandra3622672727088+
Contig00143_LTR-Cassandra_23 RetrotransposonsLTRLTR-Cassandra3622719227553+
Contig00199_LTR-Cassandra_24 RetrotransposonsLTRLTR-Cassandra3591836718725+
Contig00199_LTR-Cassandra_25 RetrotransposonsLTRLTR-Cassandra3571882819184+
Contig00451_ERROPOS173133_LTR-Cassandra_26 RetrotransposonsLTRLTR-Cassandra28352935575+
Contig00451_ERROPOS173133_LTR-Cassandra_27 RetrotransposonsLTRLTR-Cassandra3376508565421-
Contig00451_ERROPOS173133_LTR-Cassandra_28 RetrotransposonsLTRLTR-Cassandra230109133109362+
Contig00451_ERROPOS173133_LTR-Cassandra_29 RetrotransposonsLTRLTR-Cassandra282133809134090+
Contig00526_LTR-Cassandra_30 RetrotransposonsLTRLTR-Cassandra3253678237106-
Contig00526_LTR-Cassandra_31 RetrotransposonsLTRLTR-Cassandra3594475945117-
Contig00526_LTR-Cassandra_32 RetrotransposonsLTRLTR-Cassandra3594931649674-
Contig00526_LTR-Cassandra_33 RetrotransposonsLTRLTR-Cassandra3184977950096-
Contig00547_LTR-Cassandra_34 RetrotransposonsLTRLTR-Cassandra3561063710992-
Contig00553_ERROPOS107991_LTR-Cassandra_35 RetrotransposonsLTRLTR-Cassandra3587953279889+
Contig00553_ERROPOS107991_LTR-Cassandra_36 RetrotransposonsLTRLTR-Cassandra3597999380351+
Contig00555_ERROPOS400000+_LTR-Cassandra_37 RetrotransposonsLTRLTR-Cassandra3391638716725+
Contig00555_ERROPOS400000+_LTR-Cassandra_38 RetrotransposonsLTRLTR-Cassandra3411688917229+
Contig00555_ERROPOS400000+_LTR-Cassandra_39 RetrotransposonsLTRLTR-Cassandra3276141361739-
Contig00563_LTR-Cassandra_40 RetrotransposonsLTRLTR-Cassandra3377733377669+

< 2 3 4 5 6 > Total 49


Isatis indigotica (v1.0)

ID:

Contig00143_LTR-Cassandra_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

314

Start:

24649  

End:

24962

Strand:

-

>Contig00143_LTR-Cassandra_21

TATAACGTCCCAAATGCTTCTACCAGTGAACCCTATGTCTTTTCATTAGGTCAATGGGCTGGCTCACCCCACTCCGACAGTCGGTGCGTTAACCGAGAGGTTTGAGAGTCATGATATACTGACCCTACAATCACCACATTACTGTTCCCGTGTTTTGTTCTTACTCACACGATAACGCGAATGACTTCCCGGTAGGTCATCGATCATTTGACTACTTCAGCTCAAACACCCTTAACTCTAGAGTTCTCTCTGGATATGTGACCGAAAAAATAAGTATACTTTGGTGACATAGTTTACCAAATCAATTCTTTTAA

Isatis indigotica (v1.0)

ID:

Contig00143_LTR-Cassandra_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

362

Start:

26727  

End:

27088

Strand:

+

>Contig00143_LTR-Cassandra_22

TGTAACATCCCGATTTCTGGTATATATGGAAACATATGTGGGAGAGGTTAAATGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAACTCCAGAGTTAAGCGTGCTTGGGCTGGAGTAGTCAAAGGATGGGTGACCTACCGGGAAGTGATTCGCGGTATCGTGTGAGTTAGGAAAAAAACACGGGGAACGGTCATGAGGTGATTGCAGGGACAGTATATCATGACTTTCGAGCCTCCCAAAAATAACGCACCGACCGTCGGACAGGGGTGGGGTCCACGAGCCCGACTGAGGGATGGGTGACTCACCGGTAGGGGCGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00143_LTR-Cassandra_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

362

Start:

27192  

End:

27553

Strand:

+

>Contig00143_LTR-Cassandra_23

TGTAACATCCCAATTTCTGGTATATATGGAAACATATGTGGGAGAGGTTAAATGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAACTCCAGAGTTAAGCGTGCTTGGGTTGGAGTAGTCAAAGGATGGGTGACCTACCGGGAAGTGATTCGTGGTATCGTGTGAGTTAGGAAAAAAACACGGGGAACGGTCATGAGGTGATTGCAGGGACAGTATATCATGACTTTCGAACCTCCCAAAAATAACGCACCAACCGTCGGACAGGGGTGGGACACACGTGCCCGACTGAGGGATAGGTGACTCACCGGTAGGGGCGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00199_LTR-Cassandra_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

18367  

End:

18725

Strand:

+

>Contig00199_LTR-Cassandra_24

TGTAACATCCCGATTTCTGATATATATTTGGAAACATATGTGGGAGAGGTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAACTCTATAGTTAAGCGTGCTTGAGCTGGAGTAGTCAAAGAATGGATGACCTACCGGGAAGTCATTCGCGGTATCGTGTGAATTAGGAAAAAACACGGGAAACGGTCATGTGGTGATTGCAGGGACAATATATCAGGACTTTCGAGCATCCCGAATAACGCACCGACCGTCGGACAGGGGTGGGGTCCACGAGCCCGCGAGGGATGGGTGACTCACCAGTAAGGGTGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00199_LTR-Cassandra_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

357

Start:

18828  

End:

19184

Strand:

+

>Contig00199_LTR-Cassandra_25

TGTAACATCTCGATTTCTGGTATATATGGAAATAATTGTGGGAGAGGTCAAATAATTGATTTGGCTATCTAAGTCACTAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAAATCCAGAGTTAAGCGTGCTTGAGCTGGAGTAGTAAAGGATCGGTGACCTACCGGAAAGTCATTCGCGGTATCGGGTGAGTTAGGAAAAAACACGGGAAACTGTCATGTGGTGATTGCAGGAACAATATATCAGGACTTTCGAGCCTCCCGAATAACGCGCCTACCGTCGGACGTGGGGTGGGGCCCACGAGCCCGACTGAGGGATGGTGACTCACCGGTAGGGATGGTTGGGACGTTATA

Isatis indigotica (v1.0)

ID:

Contig00451_ERROPOS173133_LTR-Cassandra_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

283

Start:

5293  

End:

5575

Strand:

+

>Contig00451_ERROPOS173133_LTR-Cassandra_26

CACCAAAGTGCACTTACTTTTTCGGTCACACATCCGGAGAGAACTCTATGGTTAAGCGTGCTTGAGCTGGAGTAGTCAAATGATGAGTGACCTACTGTAAAGTCATTCTCGATACCGTATGAGTAAGCAAAAAACACATAAATAGTCATGCAGTGATTGGAGTGTCAGTAAACAAGTCTCCCGAACTTTCCAAAAATAGTGCACCGACTGTTGGACAAGGATGGACCCATATGCCCGAGTGAGTGGGTTTGGGTCTATAGGTAAAGGCGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00451_ERROPOS173133_LTR-Cassandra_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

337

Start:

65085  

End:

65421

Strand:

-

>Contig00451_ERROPOS173133_LTR-Cassandra_27

CCCCTACTAGTGGGCTTCCACGCCCGTTCTCTCAGGCTCGTGAGCCCACCCCTGTCTGGTGGTCTGTTCATTATTTTTGGGAAGATCTAGAGACTTGTTTCCTGACCCTGCAATCATCACGTGACAATTCCCCATTTTTGTCCTCACTCACACGATACCGAGAATCACTTCCTGATATGTCATCCATCCTTTGACTACTCCAGTATGCTTAACCTCTGGAGTTCTCTTTGGAGGTGTGACAGAAAATCCATGTGCACTTTGATGACATAGGTAGCCAACTCTGTTCTCTTAAGCGTCTTTACATACATCACCATATACTAGAAATTGGGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00451_ERROPOS173133_LTR-Cassandra_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

230

Start:

109133  

End:

109362

Strand:

+

>Contig00451_ERROPOS173133_LTR-Cassandra_28

TGTAACATCCCGATATCTGGTATATATGAAAACGTATAGGAAAGGTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAGTGCATTACCTTTTCGGTTAACCATCCGGAAAGAACTCTAGAGTTAAGCGTGCTTGAGCTGGATTAGTCCAAGGATGGGTGACTACCGGGAAGTCATTCGCGGTACAGTGTTAGTGAGGCCAAAACACGGGGAACGGTCATGTGGTGATT

Isatis indigotica (v1.0)

ID:

Contig00451_ERROPOS173133_LTR-Cassandra_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

282

Start:

133809  

End:

134090

Strand:

+

>Contig00451_ERROPOS173133_LTR-Cassandra_29

TATCACCAAAGTGTACTTACCTTTCCGGTTGCACACCCAGAGAGAACTTCATAGTTCAGCGTGGTTGAGCTGGAGTAGTCAAATGATGGGTGACCTACCTAGAAGTCATTCGCAGTATCGTGTGAGTGAGGCCAAAACACGTGGAACGGTCATGTGGTGATTGCAGGGTCAGTATATCATGAATTTTGAGCCTTCGGTTAAAGATTAACGCACCGACCGTTGGACAGCCATGGGCTTAGTGAAGACATGGGAGCTCATTGGTAGGGGCGGTTGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00526_LTR-Cassandra_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

36782  

End:

37106

Strand:

-

>Contig00526_LTR-Cassandra_30

CCCATCTCTCTGTTGGGCTCGTGGGCCCCATCCCCGTCCGATGGTCGGTGTGTTAAGCGGGAGGCTCGAAAGTCAGGATATACTGACCCTACAATCACTACATGACTGTTTCCCGTGTTTTTCCCCAACTCATACTGTACCGCGAATGACTTCCTGGTAGGTCACCCATCCTTCTACTACTCCAGCTCAAGCACGCTTAATCCTGAAGTTCTTTCTGGATGGTTAACCGAAAAGGTAAGTGAACTTTTGTGACATAGGTAACCAAATCAATTATTTTATTCTCTCCCACATATGTTTCCATATATCCAGAAATCAAGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00526_LTR-Cassandra_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

44759  

End:

45117

Strand:

-

>Contig00526_LTR-Cassandra_31

TATAGCGCCCCAACCACCCTTACCGGTGAGTCAGCTATCCCTCTGTCGGTCTCGTTGACCCCATCCCCGTCCGACGGTCGGTGCGTTAATCGGGAGGCTCGAAAGTCATGATATACTGACCCTGCAATCACCACATGACCGTTTCCCATGTTTTTTCCTAACTCACACGGTACCGCGAATGACTTCCCGGAAGGTCACCCATCCTTCCACTACTCCGGTTCAAACACGCTTTACCCTGGAATTCTTTCTGGATAGTTAACCTAACCAAAAAGGTAAGTGCATTTTGGTGACATAGATAGCCAAATAAATTCTTTTATTCTCTCTCACATACCATATATACCATAAATCGGGATATTACA

Isatis indigotica (v1.0)

ID:

Contig00526_LTR-Cassandra_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

49316  

End:

49674

Strand:

-

>Contig00526_LTR-Cassandra_32

TATAACGCCCCGACCGCCCCTACCGGTGAGTCACCCATCCCTCAGTCGGGCTCGTGGGCTCCACCTCTATCCGACTGTCGCTGCGTTAACGGGAATGCTCGAAAGTCATGGTATATTGTCCCTGCAATCAGCACATAACCGTTCCCCATGTTTTTTTCTAACTCACACGATACCGCGAATCACTTCCCAGTAGGTCCCCCATCCTTTGACTACTTCACCTCAAGCAAGCTTAACTCTAGAGTTCTCTCTGGATGTGCAACCGAAAAGGTAAGTGCACGTTGGTGACATAGGTAGCCAAATCAATTCTTTTAAGCTCTCCCACATATGTTTCCATATATACTAGGAATCGGGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00526_LTR-Cassandra_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

318

Start:

49779  

End:

50096

Strand:

-

>Contig00526_LTR-Cassandra_33

TATAAAGCCCCAACCGCCCCTACCGATAATTCACCCATCCCTCAGTCGGAGTTGTGGGCCCCACCTGTCTCCGACGGTTGGTGCGTTAACTGGAAGGCTCGAAAGTCAAGGTATACTGTCCCTGCAATCACTTAATGACCGTTCCCTGCTTTTTTTTACTAACTCACACGATACCGCAAATCACTTCCCGGTAGGTCACCCATCCTTTGACTACTTCAGCTCAAGCACGCTTAACTCTGGAGTTCTCTCTGGAAGTGCAACCGAAAAGGTAAGTGCACTTTGGTGACATAGGTAGTCAAATTAATTCTTAACCTCTCC

Isatis indigotica (v1.0)

ID:

Contig00547_LTR-Cassandra_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

356

Start:

10637  

End:

10992

Strand:

-

>Contig00547_LTR-Cassandra_34

TATAAAGCCCCAACGCCCCTACCGGTGAGTCACTCATCCCTCTATCGGGTTCGTGGATCTCACCCCTGTCCGACGGTCGGAACGTTATCAAGGAACCTCGAAAGTCATGATATATTATCCCTGCAATCACCACATGACCGTTTCCCGTGCGTTTTTCCTAACTCACACGATACCGCGAATGACTTCCCGGTAGGTCACTCATCCTTCCACTGCTCCAGCTCAAGCACGCTTAACTCTGGAGCTCTTTCTGGAAGGTTAAGCGAAAATGTAAGTACACTTTGGTGACATAGGTAGCCAAATCAATTATTTTAATCTCTCCCACATATATTTCCATATATACCAGAAATCGAGATGTT

Isatis indigotica (v1.0)

ID:

Contig00553_ERROPOS107991_LTR-Cassandra_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

358

Start:

79532  

End:

79889

Strand:

+

>Contig00553_ERROPOS107991_LTR-Cassandra_35

TGTAACATCCCGATTTCTGGTATATATGGAACATATGTGGGAGAGGTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTAACCATCCCGAAAGAACTCCAGAGTTAAGCGTGTTTGAGCTGGAGTAGTGGAAGGATGGGTGACCTACCGGGAAGTGATTCGCGGTACCGTGTGAGTTAGGAAAAAACACGGGGAACGGTCATGTGGTGATTGCAGGGACAGTATATCATGACTTTCGAGCCTCCCGAATAACGCACCGACCGTCGGACAGGGGTGGGGCCCACGAGCCCGACTGAGGGATGGGTGACTCACCGGTAGGGGCGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00553_ERROPOS107991_LTR-Cassandra_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

79993  

End:

80351

Strand:

+

>Contig00553_ERROPOS107991_LTR-Cassandra_36

TGTAACATCCCGATTTCTGGTATATATGGAAACATATGTGGGAGAGGTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTAACCATCCGGAAAGAACTCCAGAGTTAAGCGTGCTTGAGCTGGAGTAGTGGAAGGATGGGTGACCTACCGGGAAGTGATTCGCGGTACTGTGTGAGTTAGGAAAAAACACGGGGAACGGTCATGTGGTGATTGCAGGGACAGTATATCATGACTTTCGAGCCTCCCGAATAACGCACCGACCGTCGGACAGGGGTGGGGCCCACGAGCCCGACTGAGGGATGGGTGACTCACCGGTAGGGGCGGTTGGGGCGTTATA

Isatis indigotica (v1.0)

ID:

Contig00555_ERROPOS400000+_LTR-Cassandra_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

339

Start:

16387  

End:

16725

Strand:

+

>Contig00555_ERROPOS400000+_LTR-Cassandra_37

TGTAACATCCCGATTTCTGGTATATATGGAAACATATGTATGAGAGTTTAAAAGATTAATTTGGCTACCTATGTCATCAAAGTGCACTTACCTTTTGGTTGCACATCCAGAGAGAACTCTAGAGTTAAGCGTGCTTGGGCTGGAGTAGTCAAAGGATGGGTGACATACCGGGAAGTCATTCTCGGTACCGTGTGAGTTAGGAAAAACATGGGGAACGGTCATGTGGTGATTGCAGGGTCAGTATAGCATGACTTTCGAGCCACCCGTCTAACGCACCGACCGTCAAATAGGGGTGGGCCCAGTGGGCCAAATGAGTGGACATGTGGGCCTAGTGAGAGG

Isatis indigotica (v1.0)

ID:

Contig00555_ERROPOS400000+_LTR-Cassandra_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

16889  

End:

17229

Strand:

+

>Contig00555_ERROPOS400000+_LTR-Cassandra_38

TATAACATCCCGATTTATGGTATATATGGAAATATATGTGTGAAAGGTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAACTCCAGAGTTAAGCGTGCTTGAGCTAGGGTAGTCAAAGGATGGGTGACCTACTGAGAAGTCATTCGCGTACCATGTGAGTTAGGAAAAAACACGGGGAACGGTCATGTGGTGATTGCAGGGTCAGTATATCATGACTTTCGAGACTCCCAGTTAATGCACCGACCGTCGGACACGGGTGGGCGCAGTGGGCCTAATGAGAGGACATGTGGGCCTAGTGAGAGG

Isatis indigotica (v1.0)

ID:

Contig00555_ERROPOS400000+_LTR-Cassandra_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

327

Start:

61413  

End:

61739

Strand:

-

>Contig00555_ERROPOS400000+_LTR-Cassandra_39

GAGCTCCACGCCCTCTCACTTGGCCTGTGGGTCCACCCATGTCTGACGGCTGATGCATTATTTTTTATACGCCCAAGAGGCTTGTTTACTGACCCTTCAATCACCACATGACCGTTCCCCGTGTTTTTACCTCACTCGTACGGTATCTTGAATCACTTCTCGATATGCCACCCATCCTTTGACTACTCTACCTCCAGCACGCTTAACCCAGAGTTCTCTGTGGATGTGTGACCGAAAAGGTAAGTGTACTTTGGTGACATAGGTAGCCAAATCAATTCTCTTAAGCCGTTCCATATACACCTATGTACCAGTAATCAGAATGTTTCA

Isatis indigotica (v1.0)

ID:

Contig00563_LTR-Cassandra_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

337

Start:

77333  

End:

77669

Strand:

+

>Contig00563_LTR-Cassandra_40

TGTAACATCCCGATTTCTGGTAGATATGGAAACATATGTGGGAGAGGTTAAAAGAATTGATTTGGCTACCTAAGTCACCAAAGTGCACTTACCTTTTCTGTTGCACATCCAGAGAGAACTCCAGAGTTAAGCGTGCTTGAGCTGGAGTAGTCAAAAGATGGGTGACCTACCGGGAAGTCATTCGCGGTATCGTGTGAGTTAGGAAAAAACACGGGGAACGGGCATGTGGTGATTGCCGGGACAGTATATCATGACTTTCGAGCCTCCCGGTTAATGCACCGACCGTCGGACAGGGGTGGGCCCAATGGGCCTAATGAGAGGACATGTGGGCCTAGTG