ID Class Order Superfamily Length Start End Strand View
Scaffold10291_LTR-Copia_21 RetrotransposonsLTRLTR-Copia35030743423+
Scaffold10293_LTR-Copia_22 RetrotransposonsLTRLTR-Copia9851985+
Scaffold10303_LTR-Copia_23 RetrotransposonsLTRLTR-Copia1963024430439+
Scaffold10335_LTR-Copia_24 RetrotransposonsLTRLTR-Copia1319271345+
Scaffold10335_LTR-Copia_25 RetrotransposonsLTRLTR-Copia349014054894+
Scaffold10335_LTR-Copia_26 RetrotransposonsLTRLTR-Copia13049045033+
Scaffold1036_LTR-Copia_27 RetrotransposonsLTRLTR-Copia107151649151755+
Scaffold10421_LTR-Copia_28 RetrotransposonsLTRLTR-Copia4772967230148-
Scaffold10495_LTR-Copia_29 RetrotransposonsLTRLTR-Copia17216761847+
Scaffold10504_LTR-Copia_30 RetrotransposonsLTRLTR-Copia63011251754+
Scaffold10504_LTR-Copia_31 RetrotransposonsLTRLTR-Copia15156255775-
Scaffold10504_LTR-Copia_32 RetrotransposonsLTRLTR-Copia128857787065-
Scaffold10514_LTR-Copia_33 RetrotransposonsLTRLTR-Copia377913779-
Scaffold10519_LTR-Copia_34 RetrotransposonsLTRLTR-Copia1711167711847-
Scaffold10519_LTR-Copia_35 RetrotransposonsLTRLTR-Copia44901185216341-
Scaffold10519_LTR-Copia_36 RetrotransposonsLTRLTR-Copia1811632916509-
Scaffold10519_LTR-Copia_37 RetrotransposonsLTRLTR-Copia3992003320431+
Scaffold10519_LTR-Copia_38 RetrotransposonsLTRLTR-Copia1622044520606+
Scaffold1060_LTR-Copia_39 RetrotransposonsLTRLTR-Copia21936583876-
Scaffold10656_LTR-Copia_40 RetrotransposonsLTRLTR-Copia125861263+

< 2 3 4 5 6 > Total 58


Capsella grandiflora (v1.1)

ID:

Scaffold10291_LTR-Copia_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

350

Start:

3074  

End:

3423

Strand:

+

>Scaffold10291_LTR-Copia_21

AAGACAATGATGATTGTGTCGCTGAGATAAAAGGAGGTTATATCAAGAGTGATAGGACAAAAAATCTTCTTCTGAGATTTTCTCCTATACTCAAGAACTTAAAGAAAAGAAGGAAGTTGAAATCCAAAACATTCGTTTAAGCGACAATGTTGCAGAACTTCTTACAAAGTCACTTCCCTCCACGACATTTAAGAAGTATATTCAAAGTATCGGAAAGCATCGTGTACGAGACGTTTGAAGAAAGAAGATATATCTTTTCCAGGGGGAGCGTTACTGCACTATCTTTCCCTTAACATGGTTTTTACCCCGAACGGGTTTTTCCATGATAAGATTTTTAACGAGGCAGTATA

Capsella grandiflora (v1.1)

ID:

Scaffold10293_LTR-Copia_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

985

Start:

1  

End:

985

Strand:

+

>Scaffold10293_LTR-Copia_22

GTAAGTAGATCTTTAAGACCAAACTCGATTGTAATGGCAATATTAAACGATATAAAGCTAGACTTGTAGCTAAAGGGTTTAATCAAAAAGAAGGTATCGACTATAATGAGACTTTTTCTCCCGTGTCAAGGAAAGATTCTCTCAGAATTATCATGgcattagtagctcagtatggtctcaaactacattaaatggatgtgaaaactgcctttcttaatggtgacttagaagAAGAAGTCTATATGCGTCAACCTGAAGGCTTCATAATCGAAGGTCAGGAAGACATGGTCTGCAAGTTAAAGAAATCAATTTATGGACTAAAACAAGCTTTGAGACAATGGTATCTAAAGTTTGATGAAACCattacgaaattCGGTTTTAAAGAAAACATTGTAGATCCATGTATATACCTCAAGATCAGTGGGAGTAAGTTCATAGTTTTGGTTTTGTATGTTGATGATATTTTACTGGCTAGTAGTGATCTTGGTctattacatgagactaagggttatctctctaggAATTTCGAAATGAAAGATATGGGTGAGGCATCCTACGTGATCGGTACTGAAATATTTCGTGATAGATCCCTTGGAGTTTTAGGGTTGTCTTAGAAAGCTTATATTGATAAAATTCTTGAGAGATTTGGCATGATGGCATGTTCTCATAGTATTGTTCCTCTGCATAAAGGTGACAAATTTATTCTTAAGCAATGTCCGCAGAATGAATTGGAACGTCTAGAAATGCAAAAATATCCTTATGCATCTTTGGTGGGAAGTTTGATGTATGCACATGTTTGCACCAGACCTGATATTAGCCATGTAGTTGGCATGCTGGGTAGATTTCAGAGTAACCCAGGACTCGCTCATTGGCAAGCTGCAAAGAAAGTATTAAGATACCTCAAAGGACCAAGAAACTACATGCTTACATACAGAAAATCAACACATCCACAGATGGTTGCATTTTCGGATTCAGATTATGGTGG

Capsella grandiflora (v1.1)

ID:

Scaffold10303_LTR-Copia_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

196

Start:

30244  

End:

30439

Strand:

+

>Scaffold10303_LTR-Copia_23

CCAATTTTTTTAATTGATAAGTTTAATCTCTTTTACTTGCATTTTTATTTACAAAACTGAAAACCAAACAACAAATATTTTCCGCTTTAGCTAAGAACGAGTCTCGCAAGTATTTAGTATAACCTTGCTCCTTGTGATCGATCCCGCATATACTTTACTTTCGGTTAAGTTATCGGATTAAATACTCGAGTAATCA

Capsella grandiflora (v1.1)

ID:

Scaffold10335_LTR-Copia_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1319

Start:

27  

End:

1345

Strand:

+

>Scaffold10335_LTR-Copia_24

TGGTATCAGAGCATTTCATCTTCGTCATCATGCTTCATTCATCTTCTTCCGCAAGCTCGTTTTCTTCGAATCTCTGATTGTTTCTTCTGATTTCTTCATATTCTTCTTCTCTGTTTCATTCTCTTCATTTTCATAGCTCAATTTCTCAAATCGGTTTTGTTTTACTTCCGATCGTGTTTCCTTCCGATCGCGTTTCTTCGATTTTATTTCAATCCGGTCCAAATTTGTCTTCGCGATGTCGAATCCATCAAATCCACCGAATCCGCCGTCTCACAGTTCCGATCCATATGAAAATCCGTTATATCTTCATGCTGCTGACAATTCCGGTGTGAATCTGGTGCTTGATAAGCTCACCGGTGAATCCAACTATCATACATGGCGTCGCTCGATCGTTCAAGCTCTAAATGCGAAAAACAAGCTTGGATTCATCTATGGCACCACTGTCAAACCTGCTCCGGCGCATACTGATTACGGATCGTGGACTCGTTGTAATGACATGGTATGTACTTGGATTACGAACTCTGTCTCGAAGGAAATTGGATCTGGTACAGTCTACTTTGATGATGCTCGTTTGCTGTGGTTGAATCTAGAAGGGAGATTTAAACAAAGTAATTTGTCCAAGATCTATAGTGTTCAGGATCAGTTGGATCGTTTACATCAAGGTTCTTTAGATCTAAGTGCTTACTACACTAAACTCACAACTCTATGGGAAGAGCTGAAGAATTTTGAGGAATTGCCTTCCTGTACGTGTGGTAATTGTACTTGTGGTTGTAACGATCGATGGATCCAGCTCTATGAGAAACGCAACATTGTTAGATTCTTGATGCGTTTAAATGAATCATTCACTCAAGCTCGTAGACAGATTATTATGATGGAACCACTTCCAGAGTTCACCAAGATTTACAACTTCATTGCTCAAGATGAACAACAAAGAGGTTTTAATTGTTCAATGCCTGCACCTGAACCTGTTCCAGAATCTGCAGTGTTTCAAGCTTCCATGAATTATCAGAAAAACAAGGGATATCAACAGGGGCGTCCTCGTCCTCTGTGTACTCATTGTGGGATGCTTGGTCACACTGTCACACGTTGTTATAAGCTCCATGGATATCCTCCAGGTTACAAAGTGCCATCTACTACATGTTACAATGCAGACAAGTCTAAAGGGCAATATAATCCACAGAATGGTGTTCACATGGTGTATTCTCAACCTCAAGAACAGATGTCCCATCAACAATCTTCAGATTACTATCCACAGGCTCAGTTACAAATGCCAGATAATCATCTCATCTCTTACAATGGCATTCCCTATGCACCTGTTG

Capsella grandiflora (v1.1)

ID:

Scaffold10335_LTR-Copia_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

3490

Start:

1405  

End:

4894

Strand:

+

>Scaffold10335_LTR-Copia_25

TCTGTTGGAAACAATACTGGTGAATCTTCACAAGTCAATCATTCAGTCAATATGGTGAATTCTGGAAGGAACTTTTATGTGGGAAGTAACTCCAACAGTGGAGAACAGGTTAATCAGTTAGTTACTCAGTTGAACAGACAGCTTCAAGGTTCTCCGTATCAAGTCATACGTCCACCACCTGCCTCTCAACATCATGGTTCTATTTCAGCTCAAGGTACACAATCTGTGCCTTCTCACTATATTTCTGCTTTCGAACCAGGCCTTATTATTTCACCAAATGTCTGGATTCTTGATACTGGAGCTAGTTGTCATATTTGCAGTGATCTGCGTATGTTCTCTAATGTCTACCGAGTTGATCATGTCACAATAACACTCCCAAACAAAAACACAATTCCTATTCACACAGCTGGAACAGTTAAACTTAGTGATAGTCTCATACTTCATCATGTTTTCTATGTTCCTTCTTTTGCTTTTAATCTCATTAGTGTTAGTTCTTTGACAAAAACAAACAAAAACTTATCTGTGCATTTCTATCATGATGCTTGTTTTATTCAGGATCATACTCAGGCATGGATGATTGGTAAAGGGGATCAGTCAAATGATCTTTATCTCTTAAACCAACAGGACCTCCCTGATACACATCATGTTGCTTTTGTTGCTATTTCTCCTGAGCTTTGGCATCAGCGTTTAGGACATCCTTCTATTTCTAGAGTCCAAACAATGTCTTTCAATTTAAATCTTCCTCTGAAAATTTCAGATTTCCATTGTAAGATTTGTCATTTGTCAAAACAAAAACGTTTACCTTTTCCTTCAAATATTAATAAAAAGATTTCTGAGGAACCTTTCTCTTTGATTCATATTGATGTTTGGGGTCCTTTTCATATTACTTCTGTTCAAGGTTTTAGATATTTTCTTACAATTGTTGATGATTGCACTCGTATGACTTGGATTTATTTTTTGCGTTTAAAGAGTGATGTTTCTAAGGTGTTTTCAGAATTTATAAGTCTTGTTAAAAATCAATATGGTTTCAAAATCAAAAGCATACGATCTGATAATGCACCTGAATTGCAATTTACAGAATTACTTAGAAAACTTGGTATTTTTCACTATCATTCTTGTGCTTATACCCCCCAACAAAACTCAGTAGTGGAAAGAAAACATCAACATCTATTGAATGTGGCTAGATCTTTATATTTTCAATCTAATGTACCTCTTGCATACTGGCCTGAATGTGTTTCTACTGCTGCATTTTTGATTAATAGAACCCCATCCCCTGTTTTACAAGATAAAAGTCCTTTTGAAGTACTATATAAGAAAATTCCAGATTATTCTTTTCTTAGGGTCTTTGGTTGTCTTTGTTATGCATCTACACAACAACATGATAGGCATAAATTTACTGAGAGAGCTAGGCAATGTGTCTTCCTTGGTTATGAATCAGGTTTTAAAGGATATAAGGTTTTAGATATTGAATCTAATGTTACTTCTATTTTTCGTAATGTTGTCTTTCATGAAAATATATTCCCATTCTTTAAAAATTCAGTTAGTCCTACTTTGCCTTTCTTTGATGATTCTATGGTTCCTGTTTTACAAAATCAAAACTCACAGAATTTTCAAATTTATGATGATCTTAATGCTGAAAATAGTGAAGTTGGTCCTATCACTGAGGTAGACACTGTTCTAGATCACACACACACACCACCAAATACAGAAACTAGAACTGATCATACTCGGGATGACATGGGAAACACACTCAGACCACGCAGAGAGACACGAGCTCCAAGTTATCTAAAACAGTACCATTGCTCTAACATCACCACAGAGCCTTCTTCCTCTTCTTCTTTTCATGGTACTGCTCATCCTCTCTCTGCTTATTTGTCCTACGATAAACTCTCTCCTGAGTATCGTCTGTTCTGTTTTGCCATTATTTCTGAAAAAGAACCAAACACTTTCAAAGAGGCAGTGTTGTTGCAACATTGGCTTGATGCGATGAACATGGAATTGGATGCTCTTGTGAGTACATCTACCTGGATAATCTGTTCTTTACCTGAAGGAAAACATGCCATTGGCTGTAAATGGGTGTATAAGATCAAATATAAGTCTGATGGATCAATAGAAAGGTATAAGGCTCGTCTAGTGGCTAAAGGATACACACAACAAGGAGTTGATTACTTGGACACCTTTAGCCCTGTAGCCAAGCTAACAACAGTTAGGTTGCTGTTTGCTTTATCTGCAATTCACAACTGGAGCATCAACCAAATGGATGTGACAAATGCCTTTCTACATGGAGACTTAGAAGAAGAGATATATATGTCATTACCACAGGGATACACTCCAAGACATGGGGAGTCTTTACCTGAGAAACCAGTTTGCAGACTCATTAAATCTCTATATGGGTTAAAGCAAGCTTCTCGTCAATGGTTTCACAAGTTCTCAACTGTTTTGCTTCAAAATGGTTTCATTCAATCACCATTTGATCCAACACTATTTGTGAAATCAGATACTGACGGTTTTCTTGCTCTGCTGGTTTATGTGGATGACATAATGTTAGTGAGTAACAGGGATTCTGCAGTTGCCAAGACAAAAGATTTTCTTGCTAGAGAATTTAAACTAAAGGATTTGGGCAGGATGAGATATTTTTTGGGCTTGGAGATTGCTAGATCAAAAGAAGGAATCTCTGTTTCTCAACGGAAGTATGCATTGGAACTACTTGAAGAATTTGGTTTTCTTGGTTGCAGACCAGATCCTACGCCAATGGAGTTAGGTTTGAAGCTCAGTGATGAGAGTGGCGAGCTTCTTCCGGATCCTTCTGATTATAGAAGACTTATTGGCAAGCTGGTTTATTTAACAGTCACAAGACCTGACATTTGTTTTGCAGTAAACAAACTCAGTCAATATGTTAAAGCACCAAGAGAGCCTCATTTGATTGCTGCATACAGGATCTTAAGATATTTGAAGAATGATCCAGGTCAGGGAGTCTTTTACTCTACAAAATCGACTCTTACTCTTCGTGCCTTTGCAGATGCTGATTGGGGAAACTGTCCTGAAACAAGTAGATCCATCTCTGGATTCTGTGTCTTTCTTGGTGACTCTTTAATCTCCTGGAAATCCAAGAAACAGGACATTGTTAGTCGCAGTTCTGCAGAAGCCGAGTACAGAAGTATGGCCAATACCACTTGTGAGCTGCTCTGGATCAATTCTCTGCTTGAAGATTTGCATGTTCCTCTTGCTGATACAATTGTGATGTATTGTGACAATCAAGCTGCTCTGCATATTGCTAAGAATTCAGTATTCCACGAGCGCACCAAACATGTTGAAAGAGATTGCCATGTAGTGCGGGAAAGGGTGGCTTCTGGATTCATGAAAGTTCTTCACATTGGCACACAACATCAGCTCGCTGACATGCTTACCAAGCCTCTCACAGCCATTCAATACAATCATCTCTTATCCAAGATGGGATTACATCATCTGTATTCTCCATCTTGAGGGGGAG

Capsella grandiflora (v1.1)

ID:

Scaffold10335_LTR-Copia_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

130

Start:

4904  

End:

5033

Strand:

+

>Scaffold10335_LTR-Copia_26

ATATATATCGGTACACTCGGTTAAGTATTTGATCCGGTTATgtcccggttatattgattgtatttaagcaaacctatggttgtattattcacttaatgaagcgtttatcaaaagttagttacatctgaaa

Capsella grandiflora (v1.1)

ID:

Scaffold1036_LTR-Copia_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

107

Start:

151649  

End:

151755

Strand:

+

>Scaffold1036_LTR-Copia_27

TCCTTCTCATCGTCATCTCCATCAACTTCATCTTCATCATCAGTATCATCATCTGTATCATCATCAGTATCATCATCCGTATCAACATCATCACCATTCTGTCCATC

Capsella grandiflora (v1.1)

ID:

Scaffold10421_LTR-Copia_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

477

Start:

29672  

End:

30148

Strand:

-

>Scaffold10421_LTR-Copia_28

TGATTTCTTGTAGTATGACAATCAACCTTTGTTTTCTTAATTTCTTTCTATGAAAGTTAGGATCAGAAGTAATCAGACGGCTGATTTATGGTCACTATACAATTAATTCATAATGAACTAATTTGAATTTCCAAATCTTTAAGAAGTTGTTGTAACATGAGAAGTTCACATGTATGTACTAAGAGTTAAATTTTTATATTCAATCTAGTTACTAGCAATATGTTGTTTATTTAATTTTAAGAAATAAAAAATGTGTATCAAGATAGAGACAATAACCACTAATAATTTAGAATAAGACAAGTGTTTTAATCCACATCAGCAAAAGCTTTAATACATAATTTTGTATAATCATCATTGAAAATACTATGACCTTGATTATTTTTGAGATACCGTAAAACATGTTGAGCCGTTTGATAGTGTTCATTTGTTGCACATGATAAGAACTAACTCAAACTATTTACAATTCATGTAATATCA

Capsella grandiflora (v1.1)

ID:

Scaffold10495_LTR-Copia_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

172

Start:

1676  

End:

1847

Strand:

+

>Scaffold10495_LTR-Copia_29

TTTGTTGCTTTTATTCGTAAGTCATCGATTCTTTGAAATATCTTGTAGCATAATGCTTTAATACATAATTTTTAAATCAGTTTATTTTTCATTTTAATTTACAAGTCTAAAAACCAAACAAACAACCTTTTTGCTTTAGCTAAGAATGAGTCTCACAAATCTTTAGAGTATC

Capsella grandiflora (v1.1)

ID:

Scaffold10504_LTR-Copia_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

630

Start:

1125  

End:

1754

Strand:

+

>Scaffold10504_LTR-Copia_30

AAATTCAACCGATTCTTCCATTGTTTCCGCACATTCTGAGCTTGATTCTTCGATTTTTCTTCTCAATTGAATCTATTTTATTAGATTTGTATTCTTCACGGTCGTCTCCGCCATGAATCAATTATTTTTTTCCGATGGTGACTACTCGCAAAATGAATTGTTGCATGGTCAGAGCAGTTTCGTCACCTCGTCGATCGGTGAATCGTGATGATTCTTCTCCAGAGGTCTTGCCACCAAATCAACCGATTCATGCGGTTTCGTCAGCTCCTCAAGTTTTCATCCCTTCGATTGAGTCTCCCGATAACATTCATTCTCCGTTCTATCTCACAAACAACGACAATCCATGTATCTCTATCATTTTTGATGTTCTTGATGGTACGAATTACGATGATTGGAGTATCGCGATGAAAATAGCTTTAGATGCGAAAACAAAGTCGCGTTTATTGATAGATCCGTTTCACGACATGTTGAATATGATCGTATGTTTTGGATTTGGTCACGGTTTTAAAGTCTAGTGAAGTCTTGGCTTCTAAACTCAGTATCGAAGCAAATCTATAAAAGTATTCTTCGTTTTGATGATGCATCAGAGATTTGGAAAGATCTGTTGACTCGATTTCAGATCAACAATCT

Capsella grandiflora (v1.1)

ID:

Scaffold10504_LTR-Copia_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

151

Start:

5625  

End:

5775

Strand:

-

>Scaffold10504_LTR-Copia_31

GTATTTCGATGTATTCATCAAGATGATTACAAGAAGTATTTATAGATTGTACAGAGGAACATTCTAGGTTAAACGTATTAAAAGACATATCTACAAAAGAGGAAAGAGTATATTGTGATGATCAAGTGATGATATCTCAATATCTTTAACA

Capsella grandiflora (v1.1)

ID:

Scaffold10504_LTR-Copia_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1288

Start:

5778  

End:

7065

Strand:

-

>Scaffold10504_LTR-Copia_32

CCCCCTCAAGATGGAGGGGATTTGCTTCACTCCAATCTTGTTCCGAAGGTGAAGGAAGTGAGCTCTTGGAAGTGGTTTTGTAAGAGCATCCGCTAGTTGATCTCTTGTTTTGACATGACAGACCCAGAGAAGACCATTCTGAACTTGACCACGAATGAAGTGGTAGTCAATAGCGATGTGTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCGATAATCTGCTTCAGTTGACGATCTCGCAACGCCATTCTGTTTCTTAGCTGACCAAGATATCGGATTCCTACCAAGGTAGACAATGTAAGCGTTCGTCGAGATATAATCATGTGAGTCACCAGCCCAGTCAGCGTCAGAGAATGCATGAAGACTCAATGGATTCTTTGCTGAGAAGAAAACACCATGTGTTGTTGTCCCTGCAAGGTAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGCTTCCTACCAGTTTTCTGTAAGGAGTTGGATCAGTGAGCGGTTGACCAGTCGTGAGAGTGATCTGTGGAGAATGTCGAGGATATACTTTCGCTGAGAGAGGTGCAAGCCATGTGTTGTGCGATGAGCTTCAATCCCCAGAAAATAATTGAGATCCTCAGCATCTTTAACTGAGAACCGAGCAGTGAGGAGAGCAAGGATTTGATTAATGGTGGATGTGTTGCTACCAGTAATGAGGATATCGTCCACATATACCAACAAGTAGACAAAGTCATTGTTGCGGCGAAGAATGAACAGCGACGTGTCCGACAATGAGTTTGTGAAGCCTATGGTGAGAAGGAAATTCTTCAGCTCAGTGTACCAGGCGCGTGGAGCCTGTTTCAAACCATATACAGCTTTGCGGAGTTTGCACACGAACGTCGGGTTGTCCGGATCAACGAACCCTGGTGGTTGTTCCATGTAGACTTCTTCCTTCAGTGTTCCTTGTAAGAAGGCATTATTGACATCGAGTTGTTTGATAGGCCATGCACGAGACACCGCAACATCAAGCCCTAGACGAATTGTCGTGGATTTGATCACGGGGCTAAATGTTTCTGTGTAGTCCCGACCGTGTTCTTGATTGTATCCCTTGGCCACGAGTCTCGTT

Capsella grandiflora (v1.1)

ID:

Scaffold10514_LTR-Copia_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

3779

Start:

1  

End:

3779

Strand:

-

>Scaffold10514_LTR-Copia_33

GGAACATGTATCACTTCTACTTGTTCATTTTCAACGCATTCACGTATAAAATGATACCTTCGATGAATGTGCTTGCTACGTCCATGGAAGACCGGATTTTTGGTGAGTGCGATAGCAGACTTGTTATCAACTTGTATTGTCACCTTCTCACATGTTACTCCAACAATTTCAGCAAAGAGATCTTGGAGCCAAAtagcttgcttcgctgcttctgTGGCAGCCATGAATTCAGCTTCACAAGATGATAAAGCAACAACTTGTTGTTTCTGTGAGCACCAAGTGATAGGACAGTCGTTGAAATAGAATACATGACCTGCTGTACTCCTTCCATCATCGATGTCAACACTGTGACTACTATCACTAAAGCCCACCAGCCCGGATTGCTTACCACGCTTGAAAAACAGACCATGACTAATGGTTCCTCGAAGGTACCTCAGTATTTGCTTCAATGCAACACCATGTGATTCTCTCGGTTCCTGCAAATACCTAGTCAAAATACCGACGGGATAAGAAAGGTCTGGCCTTGTATGCAGTAAGTACCTAAGACAACCAATTCTTCTTCTATATGTTCTTTCATCAATGTGTCTTGGATCACGTCCTTTAGAGAGTTCCAGTCCAGGCTCCATTGGTATGAGGACCGGGTTACAGTCACTTAAACCAGCTTCTTCTAGTATTCTTTTACCATAACTCTCTTGTTTTAACACAATCCCATTATTCTCTTGCAGTACTTCAATTCCGAGGTAGTAAGTAAGCTTCCCTAGATCACTCATCTCAAATTTTCCAGCCATTCCTTTCTTGAAAGCTTGTATCATCTCTAAACTGGAACCAGTCACAAGCAAATCATCAACATAGACCGCCACAATAAGAATATGCTCCTTCTCTTGCTTCTTGTACAAAGACGCTTCTTTAGAACATTTGATGAAACTTAGTTCACCAAGAATCTTGTTTAGCTTAATGTTCCATGCTCTAGGCGCTTGCTTGAGTCCATATAGCGCCTTGTGTAATTTATAAACCTTCTCCTCATTATCTTTAGCAACAAATCCCTCAGGTTGGGTCACATATACATCTTCTTTCAAGTCTCCATGGAGAAACGCTGTTTTGACATCTAAGTGATGAACTTCCCACCCATTTGATGCAGCCAAAGCAATAATCAATCGAATTGTCTCGATACGGGCTACTGGAGCGAACACCTCATCGAAGTCTATACCATGCCTTTGCACATAACCTTTCGCCACAAGCCTAGCTTTATACTTGCTGATGCTATTATCTGAGTTTCTCTTCACTTTAAAGACCCATTTCAACCCGATTGGTTTAACTCCAAGTGGCAGATCGACTAAGCTCCATGTCTTGTTCTTTGTAATCGACATGATCTCTTCATCACATGCTTCTCTCCATACTTTCTGTTTTGTtgcttcttgaaAATCCCATGGTTCATCATTAACTGCTAGCAAGAGTTGTTCTCCTTCAATTTCTGCCAAAAGAACATAATCGCTTAAGTATCCTGGCATCCTTGCTTGTCTTTGTGATTTTCTCAATGGTGGTATATCTTGAGATTGCTCCTCATCCTCCTCATCGTGTTCTTCCTCAACTGCATATTCGTCGTGATGGTCGTGATTATCACCATTGTCATCGTTTCCATCTTCACCTCTGTTTTCCTCTGTTTCGTCAATGATTTCATTTCTCCTAATTCCATTGTTTCCAAATTCAGAGAAGGTGAGCGTGAAGGTTCCTGATTCCATAGACCTGTTCTCTGAATTGTTCCATTTCCAGGATTTGAGTTCTTCAAAGAcgacatctctgctgaccaccactttccggtttgttggatctaagagacgataggctttggaaccgGGTTCCGTTCCAAGATGAACCAGCATCCTTGATCGATCATCCAATTTTCTGAGGTGTGGGGCTTCAGTTTTAGCATAGCATACACAGCCAAATACTCGCAAGTGATCAACCCTTGGTTTCTTCTTCTTGTAAACTTCATATGGGGTTTGATTATCTAAAGATCTCGTCCCAACTCGATTGATGATGTAGCTTGCATGCCTTACCGCTTCTCCCCACAAATAATTTGGCATGTTCATATGCTTTAAAATGCTTCTAGTCATCTCCAGCAATGTCCTATTACGTCTCTCGACAACACCGTTTTGTTGTGGTGTGTAGGGTGCGGTTAAATGCCTATTGATGCCCTCTTGTGCACAAAAATCTTGAAACTCTTGAGAGACAAACTCACCTCCTCTATCGGTCCGGAATGTTTTGATGGTAGCACCAGTTTCTTGCTCGACTAATGCTCTAAATCTTTTAAACTTCTCGAACGCTTCACTCTTCTCTTTCAACAAGATTGACCACATGTAACGAGAGTGATCATCGATCAATACGAAGACGTATCTCTTGTTTGCAGCTGTTGAGGGTGAGATTGGTCCGCACAAATCACCATGTATGAGCTCCAATACTTGTGATGCACGAAAAGACGTTGCTTTTGGAAAAACTTGTCTTGCTTGTTTTCCAAGTAAGCATGATGCACAAGTTTCCTTCTCTTTTGTTATACTTGTTATCCCAATAACTAGCTCTTTGTTCACCATTGTTTTGATGGtgtcaaggctaatatgtcctagccgagcatgccacaagcttgactcgtttgctgtaACTTGGTTTAGACTCTCCATGTTTGCAACTTCCAAGTTTACTTTATACAACCGGTTGAGTGATCGACTTGCTTTCAACAATAGGTTCCCATCTTTATCACATAGAGTGAGATAGTTTTCTCTCATTCTAATATCACAACCAGACTCAGTAGCTTGCCCTAAGCTTATGATATTGCTTCTAAGATCTGGTATGTAGTAGACATCATCAAGTACCTTTCTATCTCCTCCTTTTGTTAAGAACAAAATCGACCCTTTTCCCTTTATATCTATGCGAGAATCATCACCAAACCTTACTTTTCCCGTAACCATCGGATCAATCTTGTGAAACCAAGCATGATTTCCAGTCATGTGATTGCTAGCACCGTTGTCaaggtaccacaCTTTCTCGGAGCATTGTTCAAATTCTTGTGGTTTCACGTTCTTCTCGTTTAGGTACACAATCTCATGAACCATTAGGGACTCTGCTTCACGCGTATCGTCTTCCTCCTTCTCTTGGGTTTCTTGTGCCTTGATTAACTTCAGAAGACGATCGGGACAATCAGACGCATAATGTCCAAGTTTATCGCAACGATAGCATGTAACCTTAGAAGTGTCTCTTTGGTAGTTAGAGCGACCTCGTCCTCTTCCTCGTCCACGATACCAGCCTCGTCCTCTTCCTCCTCTTTGAGTATACTCTTGTGATTGCGAATCATCATTGGCATACATAAGCTTCCCTTGCTCGTCCGGTGACTCATCTTCTTCACGGATTCTCTCCTCATACGCCTTCAATCTCCCAACAATGTCTTCGAAAGTCGTTGTTTTGAGATCGAGTAGTTGTTCAAGCGAGGCAGTCATATGTACGAACTTCTTTCTTGGCAAACTCTTGAGGAACTTCTTAACTATTCTAACCTCATCAATAGTTTCTCCTAACAGGGCTGATTTCGTTGATATCTCTGAGAGCTTTCCCGCAAAGTCGTCAATGGTGTCTGTCTCCCTCATCTTCAACCTATCAAACTCGGTCATGAATGTTTAGATTACCCACTTGCAAAAGCATTGACTCTGGGATCGATTGAAACAAAAGAGCCCTCGCCAAATTGTTTTTCTCGATGTCGTCGGATCCAGGATCAATGGTGTCCCACACCTTAT

Capsella grandiflora (v1.1)

ID:

Scaffold10519_LTR-Copia_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

171

Start:

11677  

End:

11847

Strand:

-

>Scaffold10519_LTR-Copia_34

ATATAAAGGTTCTTGTAGAAGTGATAATCTTATTATTACATAGAGAAGAGTATATATACACCtagagatagctagggtattacaatcatagttaatgagaagatactactatacatatacagagacgtaattgacgtaatcacagatatgaggaTATCTCAATCATATCCT

Capsella grandiflora (v1.1)

ID:

Scaffold10519_LTR-Copia_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

4490

Start:

11852  

End:

16341

Strand:

-

>Scaffold10519_LTR-Copia_35

CGCCCCCTCAAGATGGAGGGGGGCTTTGCTACTCCCATATTGCTTACAAAAGTCTGAAACGTGCTTCGTGGTAGTGGCTTGGTGAGAATATCAGCGAGCTGATCTTTGGTTGAGACATGTACCACACGTAACTCTACCGACTGCACTTGATTACGAATGAAATGATAGTCGAGAGCCACATGCTTCATTCGGGAGTGAAAAACGGGGTTAGCACACAAGTACGTTGCACCCACATTATCACAATAAATAACCGGAACTGCTGGAAGCCGAATACCAAGTTCACCCAATAACGAACATATCCAGGTTATTTCCGACGACGTGTTTGCAACTGACCTGTACTCGGCCTCTGTGGAAGAACGAGAAATGCTTTTCTGTTTCTTTGACGACCATGAGACCGGATGCGTGCCGAGATAAACAATGTAACCATTAGTAGACAAGTAGGTATCACTATCACCCGCCCAATCGGCATCAGAATAAGCATGTAGAGATAACGAACCACCACGGCGAAGAAAGATGCCATGATCAAACGTACCAGCCAAGTATCGGAGAACTCTTTTCACCGCACTCCAGGGATCGACCGTTGGGGCATGCATAAATTGGGAGAGCCGTTTCACCGCATACGACGTGTCAGGTCGTGTGAGCGCTAGATATTGAAGACTCCCTACAACTGCTCTATATTCAGTAGGATCAGAAAGTCTCGTACCCGTGTGAAGAGAGAGCTTTGGTGTGGTGGCCATTGGAGTAGTTACCCGTTTTGCACCTAACATCTTCGTCCTCTCTAAAAGATCAATTATATATTTTCGTTGACAAATGTGCATTCCTGAGGCACTACGCTTAACTTCAATACCCAAAAAATAATGCAAATCTTCATGTTCCTTCACCGAGAAACGCTTGGCTATGGCATCTAACGTGTGTTGTAGTAGCTTATTGTCATTGCCAGTGACTAGTATGTCATCCACATAAACAAGCATGTATACTATGGATTTTCCTGTCTTGAGAATAAAGAGAGAAGTATCAGCCACTGAATTGACAAAACCAAGTGTTAGAAGAAAATTACGCGACTCCATGTACCAAGCCCGAGGTGCTTGTTTGAGACCATATAAAGCTTTCCTCAAGCGACAGACGTGATTCGGACGATCCTTATCAACAAAACCCGGCGGTTGCATCATGTAGACTTCTTCTGTGAGAGTGCCTTGGAGGAAGGCATTGTTTACATCCAATTGACGAATTGGCCATGAAGAATCAACAGCGACTCCAAGAACAACACGAATAGTTGTGGCTTTGATGACAGGACTGAAGGTTTCTTCGTAATCTAAGCCATGTCTCTGATTATACCCCTTTGCAACAAGACGAGCTTTGTAACGATTGACTGAACCATCTGGATTATACTTGGTTGTAAATATCCACCGGCAGCCAATAATTCTAGTGTGTGGAGATGGAGGAGGAACAACATCCCATGTGTGATTGTGAATTTGTGCATTCATCTCAGAACAACAAGCTTGACGCCACCGTTCATCTTTAAGAGCTTGGTTAGCTGTTCGTGGTTCGGACGTGGTAACAGCCATGAGGTACTTGTTGTTTGGTCTGGAAACACCGGTCTTCGCACGAGTAGCCATCGGGTGATGATTATTGGGATTGACATTGATTTGAGGAACAGAACCTGTCGAGCTTGATGAAGACGAAGAAGAAGAATGAGGAACTGGGGATAGTGTTTGGTCACGTGGCTGGGTAGTGGATTGTGTTTGGGTTTCAGTAGAGGGCCTTTGTTCATGGGCCGAGTTTTGTGTTTGCATGGATAAAGTGTTTGATGTGTTTGAGTGGGCTGGTTCTGTTTGTGTTAATAGGCTAGGTTGCTGGGCCGTGGGTGTCAGCCCATTTTCAGTTGGAGCAGTGGGCTCAGAGGAGGGAGAAACAGAATTGGATTGAGAGGAAGAAGAAGACAATACCTGAGACGTGGCTGGAACTGGATTTGGTGGCGATGGAACCGGACTGTTCACGTGGTGAAAGATCGCACTTGGGGGTTCCGATAACGGCAGAGGTAGAGCTAAATGAGGTGACGACGATGCTTCTGTTGCATTGTCCATGGGTGACAACAATACATGTGTTGCAGCAAACGGGAACGACATCTCATCAAATTGAACATGTCGAGAGACATAAATTCGATTCGATGGAATATGCAGACATAAATAAGCACTCTGAGTTAATGAGTATCCTAAGATCACACATCGGAGAGAACGGTCTTGAAGTTTGTGACTGGTATACGGGCGTAACCATGGGAAACAAGTACATCCAAATATGCGTAACTTGGCATAGTTTGGAGACCGTTTAAACAGCTTATGAAACGGAGAGGCCATATTCAACACCGGTGTTGGAAGACGATTAATGAAATACACCGCGACAGCAAACGCATATGGCCAATAGCTTTTCGGTACGGATGCGTGAGAAAGTAGAGTGAGCCCTGTCTCAACAATGTGTATATGCTTGCGTTCGGAGATGCCATTATGTTCTGGAGTATGCAGAGGAGAGGTAAGGTGTGAGATACCATTTGCCACAAAGTAAGCTCTTAATGCCACAAACTCGCCGCCATTATCTGAATAAAAATTGCTGATCCGTGTTTGGAACTTATTTTCGACCAGAGTTTTGAAAGCAACGAAGGTTTCTCTTACTTGGGATTTTTGTTTAAGTGGGTAAAACCATGTATAACGAGTATAATGATCTATAAGAACAAGGTAATATTTGTAATTTTCAGTGGAAAGGATTGGGGAACTCCAAACATCAGAAAATATATACTCAAGAGGCCGAGAAGAAGTAATTGTGGATTGCGAGAAAGGAAGCTTATGGCTTTTATTGATTAAACAGTCATGACAAGACAAGAGTTTTTGTTTAGGGGAGATAACAGGAAGAGAAAAATTTGAAAGAACTGTGTTTAAAATAGAAGAAGAGGGGTGATCCAAACGAGAGTGCCAAGAAGAGAGAGTAGCTTTCAAACTAGGTGAAGCCATCATAGCTTTTATTGGTGGTGGTGTCTTCGGCCACTCATATAGCTCAGCTCTAGTTCTGCCGTGGAGTAACGGAACCCCCGTGTTGAGATCCTTCACCTGAAAGGAAGAGGGGAAAAATTCCACCGAAACTCGATTAGTATTACATAAACTATACACCGAGATCAAGTTATTACGAATATCGGGAACGTATAAAACATTATGTAAGTTTATCTGTCGAGTATTTGTGGAAAAAGAGACAGAACCGGTGTGTGTAATGGGAACGGTGGAACCATCAGCTACAACAACATCATCACCACCATGATAGGGCTGGTAAAGCGACAGATTGTGGAGATCCGAGGTGATATGATGAGTCGCCCCACTGTCCATGAACCATCCGTTTTGTGGATACGGTGAAGCAACGGCCATGTTCGCACGAGGGTTCCATGGTGCAAATGGAGTGGTCTGTGGTGGTGGAGCAGTTTGGTATTGTTGGAGCTGAGCACATCTCCTTGCACTGTGCCCTTGAACCCCACAAATCTGACACTTTCCCAAGTATGGTTTCTGTCCACGTGAATCTGATTTGTTGGAATGCTGCCAAGTGGACTGTGATGAGGAGGACCACGAGGCGTTGTCATTCTTGGACTTGTATTGACTACGCTGGTTTGTGGAATTGGTACGGTGTTGAATCACATTGGCCGTGATTGGGAGAGTCGGTGAGGCCATGACGGCTGCGGCTAGCAACCGGGCTTCATGATTGCGGAGACGTTCGTGTACATCAGTAATGGTTGGAGGAGAGTCTTTCCCTTCAACTTGATCAACAACGGGCTTGTATTCTTCTGGAAGCCCTTCCAAGATGACTTCTATTTGATCTTCATGATCAAGTGGTTTCCCCAAAATTGCAAGCTGGTCCATGCGAGTAGTGAGGCCTTGGACATAGTCATCAACAGATCTATCACCTTTGACCCACTGCTTGAGCTGAGCTTTGAGTTGATTGATGTGACCACGGCTGGGCTTCGCAAAGGTGGAGGCTAAGGTTTCCCAGATCTTCGCCGTGGTGGTAGCACGAGCCACCAAAGGTTGAACAGACGGCGAGATAGCTCCTAACACGGCACTGTAGAGAAGCTGGTCTTGTCGAGTCCAAAAGGTGAAGTCAGGATTGACCTGAACAACATTAGCGACAGTGATTGTGGCTGGAGGAGCAACAGTGGAACCATCGAGGTATCCACGGAGCGCATAACCAGCAAGGAGAGCGTTCACTTGAAGACTCCACATGAGATAATTGGTGGAGTTAAGCTTGGTAACACTTGATGTGTTAACACTGAACAACGTTGGAGTGGTTGTCACAATAGGATCAGCCACGGTGGGAGCAGAACTATTgatggcagagtTTGAGGCCATTGAAAAGAAGAGAGATAAACAAAAAAAGGAGAGAAGCGGAAGCTAGAGAAGAGAGACAGAGAGAAAAAAATAAAATTGCAGGTTTTAGAAACGTTTATTGCTCTGATACCA

Capsella grandiflora (v1.1)

ID:

Scaffold10519_LTR-Copia_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

181

Start:

16329  

End:

16509

Strand:

-

>Scaffold10519_LTR-Copia_36

TGCTCTGATACCATAAAGGTTATTGTAGAAGTGATAATCTTATTATTACATAGAGAAGAGTATATATACACCtagagatagctagggtattacaatcatagttaatgagaagatactactatacatatacagagaCGTAATTGACGTAATCACAGATATGAGAATATCTCAATCATATCCT

Capsella grandiflora (v1.1)

ID:

Scaffold10519_LTR-Copia_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

399

Start:

20033  

End:

20431

Strand:

+

>Scaffold10519_LTR-Copia_37

CTAGATATTGAATCAAAAGTTACTTCTGTTACTCGTAATGTGGTCTTTCATGAAAATATATTTCCATTCATTAAAATTCAGTTACTCCTAGTTTACCTTTCTTTGATGATTCTATGATTCCTGTTTTACAAAATCAAAATAGTCAGAATTTTCAAATATATGATGATTTTAATATTTTCAACAATGAGGTTTGTCCTGTCACTGAGACTGATACTGTTCTAAAGCACACACAAGCACGCACCCAAAATCCATCAAACAATGATACTATAACTGATCAATCTCGGAGACTCGGACTGACATGGAAAACATGCCTAGACCACGCAGAGAGACACGTGCTCCTAGTTATCTTCAACAGTACCATTGCTCTATTGTTACAACAGAGCCTTCTTCTTCTTCTTC

Capsella grandiflora (v1.1)

ID:

Scaffold10519_LTR-Copia_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

162

Start:

20445  

End:

20606

Strand:

+

>Scaffold10519_LTR-Copia_38

GATATTGTCACATGGTTCGTGAAAGCGTAGCTTCTGGATTCATGAAGGTTCTTCACAttggtacacaACATCAACTTGCAGACCTGTTAACTAAGCCAGTACTTACAGCTATTCACTTATTATCCAAGATGGGATTACATCACTTGTACTCTCCATCTTGAG

Capsella grandiflora (v1.1)

ID:

Scaffold1060_LTR-Copia_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

219

Start:

3658  

End:

3876

Strand:

-

>Scaffold1060_LTR-Copia_39

TGCTCCTAAACCAAGCCTGAACACGTTTCCAGTTGTTGATCGACGCGTGTCGTGATCACCAGCATAGTCGGCGTCACAATAGCCAACTATCTTACACTGTTCTCCTTTCTTATACAGAAGACCATAGTCAAGTCTTCCTTTCATGTACCTCAATATTCGTCGAAAGTGAGGTTTCTTTGGATTTTGCATGAATCGACTAACCACTCCAACTGCATATGC

Capsella grandiflora (v1.1)

ID:

Scaffold10656_LTR-Copia_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1258

Start:

6  

End:

1263

Strand:

+

>Scaffold10656_LTR-Copia_40

AATGTAGTCGGGTGTAAGTGGTTGTACAAGAACAAGTTCAACTCCAATGGATCACACCAACGGTGCAAAGCGCGTCTCGTAGCTAAAGGCTACAATCAACAGTTGGGTCGCGATTACACAGCCACATTCAGCCCTGTTATCAAATCGACAACAATCCGCATTGTTCTTGACATCGCCGTGTCTAAAGGCTGGCCCATTCAGCAGCTAGATGTCAACAATGCATTCCTCCAGGGAACTCTAAAGGACGAAGTGTACATGGAGCAACCCCCGGGTTTTGTTGACTCTGACAAGCCAGACTTTGTCTGCCGTCTCAACAAGGCGGTTTATGGTCTCAAGCAAGCTCCTCTCGCTTGGTACACGGAGCTCAAGGCGTATCTCCTCACCATTGGCTTCACGAATTCTCTAGCAGACACGTCTCTGTTCATCCTTCACCGTGGCTCCGACTACATCTATCTTCTTGTCTATGTCGACGATATCCTCGTCACCGGTAACAATAAAAGCCTGATCGCTCACATACTCACCTCACTGGCTGACCGATTCTCAATCAAGGATGCTGAAGATTTGAACTACTTCTTGGGCATAGAAGCTCGTCGCACGATGAAAGGCTTGCATCTATCTCAACGGAAATATATCTTAGACCTTCTTCATCAACAGGACATGCTTGCGTGTAAACCGGTACACTCCCCAATGGCTTCGTCCCCAAAACTCACGCTTAATTCCGGCACACCACTCCCTGACCCGCGAGAATATCGAAAAGTCGTGGGTAGCCTCCAATATCTCAGCTTCACACGACCGGATATTGCTTACGCTGTGAATCGACTTTCGCAATTCATGCACAGTCCCACAACGGATCATTGGCAAGCTGCAAAGCGCATTCTGCGCTACCTTGCAGGCACCTCTTCTCATGGCCTTTTCTTCTCGGCAAGAAACCTACTCTCCCTTCATGCTTATTCGGATGCCGACTGGGCAGGTGATACGGATGATTACGTATCGACCAATGCTTACATATCCTATCTCGGCCAACACCCAGTCTCGTGGTCTGCGAAGAAACAGAATGGGGTCGCAAGATCTTCAACCGAGGCCGAATATCGAGCTGTTGCCAACACTGCCTCAGAAATCCGATGGATATGCAACATCCTCACCGAACTTGGAGTGCCTCTCCCGCATAAACCTGTGGTCTATTGCGACAATGTTGGTGCGATGTTCTTATGTGCAAACCCAGTGTTTCACTCTCGCATGAAACATATCGCCATTGACT