ID Class Order Superfamily Length Start End Strand View
Scaffold18351_LTR_61 RetrotransposonsLTRLTR325361922362246+
Scaffold18351_LTR_62 RetrotransposonsLTRLTR1128362258363385+
Scaffold18351_LTR_63 RetrotransposonsLTRLTR185881586881770+
Scaffold18351_LTR_64 RetrotransposonsLTRLTR316881763882078+
Scaffold18351_LTR_65 RetrotransposonsLTRLTR158882913883070+
Scaffold18351_LTR_66 RetrotransposonsLTRLTR11821071182107235+
Scaffold19110_LTR_67 RetrotransposonsLTRLTR45173985844374+
Scaffold19424_LTR_68 RetrotransposonsLTRLTR647102251102897-
Scaffold19424_LTR_69 RetrotransposonsLTRLTR2197268763270959+
Scaffold19424_LTR_70 RetrotransposonsLTRLTR3106274611277716+
Scaffold19424_LTR_71 RetrotransposonsLTRLTR233846400846632-
Scaffold19424_LTR_72 RetrotransposonsLTRLTR4258960269964526-
Scaffold19424_LTR_73 RetrotransposonsLTRLTR26211680321168293+
Scaffold19424_LTR_74 RetrotransposonsLTRLTR420322754382279640+
Scaffold19424_LTR_75 RetrotransposonsLTRLTR321423581242361337+
Scaffold19424_LTR_76 RetrotransposonsLTRLTR130531367303138034-
Scaffold2004_LTR_77 RetrotransposonsLTRLTR6404351074+
Scaffold20129_LTR_78 RetrotransposonsLTRLTR267358367358633-
Scaffold20129_LTR_79 RetrotransposonsLTRLTR161361623361783-
Scaffold20129_LTR_80 RetrotransposonsLTRLTR1312362343363654-

< 4 5 6 7 8 > Total 13


Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_61

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

325

Start:

361922  

End:

362246

Strand:

+

>Scaffold18351_LTR_61

TTTTCTAATGACCGAGATGAGCAAACTTGAAGAGGTGCTTCAGAACATTCTAGATGGGGAATCAAGCAAAGGTGCAAAGGGCAGCGAAGAATTCACAAATATTGAACAAAGATGGCGAGAACTAGATAAGAAgttcgacgatTTGGTTTCTAAAGTCCGAGTATTAAAAACCCAAATTGTTGAGGAAGTATCAACGATCAATGCTATAACCTTGAAGAGTGAAAAGGAGCTCAGACTGATCCCACCGAGGCAACCAATCAACAAAAAAAGGGATAAGACTATCATCGAGAAAGAAAATCCAATACTCGAGAAGGAAGATCCCATC

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_62

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1128

Start:

362258  

End:

363385

Strand:

+

>Scaffold18351_LTR_62

CTCGTGTGAGGAGCCAAACGATacccgatccaCTTAAATATCAACCTAAGATCCTTTTTCCGGGAAGGAACAAAGGGAGGATAGCGGAGAGACTGAGGAATGCATTTGAACAACAATTGAAGGGTGTAATCATCACTATGCCGATACTAGAAGCTTTAACGATGATTCCCAACACTATCAAATTCCTCAAGGATCTCGTAATTAAGAAGAAGAAGGAGTTCACCGAGGTTGCGTTCCTAACAAATGAATGCAGCGCAGTTATCCTCGACAAAAAGATTCCAAAGAAATTGGACGATCCGGGCAACTTCACTCTCTCTTGCAGTATAGGTCCAATAACATCTGGGAGACTTCTATGTGATCTTGGAGCTAGTGTGAAcctcatgcctcAGTCCATTGCACAAAAGTTGGGATTCAATACATTAAAAGACTGTAGGATGTCACTCGTTCTCGCCGATCGCTCGATAAAAACGTCGGTTAGATTACTCGAAGAGATCCCGGTGATGATTGGTGACTACCAAATTCTAACCGACTTTGTGTTACTCAAGATGCATCATCAGCCTAAAGATCCACTCATCCTAGGAAGACCATTCCTAGTAACCGCGGGAGCCATCATCGATGTTAAAAACGGAAAAATTAACCTTCACCTAAACGGCGAAGTAATGCAGTTTAGTATCaatgaggtgatGAAAAAACCCGAGAAACGAGATCGTATCTTCTACATAGATGATCTTGACTTGTTGGCTGATGGTGTGTTGGATGAAGATGAGCTCGAAAACGAAGAgctaagtgagGAATTCCAAACGCTACCAAATGGAGACGTGGCGGACATGATACCTCGTGAAATGGTTTACGCGAGCTTAACCGAAGGTGACGAAGAAGAAGAAGCCACGGAGGAAGCAAGCGATGGTAAGACTTGTGATGAGGACGATTGGAGTGAACTCAAAGCACCGAAAGTGGAGTTGAAACCACTTCCGAAATGGCTAAGGTACGCATTTCTAgggccaaattcAACATATCCTGTCATAATAACTGATGAGCTTAATGATGATTAAATTTCCCTTTTACTTTGTGAATTGAGAAAATAtagaaaagcaATAGGATATTCCCTAGATGATATCAAAGGCATAT

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_63

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

185

Start:

881586  

End:

881770

Strand:

+

>Scaffold18351_LTR_63

ATGGCAAATTAGCAATTTAAATATTTAAATGCTAATTTTTACTAATCTCTCCTAAAAGTACAGACTTAACTGTCTCTCTTTTGAACAAATGACTAAGGGAACTGAGATTGCTGGCAACTCCAGCGGTGGTGCAGTCAAAAGAACCAGTGAGTCGACACCCCTTCTTGGGACCGGTCAACCATTCG

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_64

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

316

Start:

881763  

End:

882078

Strand:

+

>Scaffold18351_LTR_64

ACCATTCGCTACAGCGACTTTCCTTAACTACAAAATGGTGGACTCAAGGCCCATCATGGAACATGTGCATGAGCTACAAATGATATGTCAAGGAGTAGCAGATGAAGGATGAAGGACTGAAAATCTATGAGACATTCACGGTGAATTCCCTTGTTGAGAAGCTACCTCTAAGTTGGGGGGACTTCAAAAGCTACCTTGCGTACAAGCAGAGGCCTCTGATATTGCTAAACTTGATTTTCAGGCTGCAAAATGAGTCATTGAAACGTGACAAAGCTATGTCAATTCATGGTCATAATGCAAATTTGGTCATGGCTGA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_65

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

158

Start:

882913  

End:

883070

Strand:

+

>Scaffold18351_LTR_65

GTCCGTTTAATGTTTTTTGTCAAGAAAAATGCATTATTCATCAGACGACCGCTCCATATTCACAAGAATCTAACAGAGTTGCCGAACCTAAAATCGAACTCTGAAAGAAATGATGAATGCAATATTGCAGGAATCTGGGGTAGCCCAGAATCTGTGGG

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR_66

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

118

Start:

2107118  

End:

2107235

Strand:

+

>Scaffold18351_LTR_66

GGCCTTGGATCTTGATGAATGTGGGATTTAGGCCCACTAAGATAATTTTTTTTGGAATAAAATTTGTTGATTTTATCAATATTTCCCTTAAAAAATTTTGCATAATATCTTGGATAAA

Boechera stricta (v1.2)

ID:

Scaffold19110_LTR_67

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

4517

Start:

39858  

End:

44374

Strand:

+

>Scaffold19110_LTR_67

ACAACATCGACCACTCACCATCGATGCTTTCTATGAAGGAACGATCGAGCAACACCATCGACCAGGAGTGGTCGATGGCTTTGCTCTGGCTATCAAAGAAAGAGCACATCAGACAGAGCATCGACCGTACACCATCGATGCCATGACAGGAGGAGCCATCGATCAAACCCATCGACCTGAGGTGATCGATGTTTTCCCTGGAGACAACAATGAGACGAGTTCCCTCAAAACCGGGACAAGAGAACTTGAGAAGGCAATTCAGAACATTCTAGATAGAGAATCGAGTAAAGGAGCAAAGGTTGGTGAAGAGTTTACAATCATGGGTCAATAGTGGAACAATCTAGATGAGAAATTCAAAGACCTGGCCTCAAAGGTCCAAAATATAGAAACGCGGACAAAGAAAGAGTCACAGTCAGTCAAAGCAATAACCTTGAAGAGTTGAAAGGAGCTCAGACCGATTCCACCTAAGCAACTAATAAACAAGAAAAGCGAAGGGGCTAacatcgagaaaGAAGACGACCCTATCATGATTGAGAAGGAAGAACAAATAGTCGAGAAGGAAAATCCAAAGATATTTGAGGAGGAACCAGAAGTCGAGGAGGTcatcacggagAAGCCAGACAAAGATAGGGAGCCCGACATTCATACTACGAAAATTCACACAAACGAACCTTAGACTCGCATAAGGAAACAAGTGACACACAATCTCCTAAAATATCAACCTAAAATCCCTTTTCCGGGAAGAATTAAgggaagaatagCGGAGAGAATGAGGAATGCATTTGAAGAACAAATGAAAGATGTGATCATCACTATGCCGATACTAGAAGCCTTGACGAtgattcccaaTGCTAGCAAGTTCCTCAAGGATCTTGTGACTAAGAAGAAAAAGGAACTAACCGAGGTGGCGTTCTTGACACACGAGTGCAGTGCCGTCATCCTCGACAAGAAGATTCCAAGAAAGCTAGCTGACCGAGGCAGTTTCACTCTCTCTTGCACTCTCGGTCAGATAACATTCGGGAGATCTTTATGCGATCTTGGAGCTAGTGTGAATCTATTGCCTCTATCCATTGCACAAAAGTTGggacttactcgattCAAGGAGTGTAAGATGTCGTTAGTTCTCGCTGATCGCTCAGTAAAAACGCCGGTGGGATTACTTGAATACATTCCAGTAATGATTGGTGAATACCAAATACTGACAGACTTTGTGGTACTCAAGATGGATAACGAGCCCAAGGATCCACTTATCCTAGGAaggccattcctAGCTACCGCGGGGGCCATCATCGATGTTAAAAATGGGAAGATTAACCTTTACCTAAACGATGAAGTGATGCAGTTTAGTATCGATGAGGTTATGAAGAAACCCAAAAAACGAGACGTATTTTCTACATAGATGATCTCGAtttactagctaATGGAGAATGGGACGAAGTTGAGCTCAAACACGAATAATTAAATGAAGAATTCCAAACACTACGAATTGAAGACATGACGGACATGAGTCCTCATGAGATGGCGTATGCAAGTCTAACCAAAAATGACGAAGAAGAAGAAGCCGCAATAGAGGAAAGCGGCGATGAGACTTGCGACGAAGACGATTGGAGCGAACTCAAGGCACCAAAAGTGGAACTAAAACCACTTCCAAAAGGGATAAGGTACGCATTTCATGGATAAAATTCAACATATCCTGTCATAATTAGTCATGAGCTTAGTGATGATGAAACCACAATGTTACTCAATGAATTAAAAAATATAGAAAAGCTATAGGATACTCTTTGGATGATATAAAGGGAATATCCCCGTCCTTATGCATGCATATAATACATCTAGAAGATGAATCTAAAAATTCCATTGAACCTCAAAGAAGTTTAAATCCAAATTTACGAGATGTAGTGCGGAAAAAAATTCTTAAACTTCTAgatgcgggtgTTATTTATCCTATTTCCGATAGTAATTGGGTTTCACCTATTCATGTAGTCCCTAAAAATGGTGGAATAACTGTAATAAAGAATGAAAATGACGAATTAATTTCAACTAGAACTATCACTGGACATATGATGTGTATTGATTTCAGAAAATTAAATGCTGCCACTAGAAAATATCATTtttctcttccgtTTATTGATCAAATATTAGAACGATTAGCAAATCACTCTCACTATTGCTTTCAGATGGGTATTCGGGATTCTTTCAAATCTTGATACATCCTCAAGATCAAGAAAAAATAACATTTACATGTCCTTATGGTACCTTCGCTTACCGAagaatgtcgtTTGGGTTATGTAATGCACCTGCAACTTTTCAACGGTGCATGATGTCAATATTTTCTGACTTAATTGAATCAGTAGTTGAGGTATTTATGGATGATTTCTCTGTGTAtggctcttcgtttggtggttgtttgtctaatttgtgcaaggtacttgaacggtgcgaagagacaaacCTAGTACTTAATTGGGAGAAGTGTCATTTCATGGTGAGAGAAGGAATCATCTCGGACATAAGATATCGGAAAGAGGAATTGAAATCAACAAGGCCAAGATCAATGTAATGACGAGTCAGGGCCTCCAAAAACAGTGAACGACATATGAAGTTTCCTTGGTCATGCTAATTTTTATCGAAGATTCATCAAAGATTTTtctaagatagcaagaccactcaccagcatgctatgcaaggatgtcgagttcaacTTCGATGACGCATGTTTCGAAGCATTCCGATCGATCAAGAAAGAGCTAGTTAGTGCACCGATAGTACAACCGCTAGATTTGGGGTTTCCGTTCGAGATTATGTGTGATGCTagtgactatgcCGTAGGAGCTGTGCTTGGGCAACGCAAGGACAGAAAAGTGAATGCTATCTATTATGCAAGTAGGACTCTAGATGAAGCACAAATGAATTATGCCACTACGGAGAAAAAGCTTCTAGCGATCGTCTTTGCTTTTGAGAAGTTTTGCTAATACTTAGTAGGTTCTAAAGTCATTGTACACACGGATCATGCGGCGCTAagatatctacttgctAAGAAGGATGCAAAACCGAGGCTGCTCCGCTGGATACTACTCCTCCAAGAATTCGATTTGGAAATAAAAGACAAGAAAGGAATAGAGAACGGAGTGGCGGACCACCTTTCTCGGATGAGAATCGATGCCAAAATCCCTATCAACGATTCATTACCAGAGGAACAAGTCTATGTAATTAGAGTATTTGTCGGCGAGCACAACCTCATAAGGAGCTGAAAAGCATCAACGCCATCCAGGACAAGTCACCATGGTACGCCGACATAGTCAATTATCTGGCTTGTGGAGAAAAACCACCTGATCTTGTCTGATATCACAAGAAAAAGATTTTCAAGGAGATAAATCGGTATTATTGGGACGATCCAAACCTCTACAAACTATGTAAGGATAAAATATACATAAGATGTGTTTCTGAGAATGAGGTTCACGAATCCTGACGGGATGCCATGAATCTACATACGGAGAACATTTCGCTACATTCAAGACAATAGCTAAGGTGTTGCAAGCTGGATTTTGGTGACCGACTTTATTTCGAGACGCTCACCGATTCATCTTAGCCTATGATTCATGTCAAAGAAGAGGGAACACAAGTAGGAGGAATGAGATGCCTCAAAATCCGATAATAGAGGTAGAAGTTTTCGATGTATGGCGGATAGATTTTATGGGACCTTTCCCAAAATCACATGGAAACAACTACATCCTAGTAGCAATAGATTACGTATCTAAATGGGTAGAAGTTGTGGTGAGTCCAACAAACGACGCAAAGATAGTTCTTAAACTTTTTAAGAGCTTCATTCTTCCACGATTCGGAATCCCGCGAGTGGTGATTAGCGACGGAAGGACACACTTCATCAACAGAACTTTCTATAAGCTCTTACGAAAGCATGGTGTCAAACATAAAGTGGCGACACCATATCATCCTCAAACAAGTGGACAAGTGAAAGTTTCCAACCGTGAAATCAAAGCAATCTTAGAAAAGACGGTGAACATTTCACGAAAGGATTGGTCACTCAAGCTTGACGATGCTTTGTGGGCCTATCGAACAGCTTTCAAAATGCCTATAGGTACTACTCCTTTCAATCTTTTCTATGGAAAATCTTTTCATTTACCGGTGGAGCTCGAGTATAAAGCTATGTGGGCCTCAAGATGCTGAACTATGACATCAaaaccgctgcTGAAAAGCGCCTCATGCAATTAAATGAACTAGACAAGATTCGCCTGGATGCCTATGAGAATGCTCGGATATACAAAGAAAGGACAaaagcattccaTGACAAGCGAATACTTCAACGAGAATTTAAGGTCAACGATCAAGTCCTGCTTTTCAACTCTCGATTTAAGTTTTACAGAGCTATAGAATTAAGTTTTCCAGGCAAACTTTGATCTCGTTGGTCCGGACCATTCAAGATAAAAACGGTGACGCCTTATAGAGCTATAGAATTATGGGAAAATAACGGGGAAAGCTTCACGGTGAACGGTCAACGT

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_68

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

647

Start:

102251  

End:

102897

Strand:

-

>Scaffold19424_LTR_68

TCCACTAGAGTCATCCCAAGATTTGCATCTTGCCCCAAAAAAGTTTTGTGGCTAGCTACGTCTAGTAGTATACGGTATTCATGTGTCACTCctcggtagagAATGCTAAGTAAATGCACATCGTTGAATCCATGATGAGGACATTGCGTGGTGTAGCCCACAAGTCTTTTCCACGCCTCTCCAAAGCTCTTGGTGCTTTGTTGTGTGAAGTTTGATATCTTGTTTCTCCAAAAAGTTATCCTAGCGTTCGAGTAGAACTTTTTCAGGAATGCTTACCGGTATTGCCTCCACGTCGTAACAGTCTCCGATGGAATGTTCATCTCCCATTGATGTGTTTCACCCCTAAGTGAAAATGGAAATAAACGCAGTTTTAGTGCATCTTCAGAGAGACCATTTATGTGTACCATCCCACACAACTTGTCAAAGTTATTCAGATGTTCTATAGGGCTCTCCGTTGATAGACCTTGGAACTTTTCTCTTTGGACAATGTTAACCAAGTCGACCTTGATTTCAAACTCGACATCTCCCACTGGTGGTGGTTGTATGCCCGTGCAGTTGCCATGACTTGTTGGCTCGTCGGCCATGCCTATTGTTCGtgttgctcttGGCATACGCATCACGTTCTCGTCTATCCAGTCCAACAACTG

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_69

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

2197

Start:

268763  

End:

270959

Strand:

+

>Scaffold19424_LTR_69

TGGACTAGTTGCTGAATTGAATAGACGAGAATGTGATGCGTATGCAGAGAGCAACACGAATAATAGGCATGGTCGACGAGCCAACAAGCCAATAACCGCATGGGCATACAACCACCACCAGTGGGAGATGTCGAGTTCGAAATCAAGGTGGACTTGATTAACATGATCCAAGGAGAAAAATTCCTAGGCCTATCAAAGGAGAACCCTATGGATCATCTGGATCACTTCAACAAGTTATGCGGGATGATACACATAAACGGCCTCTCTGAAGATGCATTAAAACTTCGTATATTCCCATTCTCACTTGGGGATAAAGCACATCAGTGGGAGAAGAACATCCCATCAGAGACTATTACAACGTGgagtcaatgccGGAAAGCGTTCCTGAAAAAGTTATACTCAAACGCTAGGACAGCTCATTGGAAAAACAAGATATCAAACTTCGCACAACGAGGCACTGAGAGTTTTAGAGAAGCGTGGGAGAGGATTGTAGAGTACACCAGACAATGCcctcatcatggATTTGGCGATGAGTCCTTGCTGAGCATATTTTACCGGGGAATGACTCCTAAGTATCGTACGTTACTCGATGCAGGGAGCTGTAGAGCTTTCTTAGGGCAAGACGCGCAACGTGGAAGGAAGTTAGTGGAGAATCTAGCCGAGAGTGATGCAAACTACGGAGGAGACTATGATCGAATAAACAAACATGCTGACATACATGAAGATGAGGAGAAGCTGACCATGGAGGCGCTACACGAAAAGTTAGACAAGGTTCTGAAATCGACGCAACATTTCGTCTCGTCAAAACGATGTGGAGAACAACACCATCGACCAGGAGAGGTCGATGGCCTTCCTGGAAGCATCATCAGGCATAAGCATCGATCGTACGCCTCCGATGCAACACCGGATACTAACATCGATCAAGAACATCGACTGTACATGGTCGATACCTTTCACATCGGACCAGACCATCGACCATGCGTGGTCGATGCTCTTGCTAAGAACAACGAAGAAACGAGTTTCTTGACGACTAAGACGGACAAAATCGAGGGGATGATTCAGGATGTCATGGAAAGACAAACAAGCATGGTTGCAGGGATTAGTCGAGAGTTCAAAAAGGTTAATCAACGGTGTCATGAGTTAGACGAGAAGTTCGAAGACTTGGTTTGTAAAATCCAAAAGCTAGAAGCCCGAACAATGGAGAAAGCACCGACGATCAATGCTATAACCTTGAAGAGTGGAAAGGAGCTCAGActgatcccacctaggcaaccaatcaacAAAAAGAGGGAAGAGACTATCATCGAGAAAGAAAATCCGATCATCGAGAAGGAGGATCCAATCCCCGAGAAAGATGATCTTATTGAAATCGAAGAAGAGCCTGAGATTGAAGAAGTTTTTAAGGAGAAGCCGAACAAGGATATGGAGTCCGACATTCGTACAACCAACACTCGTACAAGGGAACCTGAAATTCGTGTAAGGAGCAAAGTGATACCCGATCTACCTAAGTATCAACCTAAAATTCATTTTCCGGGAAGAATTAAAGGAagaatagcggaGAGAATGAGGAACGCGTTTGAAAAACAAATGAAAGGCGTAATCATCACTATGCCAATACTAGAAGCCTTGACGATAATTCACAACGCTAGGAAGTTCCTCAAGGACCTCGTGACTAAGAAGAAGAAGGAGCTCACCGAGgtggcattccTAACGCACGAGTGCAGCGCCGTCATTCTCGACAAAAAGATTCCAAGGATGTTAGATGATCCGAGTAGTTTCACTCTCTCTTGCACTCTCGGTCAAATAACAttcgggaggtCTTTGTGCGATCTTGGAGCTAGTGTGAACTTCATGCCTTTATCAATTGCACAAAAGCTGGGATTTACTCAATTTAAGGAGTGTACGATGTCACTAGTTCTTGTCGATCGCTCGATAAAAATACCGGTTGGATTACTCGAAGACATTCCGGTGAAGATTGGTGACTACCAAATTCTAACCGACTTTGTGGTACTCAAGATGGATCACTAGCCCAAAGATCCATTGATCCTAAGGAGACCATTCTTAGCAACTGCGGGAGCCATCATTGATGTCAAAAACGGAAAAATTGATCTTCATCtaaacaacgaaGTTATGCAGTTTAGTATTGACGAATTGATGAAAAAACCCGAAGAACGAGACCGCATCTTCTACATAGATG

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_70

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

3106

Start:

274611  

End:

277716

Strand:

+

>Scaffold19424_LTR_70

ATAGACGATCTCGACTTGTTGGCTGATGGTGTGTTGgacgaagttgAGCTCGAAAACGAGGAGCTAAGTGAAGAGTTCCAAACGCTACAAAATGGAGACGTGGCAGACATGATATCTCGTGAGATGGCCTACATGAGTCTAATCGAAGGTGACGAAGAAGAAGATGCCACGGAGGAAGCAAGCGATGGTAAGACTTACGATGAAGGCGATTGGAGCGAACtcaaggcgccGAAAGTGGAGTTGAAACCACTTCTAAAAGGGCTAAGTTATGCGTTTCTCGGTCCTAATTCAACATATCCTGTCATAGTAAGTGATGAACTcaatgatgatgaaATTTCTATTTTACTTTGTGAATTGAGAAAGTATAGAAAAGCTATAGGATACTCTTTATATGATATCAAGGACATATCCCCATCCTTATGCATGCATAGAATACATTTAGAAGATGAGTCTTAAAATTCCATCGAACCTCAAAGGCGCTTAAACCCAAATTTGTGTGATGTCGTAAGAAAAGAATTTCTTAAACTTCTAGATGCAGGAATTATTTATCCTATATCTGATAGTAATtggatatcacctgttcatgtagttcctaaaaaggatgttatcactgtggtaaaaaatgaaaatgacgaattaattcatactagaactatcacgggacataggatgtctattgatttttggaaattaaatgctgccactagaaaaggtcatttttctcttctgtttattgatcagatgttagaacgattagtaaatcactctcactattgttttttagatgggtatttggaattctttcaaattctgatacacccgcaaaatcaagaaaaaatgacatttacatgtccttacagtacctttgcttatcgaagaatgccgtttggactatgtaatgcacctgcaacctttcaaaggtgtatgatgtcgatattttcatatctaattgaatcagtagttgaggtgtttatggatgatttctctGTGTATGGTTCTTCGTTTGGTGGTTGTTTGTCTAATTTTTGCAAGGTACTTGAACGATGCAAAGAGACAAACCTCATACTTAATTGGGAGAAGTGTCATTTCATGGTgagagaaggaaTCGTTCTCGGACATAAGATATCGGAAAGAGGGATTGAACTCGACAGGGCCAAGATCGATGTGATGACAAGTCTAGGGCCTCCAAAAATATGGTGAAAGACATACGAAGTTTCTTTGGTCATGCTAATTTTTATCAAAGATTCATCAAAGATTTTTCTAAGATAGCAagaccactcaCCAGCCTGCTATGCAAGGATGTCAAGTTCAACATCGATGATGCATGTTTCGAGGAATTCCAATCAATCAAGAAGGAGCTAGTGAGTGCACCGATAGTAAAACCGCCGGATTGGGAATTGCCGTTTGAGATTATGTGTGATGCTAGTGATtatgcggtaggagcTGTGCTAGGACAACGCAAGGATAAGAAGCTGAATGTCATCTATTACGCGAATAAAACACTAGACGAAGCGCAAATGAATTACACTACTACGGAGAATGTGTTTCTAGCGATCGTCTTTGATTTTGAGAAGTTCCGTCAATACCTAGTCGGCTCAAAAGTCATAGttcacacggaCCATGCGGCATTAAGGTATCTACTTGCAAAGAAAGATGCAAAGCCAAGGCTACTCTGATGGATACTACTTCTTCAAGAGTTTGATTTGGAGATAAaagacaagagaGGAATAGAAAACGGAGTGGCTGATCATCTTTCTCGGACAAGGATGGAGGACGAGATACCTATTGACGATTcactaccagaAGAGCAAGTCTACGCTATTAGAGTATTTATTGGCGAGCACTACCTCAACAAGGAACTGAAGATCATCAACGCCATCAAGGATAAATCACCATGGtatgctgacatCGTCAACTATCTCGCTTGTGGAAAGAAACCGCCTGATCTCGTCGGATATCATAAGAAGTTTTTCAAAGAGATCAACCGATACTATTGGGACGACCCAAACCTCTACACATTATGTAAAGATAAAATCTATAGAAGGTGCGTTCCCGAAGATGAAGTACATGGAATTTTAACGGAATGCCATGGATCTACGTATGGaggacatttcgCTACATTCAAAACGGTAGCTAAATTTTTACAAGCTGGATTTTGGTGGCCAACTTTATTTAGAGATGCTCATTGATTCATTCTAGCTTGTGATGCATGTCAAAgaagaggaaaCATAAGTCGAAAGAATGAGATGCCTCAAAACCTGATAATGGAGGTAAAAGTCTTTGACGTGTGGGACATTGATTTCATGGGACCTTTCCCGAACTCACATGGTAACAACTACATCTTAGTGGTAGTTGATTATGTATCTAAATGGGTAGAAGctgtggcgtgTCCAACAAACGATGCGAAGGTAGTTCTGAAACTTTTTAAGAGCATCATTTCCCCGCATTTTGGAGTTCCGCGAGTGGTGATTAGCGACGGAGGAACGCATTTCATCAACAAAACTTTCGACAAACTACTAAGGAAGCATGGCGTTAGACACAAGGTGGCAACATCATATCATCTTCAAACAAGCGGACAAGTGGATGTTTCAAACCGGGAAATCAAAGCAATCTTGGAGAAGACGGTGTATATTTCACGAAAAGACTGGTCGCTTAAGCTAGACGATGCTTTGTGGGCTtatcgaacagctttcaagactcccattgctacaactcctttcaaccttctctatggaAAGTCTTGTCATTTGCCGGTTGAGCTAGAATACAAAGCTATGTGGGCTGTAAAGATGCTTAACTACGACATCAAAACCGCGGCAGAAAAGCACCTCATGCAATTGAACGAACTAGACAAGATTCGTTTAGATGCCTATGAGAATGCTCGGATATACAAGGAGAGGACAAAAGCATTTCATGACAAGCAAATACTTCACCGAGAGTTTAAGGTAAACGATCAAGTACTACAATTCAACTCTCGTTTGAAGCTCTTTCCGGGAAAGCTCTGATCTCGTTGGTCTGGTCCCTTCAAGATAAAGTCAGTAACGCCTTACGAAGCTATAAAGCTATGAGGCAACAGTGGTGAGAGTTTCAAGGTGAACGGACAACG

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_71

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

233

Start:

846400  

End:

846632

Strand:

-

>Scaffold19424_LTR_71

CAGAAATACCATCGATCCCTCCTGGTCGATGGTGTTGCTCGATGACTCCCTCAGAAAAAGCATCAACCTCTTATGATCGATGTCGTCGTCCGAAGGACTTCTCTGAGATATCTGCATCGACCGTCTGTGGTTGATGTTATGGTCGATGCTGGTGTTTGTTGACCTCTCCAAGATTACCATCGATCTTTCTTGATCGGTGATGTTGTTTTCCGTTACATTCTTTCAGAACAAAA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_72

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

4258

Start:

960269  

End:

964526

Strand:

-

>Scaffold19424_LTR_72

tgtccgTTCACCTTGAAGCTCTCTCCACTATTGCCCCATAGCTCTATAGCTCCGTATGGTGTTACAAACTTTATTTTGAAGGGTCCGGACCAATGAGATCGGAGTTTTCCCAGAAAGAGCTTCAAACGAGAGTTGAATAGTAGAACTTGATCGTTTTCCTggaactttcttCGAAGTATTCTCTTGTCATGGAATGCCTTAGTCTTCTCCTTGTATATTCAGGCATTCTCATAAGCGTCTCAGCGAATCTCATCTAGCTCATTCAGTTGCATTAGGCGCTTCTCCGCAGCGGTTTTTATGTCGTAGTTCAGCATCTTGACAGTCCACATAGCTTtgtattctagctcaaccgacaaatgacaagaCTTTCTATAGAGAAGGTTGAAAGGAGTTGTACCAATGGGAGTCTTGAAAGCTGTTTGATAAGACTACAAAGCATCGCCTAGCTTAAGCGACCAGTCTTTTCGTGAAATATTCACAGTCTTCTCCAAGATTGCTTTGAtttcccggttTGAAACCTCCACTTGTCCGCTTTTTTGAGGATGATATGTTGTTGCCACCTTGTGTCTAACGCCATGCTTCTTTAGGAGTTTATCGAAAGTTTTGTTAATGAAGTGCGTGCCTCCGTCGCTAATCACCACTCGCAGAACTCCGAAATGCGGAAAAATGATGCTCTTAAAAAGTTTCAGAACTACCTTCGCATCGTTTGTTggacacgccacaacttctacccatttaAATACATAATCAACCGCCACTAAGATGTAGTTGTTACCATGAGAGTTCGGAAAAGGTCCCATGAAATCGATGCCCCACACGTCAAAGACTTCTACTTCCATTATCGGGTTTTGAGGCATCTCGTTCCTTCGACTTTGTTTTCTTTTCTTTGACATGCATCACAAGCTAGGATGAATCGGTGAGCATCTCTAAATAAAGTCGGCCACCAAAACCCAGCTTGTAGAACTTTAGCGACTGTCTTGAATGTAGCGAAATGTCCTCCGTATGTCGATCCATGGCACCCCGTTAAAATTCTGTGAACTTCATTCTCCGGAACACATCTTCTATATATcttatccttgcATAGCGTGTAGAGGTTCGGATCATCCCAATAGTATCTGTTTATCTTCTTATAGAACTTTTTCTTATGGTATCCGATGAGATCGGGCGGTTTCTCCCCACATGCAAGATAGTTGACGATGTCAGCATACCATGGTGACTTgtccttgacgGCGTTGATGCTTCTCAGCTCCTTGTTGAGTTTGTGTTCGCCAACAAGAACTCTAATGGCATAGACTTGCTCTTCCGATAGTGATTCATCAATAGGAATCTCATCAGTGATCCTcattcgagaaaGGTGATCAGCTACTCCGTTCTCTATTTTTTTCTTGTCTTTTATCTCTAAATCGAACTCTTGTATGAGTAATATCCAGCAGATTAGTCTTGGTTTCGCATCTTTCTTCGCAAGTAGGTACCTTAGGGCCGCATGATCAGTGTGTACAATGACTTTAGAACCGACCAAGTATTGGAGGAACTTCCCAAAAGCAAAGACAATCGCTAGAAGTTCTTTCTCCGTagtggcgtaatTCATTTGCGCTTCGTCTAGCGTCTTACTCTCATAATAGATGACGTTCAGCTTTttatctttacgTTGTCCAAGCACAGCTCCTACCCCATAATCGCTAGCATCACACATGATCTCGAATAGTATCCCCAATCTAGTGGTTGTACTATTGGTGCGCTTACTAACTCCTTGATGAATTGAAATGCTTCGTGACATGcgtcatcaaagTCGAAGTTCACCTCCTTGCATTGCAATCTCATGAGCGATCTTACTATTTTTGAGAAGTCTTTAATGAATCTTCGATAAAATCCCGCATGACCCAGAAAActccgtatgtcTTTCACCGTTTTTGGAGGCCCTAGGCTTGTCATCATATCAATCTTGGCTTTGTCGACTTCAATCCCTCTTCCCGATATCTTATGCCCAAGAACGATTCCTTCTCTCACCATGAAATGGCACTTTtcccaattaagtacgaggtttgtctcttcgcatcgttcgagtacctttcacaaattaGACAAACAACCACCAAACGAAGAGCCATACACAGAGAAATCATCCATAAACACCTCAACTACATATTTAATTAAATCTGAAAATATCGATATCATACACTGTTGAAAAGTCGTGGGTGCATTACATAATCAAAACGACATTCTTCGATAAGCAAAGGTACCGTAAGGACATGTAAATATCATTTTTTCTTGATCTTGAGGATGTATTGGGATTTGAACGAATCCTGAATACCCATCTAAAAACCAATAGTGAGAGTGATTCGCTAATCTTTCTAACATTTGATCAATGAATGGAAGAGGAAAGTGATCTTTTCTAGTGGCAGCATTTAATTTTCAAAAATCAATACACATCCTATACCCGGTGATAGTTCTAGTAGGAACTAGTTAGTCATTTTCATTTTTTTTCACAGTGATACCACCTTTTTTAGGCACAACATGAACATGTGAGACCCAAGTACTATCTGATATAGGATAAATAATACCTGCATCTAGAagtttaagaatttgttttcttacgacatcacgcaaatttggatttaAACGTCTTTGAGGTTCAATAGAATTCTTAGATTTATCTTCTAAATGTATTCTATGCATGCATAAGGAGGGGGATATGCCTTTGATATAATCTAGGGAATGTCCTATTGCTTTTCTATATTTTCTCAATTCACAAAGTCAAAGGGAAATTTCATCATCATTAAGTTCACCACTTACTATGACACGATATGTTGAATTAGGACCGAGAAACGCGTACCTTAGCCTTTTCGGAAATGGTTTCAACTCCACTTTCGGCGCCTTGAGTTCACTCCAATCGCCTTCATCGCAAGTCTTACCATCGCTTGCCTCCTCCGTGGTTTCTTCTTCTTCGTCACTTTCGGTTAGGCTCGCGTAAGCCATCTCACGAGGTATCATGTCCGCCACGTCTCCATTTGGTAGCGTTTGGAATTCctcacttagctcttcgtttttgAGCTCATCTTCATCCAACACACCATCAGCCAACAAGTCGAGATCATCTATGAAGAAGATACGATCTCGTTTCTTGAGGTTTTTCATCACATCATTGATACTAAACTGTATTACTTCGTCGTTTAGGTGAAGGTCGATTTTTTGTTTTTAACATCGATGATGGCTCCCGCGGTTGCTAGGAATGGTCTCTCTAGGATGAGTGGATCTTTACGTTGGTGATCCATCTTGAGTACCACAAAGTCGGTTCGAATTTGGTAGTCACCAATCATCACTGGGATGTCTTCACGTAATCCAACCGGCGTTTTTACCGAGCGATCGGCGAGAACGAGTGacatcctacatTCTTTGAAGGTATTGAATCCCAATTTTTGTGCAATGGACTGAGGCATGAGGTTGACACTAGCTCCAAGATCACATAGAGATCTCCCAAATGTTATAGGACCTATACTACAAGAGAGAGTGAAGCTGCCCAGATTGTCCAATTTCTTTGGAATCTTTTTGTCGAGGATAACTGTGCTGCATTCATGTGTTAGGAACGTAACCTCGGTGAGCTTCTTCTCCTTCTTAGTTACGATATCCTTGAGGAATTTGCTAGCGTTGAGAATCATCGTCAAAGCTTCTAGTATCGACATAGTGATGATTACGCCCTTCATTTATTGTTCAAATGCATTCCTCAGtctctccgctATCCTCCCTTTGATCCTTCCCAGAAAAGGGATATTAGGTTGATATTTAAGTGGATCGGGtatcgtttggCTCCTCACACGAGTATCAGGTTCCACTTCCGTGTCTGATTTTTCCTTAATAACTTCTTCAATCTCGTGTTCCTCCTCGGTTACGATGGGATCTTCTTTCTCGAGTATTGGATCCTCcctctcaatgatcggattttctttcTCGATGATAGTCTCATCCCTCTTTTTGTTGATTGGTTGCCTCGGTGGGATTGGTTTGAGCTCCTTTCCACTCTTCAAGGTTATAGCATTGATCATTGGTGCTTCCTCAACAGTTCGAGTTTCTAATACTCGAACTTTAGAAACCAAATCGGCGAACTTCTTATCTAGTTTGCGCCAGCTTTGTTCAATGTTTGTGAATTCTTCGCTGACCTCTGCACCTTTGCTTGATTCCCGATCTAGAATATTCTTAATCACCTCTTCAAATTTGCTCGTCCCGGTCGTTAGAAAACTTGTCTCTTTGCTGCCCCATCAAA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_73

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

262

Start:

1168032  

End:

1168293

Strand:

+

>Scaffold19424_LTR_73

ACACGCCGACATCCATGAAGCCGAGGAGAAGCTGACCATGGAGGCATTGCATAAAAAAATAGACAAGCTTCTGAAATCGACGCAACATTTCGCATCAACAAAACAACACGAAGAACAACCACATCGACCGTGGGAGATCGATGGTTCTCCGGGATGCAACATTGAGCAGATGCATCGACCATACCAGGTCGATGCTCTACCCATCGAGCCACTTCATCGACCACAAGCCATCGATGTGATTCCAAAAGGACACATCGACCAA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_74

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

4203

Start:

2275438  

End:

2279640

Strand:

+

>Scaffold19424_LTR_74

TTTTCTTGGGGCAACAAGGAGACATATTCTTTAACAACCGGAACAGGCAAACTTGAAAAGATGATTCAGAACATTCTAGATGGACAATCGAGCAAGGGTGCAAAGGTGAGTAAAAGATTCACGAACATTGATCAAAGATTGCGCGAGCTAGATAAGAAGTTtgaggatttaGTTTCTAAAGTCCAAAAACTAAAAACCAAGACATTGGAGGTAACACCAACAATCGATGAGATAACCTTGAAGAGTGGAAAGGAGCTCAAACTAATCCCACCTAACAACCAATCAGTAAAAAGAGCAACGAGACTATCATCGAGAAGGAAAACCCAATCCTCGAGAAGGAAGATCCCATTGAAATTGAGGAAGAGTCTGAGATCGAAGAAGTTATTAAGGAGAAACCGGATACAAATGGAGAGCCTAACACTCGTGTAAGGAGCAAGGAGACACTCGACTTACTTTATTATCAGCCTAAGATTCCTTTTCCGGGATAAATTAAAGGGACAATAGCGGAGAGAATGAGGAATGCATTCGAGCAACAAATGAAAGGGGTAATCATCACTATGTTGATGTTAGATGCTTTGATAATGATCACTAATGCTAGTAAGTTCCTGAAGGACCTCGTGACTAAGAAGAAGAAGGAACTAACAGAGGTGGCGTTCTTAACACACGAATGCATTGCCATTATCCTCAACAAAGTGATCCCGAAGAAGTTAGACGATTCGGGCAGCTTTACCCTTTCTTGCACCTTGGGAACGACAATATTTGGGAGATCTTTATGCGATCTTGGAGCAAGTGTAAGCCTCATGCCTCTGTCCATTGCAAATAAGTTGGGATTTACTCAATTCAAAGAGTGTCGAATGTCGCTTGTTCTCGCTGATCGCTCGATAAAAACATCGGCTGGACTACTAGAAGATATTCCGGTGATGATCAGTAAGTATCAAATACCTACTGATTTTATGGTACTAAAGATGGATCAAGAACCCAAGGACCCACTTATCATGGGGAGACCATTCCTTACAACCGGTGGAGCCATCATTGATGTCAAAAACGAAAAAATCAACCTTCATTTGAACGATGAAGTTATGCAATTTAGCATTGATGAAGCGATGAAGAAACCCGAGGAGCGAGATCGTATTTTCAACATAGACAATCTTGACTTGTTAGCTGATGGAGTCCTAGACGAAGTTACACTAAACAACGAGGAGTTTCAAACTTTACAAAATGGCGAAGTAACTGACATGATACCTCGTGAGATGGCTTATGCGATGTTAACCGAAAATGACGAGGAGTTCACAGAGCCAGCAAGCAATGGTAAGACTTGCGATGACGATGATTGGAGTGAACTGAAAGCACCGAAAATGGAGCTAAAACCACTTCCAAAAGGGCTAAGGTACTCATTTCTCGGTCCCAATTCAACATATCTTGTCATAATAAGTGATGAGCTTAATGATGATGAAATCTCTCTCTTACTTTGTGAATTGAAAAAATATAGAAAAGCAATACAATATTCTCTAGATGACATCAAGGGCATATTCCCATCTTTATGCATGCATAGGATTAATTTAGAAGATGAATCTACGAATTCTATCAAACATCAAAGGCGTTTAAATCCAAATTTGTGCGATGTTGTACGGAAGGAGATTCTTAAACTTTTAGATCCAGGTATTAACTATCCCATTTCAGATAGTATTTGGGTATCGCCTGTTCATGTGGTGCCTAAAAAAGGTGGTATCATTGTGATAAAGAACCAACAGGATGAATTAATTCCAATTAGAACTATCACAGGACATAGGATGTGCATCGATTTTAGGAAGTTAAACGCTGCCACTAAAAAAGACATTTTTCCTCTTCCATTTATTAATCAAATGCTATAACGATTAGCTAATCATTCTCACTATTGTTTCTTAGATGGGTATTCGGGATTCTTTCAAATCCCGATACATCCTCAGGATCAAGAGAAAATGACATTCACATGTCCCTACGGTACCTTTGCTTATCGAAGAATGTCATTTGGATTGTGTAATGCACTTGTAACTTTTCAAAGGTGCATGATGTCGATATTCTCGGACTTAATTAAATCAGTAGTTGAAGTTTTCATGGATGATTTCTCTGTGTATGGTTCTTCGTttggtggttgtTTGTCTAATTTGTGCAAGGTACTTGAACGATACGAAGAGACAAAACTCGTGCTTAATCGGGAGAAGTGTCATTTCATGGTAAGAAAAGGAATCATTCTTGGGCATAAGATGTCGGAAAGAGGGATTGAAGTCGACAAAGCCAAGATCGATGTGATGACAAGTTTAATACCTCCAAAAACGGTGAAAGACATACAGAGTTTTCTCGTTAATGCTGGATTTTATCGAAGATTCATCAAAGATTTCCCGAAAATAGCAAGACCACTCACTAGATTGTTATGCAGGGAGGTAGATTTTGACTTTGATGATGCAAGTCACGAAGCATTCCAATCCATCAAGAAGAAGCTAGTGAGTGCACTGATAGTACAACCACCGGATTGGGAGTTACCGTTTGAAATCATGTGTGATGCTAATGATTATGCGGTATGAGCTGTGCTAGGACAACGAAATGTTAAGAAGCTGAATGTCATCTATTACGCGAGCAGAACACTAGACGAAGCGTAAATGAATTACGCTACTACGGAGAAAGAACTTATAGCAATTGTCTTTGCTTTTGAGAAGTTTCGTCAATACCTAGTTGGTTCTAAAGTCATCGTACACACGGATCATGCGGCAGTAAGGTATATACTGGCGAAGAAAGATGCGAAGCCAAGACTATTCCGTTGGATTCTACTCCTTCAAGAGTTTGATTAAGAGATAAAGGACAAGAGAGGAATAGAGAATGGAGTAGCTGATCACCTTTCTCGGATGAGGATCACTGACGAGATCCCTATTGATGGTTCACTACCGGAGGAGAAAGTCTATGTTATTAGAGTACTTGTCGGCGAGCACAACCTCACCAAGGAGCTGAAAAGCATCAACGCTATCAAGGACAAGTCACCATGGTACGTTGACATCGTTAACAATCTCGCATGTGGAGAGAACCACCCGATCTTGTCGAATACCATAAGAAAAATTTTTACAAGGAGATAAACCGATACTATTGAGATGATCCAAACCTCTACATGTTGTGTAAAGATAAAATATACAGAAGATGTGTTCCGGAGCATGAAGTTCACGGGATTTTGATGGGATGTCATGGAGCAACATACAGAGGACATTTTGCTATATTCAAAACGGTGGCTAAAGTTTTACAAACTGAATTTTGGTGGCTGACTTTATTTAGAGACGCTCACCAATTCATCCTAGCTTGTGATGCATGTCAAAGGAAAGGAAACATATGTCAGAGAAACGAGATGCCTCAAAACTCAATAATGGAAGTAGAAGTCTTTGACGTATGGGGAATCGATTTCATGGGACCTTTCCCGAACTCTCACGGTAACAACTACATTTTCGTAGTTGTAGATTACGTATCTAAATGGGTGAAAACAATAGCATGTCTAACAAACGATGTGAAAGTAGTTCTAAAACTTTTTAAGAGCATCATATTCCCGCGTTTTAGAGTTCTGCAAGTGGTAATTAGTGACGTAGGAACGCACTTCATGAACATAACTTTCGATAAACTCCTATGGAAGCATGGCGTTTGACACAAGGTGGCGACACCATATCATCCTCAAACGAGCGGACAAGTGGAGGTTTCAAACCAGGAAATCTAAGCGATGTTGGAAAGGACGGTGAATATCTCACGAAAAGATTGGTCTCTTAAGCTAGACGAAACTTTGTGGGCTTATAGAATAACTTTCAAGACCCCCATCGGTACGACTCCTTTCAATTTTTTCTACGGAAAATCTTGTCATCTACCGGTGGAGCTCGAGTACAAAGCTATGTGGGCCGTCAAGATGCTAAACTACAATATCAAAACTGCTGCAGAGAAGCGTCTCATACAACTAAACGAAATTCGCCTAGACGCTTATGAGAATGTCTGGAAATACAAAGAGAAAACTAAAGCATTCCATGATAAAAAGATACATCGACGAGACTTTAAGGAAGATGACCAAGTTCTGCTTTTCAACTCATGCCTGAAACTTTTTCTGGGCAAGCTTTGATCTCGTTGGTCCAGACCTTTCAAAATCTCATAGCTATAGAGCTCTGGGAAACAGTGAAGAAAGCTTCAAAGTGAACGGACAACATT

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_75

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

3214

Start:

2358124  

End:

2361337

Strand:

+

>Scaffold19424_LTR_75

AAAGAAAACATCGATCAAGCACATCGATCGTACGCGGTCGATGCTATACCTGGGGAAGACGAAAAAGCCATATTCTTGACGATAGAGACGGACAAATTTGAGGAGATGACTCGGAATATCTTAGAGGAGCTGACAAGCATGGCTACAACTGCTAGAGAAGAGTTCAAAGAGGTCAATAAACGGTGCAACGAGCTAGATGAAAAGTTCGAAGACTTGGTTTCAAAAATTCGGATTCTAGAGTCTCGAAAGATAAAGGAGGCACCAACAATCAATGCAATAACCTTGAAAAGTGGGAAAAAACTCAAACCGATCCCATCAAAGCAACCAATCAGCAAGAAGAGCATAGAGACTAACATCGAGGAAAAGACGATCCTCTAACAATCGAGAAGGAAAATCCCATCATATTAGAGAAAGAACCCGAAGTTGAGGAGGTCATTACGGAGAAGCTGGACGAGGATATGGAGCTCGACATTCGTACAACCAACACTCGTACAAGGGAACCTGATACTCGTGTAAGGAACCAAATGATACCCGATCTACCTAAGTATCAATCTAAAATTCCTTTTCCGGGAAAAATTAAAGGAAGAATAGCGGAGAAAATGAGGAACGCGTTTGGAGAAGAAATGAAAGGCGTAATCATCACTATGCCGATACTAGAAGTCTTGACGATGATTCCCAACGCTAGCAAGTTCCTCAAAGACCCCATGACTAAGAAGAAGAAGGAGCTCACCGAGGTGGCATTCCTAACACACGAGTGCAACGCTGTCATTCTCGACAAAAAGATTCCAAGGAAGTTAGACAAAAAGATTCACTCTCTCTTGCACTCTCGGTCAAATAACATTCGGGAGGACTTTGTGCGATCTTGGAGCTAGTGTGAACCTCATGCCTCTATCCATTGCACAAaagttggggcTTACTCGATTCAAGGAGTGTAAGACCGCTCGATAAAAACACCCGTGGGGCTTTTAGAAATTCTGGTAATGATTGGTGATTATCAAATACCGACTGATTTTGTAGTACTCAAGATGGATCACAAGCCCAAAGATCCACTTATCCTAGGGAGACCATTTCTAGGGAGCCCAAAGACACCCACGAGCCATCATCGATGTTAAAAACAGAAAGATCAACCTTCACCTAAACGATGAAGTCTTGCAGTTTAGTATCGATGAGGTgatgaagaaacCCGAAGAACGAGATCGTATTTTTTACATAGACGATCTCGACTTGCTAGCTAatggcatattAGATGAGGTTGAACCTAACGACGAGAACCTAAGTGAAGAATTCCAAACTCTACAGAATGGAGACATGGTGGACATGATACCTCGTGAGATGGCTTATGCGAGTCTAACCGAGGGTGAAGAAGAAAAGGAAGCCACGGTGAAAGCAAGCGATGGTGATACATGCAACGAAGACGATTGGAGCGAGCTcaaagcaccaAAGGTGGAGCTGAAACCACTACTGAAAAGGCTAAGGTACGCGTTTCTCGATCCTAATTCAACATTCCTGTCATAATAAGTGATGAACTAAATGACGATGAAACCTCAATGCTGCTTAATGAattaaaaaaatataggaaagccataggatattctgtagatgatatcaagggaataTCCCCATCCTTATGCATGCATAGAATACATCTAGAAGATGAATCTAAAAAGTCTATTAAACCTCAAAGACGTTTAAATCCAAATTTACTAGATATAATACGGAAAGAGATTTTTAAACTTCTAGATGCAGGTGTTATTTATCCTATTTTAGATTGTACCTGGGTTTCGCATGTTCATGTAATACCTAAAAAGGGTGGTATCACTTTGATAAAAAATAAAAACGATGAATTAATTCCTACTAGAACCATCACCGGACATATGATGTGTATTGATTTTAGAAAATTAAATGCGGCCACTAAAAAAGATCATTTTTCTCTTCCGTTTATTGATCAAATGTTAGAACGATTATCGAATCATTCTCACTATTGCTTTTTAGATGGGCATTCGGGATTTTTTCAAATCCCTATACATCCTCAAGATCAAGAAAAAACgacatttacatGTCCTTACGGTACCTTTGCTTATCGAGTAATGCCATTTGGATTATGTAATGCACCTGCAACTTTTTAAAGATGTATGATGTCAATATTTTCAGACTTAATTGAATCAGTGGTTGAAGTGTTTATGGATGATTTCTCCGTGTATGGTTCTTTGTTTGGTGGTTGTTTGTCTAATttgtgcaaggtACTTGAACGATGCGAAGAGACAAACCTCGTACTTAACTGGAAAAAGTGTCATTTCATGGTGAGAGAAGGAATcgttctcgggcATAAGATATCGGAAAGAGGGATTGAAGTCGACAAGGCCATGATCGATGTGATGACAAGTTTAGGACCTCCAAAAATGGGGAAAGCATACGAAGTTTCCTTGGTCATGCTGGGTTTTATTGAAGATTCATCAAATATTTTTCTAAGATAGCGAGACCACTCACCAGCCTACTATGCAAAGATGTTGAGTTCAACTTCGATGACGCATGTTACGAAGCATTCTGATCGACCAAGAAAGAGCTAGTGAGTGCGTCGATAGTACAACCGCTGGATTGCAAGTTATCGTTCGAGATTATGTGTGATGCTAGTGACTATGCCGTAGGAGCTATGCTTGGACAACACAAAGACAAGAAGCTAAATGGTCTCCCTATGCAAGTTGGACGCTAGACGAAGCACAAATGAATTACACCACTACGGAAAAAAAGCTTCTAGAGATCGTCTTTGCTTTTGAGAAGTTCCGCCAATACTTAGTCGGTTCTAAAGCCATTGTACACACGGATCATGCGACACTAAGGTATCTAATCGCTAAGAAGGATGCTAAACCAATGCAACTCCGCTGGATACTACTCCTTCAAGAGTTCGGTTTGGAGAAAAAAGAAAAGAAAGGAATAGAGAACGGAGTAGCGGACCACCTTTTTCGGATGAGAATCACTGACGAGATCCCTATTGACGATTCACTACCGGAGGAATAGGTCTATGCTATTAGATTACTCATTGGCAAACACAACCTCAACAAGGAGCTGAAAAGCATCAACACCATCAAAGATAAGTCACCATGGTATGCCGATATCGTGAACTACCTCGCTTGTGGAGAAAAGCCGCCCGATCTCATCGGATATCATAAGAAGAATTTTTTCAAGGTTATCAACCGGTACTATAAGGACGATCCAA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR_76

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1305

Start:

3136730  

End:

3138034

Strand:

-

>Scaffold19424_LTR_76

CCTGACCGTTAGTTTGAGGGTGGTAGGGAGTGGATACCTTGTGTTTCACAccattcttccttaggaggttttcaaaaatcttgttgataaagtgagaacctccatcgctaatcaccactcttggcacgccaaaccttggaaaaatgactgatttaaacatcttgaccaccactctagcatcattcgtagggcttgccaaagcctctacccatttggacacgtaatccactgcaaccaaaatgaattcattcccataagaggatgggaatggtcccatgaaatcaataccccacacatcgaaaACTTCAACTTCCAGAATGAAGTTCTGAGGCATTTCACTGCGCTTGCTGATATTCCCTTGCCTCTGACAAGCATCGCATCTAGATATTAACCGCTGAGCATCTCGGAACATCGTAGGCCACCAAAAACCCGATTGTAGaacctttgaaaccgtcttgaaagtggcaaagtggccagcatatggtgaactatggcaatgatgaaggatccctggtatctcctcttcggccacacatctcctgaatatcccatctgagcaatgcttatacaaaaagggttcatcccaaaagtacctcttaatgtctctaaggaatttccttcttttgtttcccacaaagtcttcaggctccttctcagcagctaagaagttggctatctctccaaaccagtgaaaattgggttggtgtccctttttaattgaactgaagaaacattccggagcacgtgctccgagtgggtgctcctccgggtgctcgccaacgcttccagtactgattgcataaacctcTTCACCGGGCAGACTATCATCCATAGGTATTTCTTCTTCAATATTCATCCATAGGTGTTTCTGATTGCCACGCCATTGTCAGCCCCTTTCTTGTCCTTAATCTCCAAGTCGAACTcttgcaacaataggatccatctcaaaagtctaggcttggcgtctttcttagtcagcaagtacttcaagacagcatggtctgtatgaacaatcacttttgatcccacaagatatgatctaaacttctcaaaagcgaaaataatggctagaagctccttctcggttgtggcgtatttacactgcgcctcatccatagtccgactagcgtagtagacaacatgtagcttcttgtctatcctctgtcctaacacggcccctacagcaaagtcactcgCATCTGTCATGACTTCAAAAGGCAAGTCCCAATTGGGTGGCTGAACAATCAGAGCGCTGACCAAAGCCCCCTTAATAGTGTGAAAGGCCTCTAAGCATGCATCATCGAA

Boechera stricta (v1.2)

ID:

Scaffold2004_LTR_77

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

640

Start:

435  

End:

1074

Strand:

+

>Scaffold2004_LTR_77

CCAAGATTTTCGAGGAGGAACCAGAAGTCGAGGAGGTCatcatggagaAGCCAGACAAGGATAGGGAGCACGACATTCGTACTACGGAAATTCACACAGAGGAACCTGAGACTCGCATAAGGAAACAAGTGACACACAATCTCCCAAAGTATCAACCTAAAATCCCTTTTCCAGGAAGAATTAAGGGAAGAATAGCGGAGAGAATGAGGAACGCGTTCGAAGAACCAATGAAATCCGTAATCATCACCATGCTAATACTAAAAGCCTTAACGATGATTCCCAACGCTGGCATTCTTGACACACGAGTGCAGTGTCGTCATCCTCGATAAGAAGATTCCGAGAAAGCTAGATGACCCAGGCAGTTTCACTCTCTCTTGCATTCTCGGTCACATAACATTCGGGATATCTTTATGCGATCTTGGAGCTAGTGTGAATCTAATGCCCGTATCAATTCCATAAAAGTTGGGACTTACTCGATTCAAGGAGTGTAAAATGTCGCTGGTTCTCGCTGATCGCTCAGTAAAAACGCCTGTGGGATTACTTGAAGACATTCCAGTAATGATTGGTGAGTACCAAATACCAAGAGACTTTGTGGTACTCAAGATGGATCACGAGCCCATGGATCCACTTATCCTAGTGA

Boechera stricta (v1.2)

ID:

Scaffold20129_LTR_78

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

267

Start:

358367  

End:

358633

Strand:

-

>Scaffold20129_LTR_78

TATATAGTTTTTTAAACTATATATTATGTAAAAAATGTAGAGAAATTGGTCCAAAAGTCCAATAGAAATTTGGCCCAAAAAGAACATCTTTGTGGGCCTAAAGGCCTACATTCCCTGAGACCCGAGACCCGAGACCCGAGTCCGTCCCGACGGCGGCGGCGGTGCGTACGCGTGTGTTTTCATAACGGCCCATATCTCTCCTTCTCCATAGTGCTCCCTTAACCAAGTTAGTGAACTATGGTGTGGAAGCAACACTATTTATACTAG

Boechera stricta (v1.2)

ID:

Scaffold20129_LTR_79

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

161

Start:

361623  

End:

361783

Strand:

-

>Scaffold20129_LTR_79

CCCCCATAGATTCTAGGCTACCCCATATTCTTGCAATATTGCATTCATCATTTCTTTCAGAGTTCGATTTTTACGTTTTGCAACTCTGTTAGATTCTGTTGAATAAGGAGCGGTCGTCTGATGAATAATGCCTTTTTCTTGACAAAAAACAATAAACGGGC

Boechera stricta (v1.2)

ID:

Scaffold20129_LTR_80

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1312

Start:

362343  

End:

363654

Strand:

-

>Scaffold20129_LTR_80

TTGTCGGACTCAAAGTTAATGGCGAAACCATGCTTATTCATTGTAGTCCTGAAGATCAAGTTCTTCCTCATGTCTGGAACGTGTTttacattgttcAGAGTCAACTCCATTCCAGAAGTCATCTTGAGGACCACCTTTCCAGTGCCTTCGATCTTTGAATGAGTTACGTTACCCATCAGCAGATTTTTCTCAGATTTGCTCTTCTGGTAGGTACTGAACATGTTCCTTTCTTTGCAGATGTGAGTGGTGGCCTCGGTGTTATACCACCACTCCAATGGGTTTTCatcagccatcaCCACGTTAGCTTCTGTGATCACAGTACACAGGTCAGCTTCCGTCAGGTGGGCCTGATTCTGAGCCTTCAGTTTGTTGCGATATTCAGAAGACTTGTGGCCTGgtttaccacagTAGTTGCATTTTCCCACAAACTTTTTGTTGGGAGATGCTTGTACTTTCTTCTTAAAGCTGGTTGAAGCTTTAGGCGCAACTTTGTTAGGCACAACATGAGCTTTACCTTTTACCCTTAGGCATAACATGAGCTTTACTTTTACCCTTGTACTCAGCCACATTTGCATTATGACCTTGAACGGACTTAGCTTTGTCACGTTTCAATGACTCATTTTACAGCCTGGAGATCAAGTTCGCCAAagtcagaggctTTTGCTTGTAAGCAAGGTAGTATCAATTGTAGCTCATGAGCTTGTTCCATGATGGGTTTTGAATCCACCATTTTAAAGTTCAGAAAAGTCGTTGTAGCGaattgtccagaGCCTACATTGAAAATCTTGTACTTATTTTCCAAAGCATCCCAAAGGTACTTGGAAGTACTGACTTCACTGTAcacattgtacAGCTCGTCTACCAGGCGGTTAAGAACATGACCTTTGCAAAGGTAGTCCCCATGGATCCAAGCCTCGACACTTGCGAGAGCTAgggggtcggtgttatctcgaggcaatataggtttgacctcagtgagatatctcgacaagttcaaattgtggagaaagaaatgcatctttttctgccacgattTGAAATTTGACCCATCAAATTTTTCTGGTTGTAAGCCAGCAAATACTGTGCTCGGCACAAAAGGGACTTTAGGGGCCTCGGTTGATGCGTGTCCGAGTGGCTGACCGCTCCCAGGAAGGGGTGTCAATTCACTGGTTCTTTCAGCaccaccgtttgagctgccagCGATCTCAGTTGCGTTTGTCATTTTCTGTTCAAAAGATAGACACTTCAGTTAGTACTTAGATAGAGAATAACAAATATTAGCGTTTAAAATTTTAAATTGCTAAATCGCCAT