ID Class Order Superfamily Length Start End Strand View
Contig00827_LTR-Cassandra_81 RetrotransposonsLTRLTR-Cassandra831457414656-
Contig00827_LTR-Cassandra_82 RetrotransposonsLTRLTR-Cassandra3421476515106+
Contig00827_LTR-Cassandra_83 RetrotransposonsLTRLTR-Cassandra1011517615276-
Contig00840_LTR-Cassandra_84 RetrotransposonsLTRLTR-Cassandra3284617946506-
Contig00840_LTR-Cassandra_85 RetrotransposonsLTRLTR-Cassandra3424671047051-
Contig00871_LTR-Cassandra_86 RetrotransposonsLTRLTR-Cassandra36418452208+
Contig00871_LTR-Cassandra_87 RetrotransposonsLTRLTR-Cassandra27923392617+
Contig00885_LTR-Cassandra_88 RetrotransposonsLTRLTR-Cassandra3542490625259-
Contig00890_LTR-Cassandra_89 RetrotransposonsLTRLTR-Cassandra11687788893-
Contig00890_LTR-Cassandra_90 RetrotransposonsLTRLTR-Cassandra1012224022340-
Contig00890_LTR-Cassandra_91 RetrotransposonsLTRLTR-Cassandra1214835248472-
Contig00919_LTR-Cassandra_92 RetrotransposonsLTRLTR-Cassandra3424512245463+
Contig00919_LTR-Cassandra_93 RetrotransposonsLTRLTR-Cassandra3284566745994+
Contig00927_LTR-Cassandra_94 RetrotransposonsLTRLTR-Cassandra332549880-
Contig00927_LTR-Cassandra_95 RetrotransposonsLTRLTR-Cassandra106889994-
Contig00927_LTR-Cassandra_96 RetrotransposonsLTRLTR-Cassandra3459951339-
Contig00938_LTR-Cassandra_97 RetrotransposonsLTRLTR-Cassandra119111229-
Contig00940_LTR-Cassandra_98 RetrotransposonsLTRLTR-Cassandra2222010920330+
Contig00940_LTR-Cassandra_99 RetrotransposonsLTRLTR-Cassandra2214250642726+
Contig00943_LTR-Cassandra_100 RetrotransposonsLTRLTR-Cassandra3365043150766-

< 5 6 7 8 9 > Total 49


Isatis indigotica (v1.0)

ID:

Contig00827_LTR-Cassandra_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

83

Start:

14574  

End:

14656

Strand:

-

>Contig00827_LTR-Cassandra_81

AACGCTCCCGACCGTCCCTACCGGTGAGTCACCCATCCCTCTATCGGGTTCGGGGGCCCCACCCATGTCCGACGGTCGGGGCG

Isatis indigotica (v1.0)

ID:

Contig00827_LTR-Cassandra_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

342

Start:

14765  

End:

15106

Strand:

+

>Contig00827_LTR-Cassandra_82

TGTAACATCTCGATTTCAGGTATATATGGAAATATGTGTGGGAGAGATTAAAAGAATTGATTTGGCTACCTATGTCACAAAAGTGCACTTACCTTTTCGATTGCACATCCGGAGAGAACTCCAGAGTTAAGCGTGCTTGAGCTGGAATAATCAAAAGATGTGTGACCTACCGAGAAATCATTTGCGGTACCGTGTGAGTTAGAAAAAACACGGAGAACGGTCATGTGGTGATTGCATGGACAGTATATCATGACTTTCGAGCCTCCCGGCTAAAGCACCAACCGTCGGACAGGGGTGGACCCAATGGGTCTAATGAGAGGACATGTGGGCCTAGTGAGAGGC

Isatis indigotica (v1.0)

ID:

Contig00827_LTR-Cassandra_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

101

Start:

15176  

End:

15276

Strand:

-

>Contig00827_LTR-Cassandra_83

ACCGAAAAGATAAGTGCACTTTGGAGACATAGGTAACCAAATCAATTCTTTTAACCTCTCCCACATATGTTTCCATATATACCAGAAATCGGGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00840_LTR-Cassandra_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

46179  

End:

46506

Strand:

-

>Contig00840_LTR-Cassandra_84

GGCCCACATGTCCTTTCATTAGGCCCAATGGGTCCACCCCTGTCCGACGGTCGGTGCGTTACCCGGGAGGCTCGAAAGTCATGATATATTGTCCCTGCAATCACCACATGACCGTTCCTCGTGTTTTTTTCCTAACTCACACGGTACCGCGAATAACTTCCCTGTAGGTCACCCATCATTTGACTACTCCAGCCCAAGCACGCTTAATTCTGGAGTTCTCTCTCGATGTGCAACCGAAAAGGTAAGTGCACTTTGATGACATAGGTAGCCAAATCAATTCATTTCTCCCACATATGTTTACATATATACCAGAAATTGGGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00840_LTR-Cassandra_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

342

Start:

46710  

End:

47051

Strand:

-

>Contig00840_LTR-Cassandra_85

GCCTCTCATTAGGCTCACATGTCCTCTCATTAGGCCCATTGGGCCCAACCCTGTCTGACGGTCGGTGCGTTATCCGGGAGGCTCGAAAGTCATAATATACTGTCCCTGCAATCACCACATGATCGTTCTCCGTGTTTTTTCTAACTCACACGGTACCGCGAACGACTTCCCGGTAGGTCACCTATCTTTTGACTACTCCAGCTCAAGCACGCTTAACTCTGGAATTCTCTCTGGATGTGCAACCGAAAAGGTAAGTGCACTTTGATGAGATAGGTAGCCAAGTCAATTCATTTAACCTCTCCCACATATGTTTCCATATATACCAGAAATCGGGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00871_LTR-Cassandra_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

364

Start:

1845  

End:

2208

Strand:

+

>Contig00871_LTR-Cassandra_86

TGTAACATCCCGATTTCTGGTATATAGTAGTGTATGTGGCAAGCTTTAAGAGAATTGATTTGGCTACCTATGTTACCAAAGTACACTTACACTTTTGGTCACACATCCGGAAATAACTCCAGAGTTAAACGTGTTTGAGCTGGAGTAGTCAAAGGATGAGTGATCTATCAGGAAGTCATTTGCGGTGTCGTGTGAGTGAGGACAAAACACAGAAAACGGTCATGTATGGTGATTGCAGGGTAAGTAAACAACTCTCTCGAGCCTTTCTAAAATAACGCACCAACCATCCAACAAGGGTGGACCGAACCATGGGTCTAATGATAGGACATGAGATCTCACTGGTAGGGGTAGTTGAGGCATTACA

Isatis indigotica (v1.0)

ID:

Contig00871_LTR-Cassandra_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

279

Start:

2339  

End:

2617

Strand:

+

>Contig00871_LTR-Cassandra_87

ATATAGTGGTGTATGTGAAAAGATTTAAAAGAATCAATTTGGCTACCTATATCACCAAAATGCACTAACCGTTTCGTTCACACATCCGGAAAAAACTCCAATGTTAAGTGTGTTTAAGTTAGAGTATTTAAATGATGAGTGATCTATCGAGAAGACATTCACGGTATTGTGTGAGTGAGGATAAAACACTTGAAACGGTCATGGTAATTATAGGGTTTGTAAACAACTCTCTTAACCTTCTAAAATAACGTACCGAGAGTTGGACTCGGATGGGGTCAT

Isatis indigotica (v1.0)

ID:

Contig00885_LTR-Cassandra_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

354

Start:

24906  

End:

25259

Strand:

-

>Contig00885_LTR-Cassandra_88

TATAACACCCCAGCTACCTGTGCTACTGGGCCTCTACGTTGTCCCTTGGGCCCATGGGTCCAATCCTATCCGACGACCAGAGCATTATTTTTTAAGTCTCAAGAGACTTCTTTACTAACACTACAATTACCATATGACTGTTCTCCGTATTTTGTCCTCATTTACAAGGTATTGAAAATAACTTTCCGCTGATAGGTCACATATCATTTGACTAGTCCAACTTAAGCACGCTTAATCCTAGATTCTCTTTTGATGTATGACAGAAAAGGTAAATGCACTTAAGTGGCATTGATGAACAAATCAATTCTCAAACCTCTCCACATACACTACTATATATTAAAAATCAGGATGTTA

Isatis indigotica (v1.0)

ID:

Contig00890_LTR-Cassandra_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

116

Start:

8778  

End:

8893

Strand:

-

>Contig00890_LTR-Cassandra_89

TTTTTTTTGGATGTGTAACCAAAAAGGTAAATACATTTTAGTGATATAAATAGGCAAATCAATTATTTTATACCTCTCCACATACACCATAATATATTAGAAATCTAGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00890_LTR-Cassandra_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

101

Start:

22240  

End:

22340

Strand:

-

>Contig00890_LTR-Cassandra_90

TAACCAAAAAGGTAAATACATTTTAATGATATAGATAGTCAAATCAATTATTTTATACCTCTCCACATACACCATAATATATTAGAAATCTAGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00890_LTR-Cassandra_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

121

Start:

48352  

End:

48472

Strand:

-

>Contig00890_LTR-Cassandra_91

TGAAATTTTTTCCAGATGTGTAACCGAAAAAGTAAATACATTTTAGTGATATAGATAGTCAAATCAATTATTTTATACCTCTCCACGTACACCATAATATATTAGAAATCTAGCTGTTACA

Isatis indigotica (v1.0)

ID:

Contig00919_LTR-Cassandra_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

342

Start:

45122  

End:

45463

Strand:

+

>Contig00919_LTR-Cassandra_92

TGTAACATCCCGATTTCTGGTATATATGGAAACATATGTGGGAGAGGTTAAATGAATTGACTTGGCTACCTATCTCATCAAAGTGCACTTACCTTTTCGGTTGCACATCCAGAGAGAATTCCAGAGTTAAGCGTGCTTGAGCTGGAGTAGTCAAAAGATAGGTGACCTACCGGGAAGTCGTTCGCGGTACCGTGTGAGTTAGAAAAAACACGGAGAACGATCATGTGGTGATTGCAGGGACAGTATATTATGACTTTCGAGCCTCCCGGATAACGCACCGACCGTCAGACAGGGTTGGGCCCAATGGGCCTAATGAGAGGACATGTGAGCCTAATGAGAGGC

Isatis indigotica (v1.0)

ID:

Contig00919_LTR-Cassandra_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

45667  

End:

45994

Strand:

+

>Contig00919_LTR-Cassandra_93

TGTAACATCCCAATTTCTGGTATATATGTAAACATATGTGGGAGAAATGAATTGATTTGGCTACCTATGTCATCAAAGTGCACTTACCTTTTCGGTTGCACATCGAGAGAGAACTCCAGAATTAAGCGTGCTTGGGCTGGAGTAGTCAAATGATGGGTGACCTACAGGGAAGTTATTCGCGGTACCGTGTGAGTTAGGAAAAAAACACGAGGAACGGTCATGTGGTGATTGCAGGGACAATATATCATGACTTTCGAGCCTCCCGGGTAACGCACCGACCGTCGGACAGGGGTGGACCCATTGGGCCTAATGAAAGGACATGTGGGCC

Isatis indigotica (v1.0)

ID:

Contig00927_LTR-Cassandra_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

332

Start:

549  

End:

880

Strand:

-

>Contig00927_LTR-Cassandra_94

TGGGCTGCCATTATCCATTTTCGGTATACAGATCCATTTTTGTTCGACGGTCGGTGCTATTTCTTAAGTATCAAAATACTTATTTACTGACTATATAATCACCACATGACTTTACTCTGTATTTTGTAGTCACTCACACAATACCAGAAATTACTTTTCCGTAAGTCACTAATTATGAGACATATATTCCATTTACAAACACACTTAAATATAGAGTTTTTTTAGGATATGTAATGGAAGAGATAAATGCATTTTGGTGAAGTAAGTAGTCAAATCAGTTTTCTTAAATATCTCTATCTACACAACCATATATGAGAAATCGAGATGTTACA

Isatis indigotica (v1.0)

ID:

Contig00927_LTR-Cassandra_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

106

Start:

889  

End:

994

Strand:

-

>Contig00927_LTR-Cassandra_95

CACTCAAAGAACACAGCTACTCATTGCGGGCTAGTATTGTCACCTCAGATGGCGTAAGCTCTGATGACTCCACACTCATATATATGGATTTGGATCTGATACCACT

Isatis indigotica (v1.0)

ID:

Contig00927_LTR-Cassandra_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

345

Start:

995  

End:

1339

Strand:

-

>Contig00927_LTR-Cassandra_96

TGTAATATTTTGACCGCCACCATCTGTGGGTTCCATACCCATTCTTGGCTCGTGAGTCCACCCTCGTTTGATGGTCGGTGCAATATTTTTGAGAGGTTTAATTTTTTTTTTTGATAATTGCATTATCGTCACCATATCAGCATATGATATTTTCCTGTGTTTTATCCTTGCTTACACGTATCGAAAAATCACTTTCCAATAAATCATCTATTTTAAAATATTCTCACCTTACGTATATTTAACTATAAAGTTTTTTTTCAGAATATGCATATAAAAGGAATTTTAGTTTAGCGATATAAATAGCCAAATTAATTGTTTTATGTTTTTATACATAAACTATCGTAT

Isatis indigotica (v1.0)

ID:

Contig00938_LTR-Cassandra_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

119

Start:

111  

End:

229

Strand:

-

>Contig00938_LTR-Cassandra_97

CAGGAGGCCACTTCTATCAGGATGTCTCTCATGTTATTTTTGGAAGACTCGAAAGACTTGTTTACTGACCATGCAATCACCATGTGACCATTTCTCGTATTTTTGTCTTCACTCACACG

Isatis indigotica (v1.0)

ID:

Contig00940_LTR-Cassandra_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

222

Start:

20109  

End:

20330

Strand:

+

>Contig00940_LTR-Cassandra_98

GAGAGATTTCTAGAGTTAAACGTGCTAAACTTTTAGCAATATAAGGATGGAATACAAATGTAAAAGTGATTTCTGGTACTGTATAAATGAGATAAAAAAAAGTTGTAGGAAAAGATCATGTGGGTGAATGAAGGTTCGGTAAACAAGTTTTCCGTGTCTCCAAGAATAGCGCACTCGCAATCATGCAAAATAGGCTCCACATGCAGAGAGAGAATAGGGGGC

Isatis indigotica (v1.0)

ID:

Contig00940_LTR-Cassandra_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

221

Start:

42506  

End:

42726

Strand:

+

>Contig00940_LTR-Cassandra_99

GAGAGATTTCTAGAGTTAAACGTGCTTAACTTTTAGCAATATAAGGATGGAATACAAATGTAAAAGTGATTTCTGGTACTGTATAAATGAGATAAAAAAAGTTGTAGGAAAAGATCATGTGGGTGAATGAAGGTTCAGTAAACAAGTTTTCCGAGTCTCCAAGAATAGCGCACTCGCAATCATGCAAAATAGGCTCCACATGCAGAGAGAGAATAGGGGGC

Isatis indigotica (v1.0)

ID:

Contig00943_LTR-Cassandra_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

336

Start:

50431  

End:

50766

Strand:

-

>Contig00943_LTR-Cassandra_100

CCGTCTTTATCGGTGAGTCACCAATCTCTTTATCGAATTCGTGGGCCCCACCTATATCCGACAGTTGGTGCGTTAACTGGGAGACTCAAAAGTCATTATATATTGTCTCTGCAATCACCACATGACCGTTCTCCGTGTTTTGGCCTCACTAACACGGTACTGCGAATGAGTTTCTGATAGGTCATCCATCCTTACACTACTCCAGCTCAAAGATGTTTAACCCTGTAATTTTTTTCTGGATGGTTAACCGAAAAGGTAAGTGCACTTTGGTGAAATAGATAGTAAAATCAATTCTTTTAACTTCTCTCACATATGTTTCCAGAAATCAGGATGGTA