ID Class Order Superfamily Length Start End Strand View
Scaffold13129_LTR-Cassandra_41 RetrotransposonsLTRLTR-Cassandra157100202100358-
Scaffold13158_LTR-Cassandra_42 RetrotransposonsLTRLTR-Cassandra35311449561145308-
Scaffold13158_LTR-Cassandra_43 RetrotransposonsLTRLTR-Cassandra33915312721531610+
Scaffold13223_LTR-Cassandra_44 RetrotransposonsLTRLTR-Cassandra321437757-
Scaffold13223_LTR-Cassandra_45 RetrotransposonsLTRLTR-Cassandra105757861-
Scaffold13223_LTR-Cassandra_46 RetrotransposonsLTRLTR-Cassandra3148961209-
Scaffold13223_LTR-Cassandra_47 RetrotransposonsLTRLTR-Cassandra26212371498-
Scaffold13404_LTR-Cassandra_48 RetrotransposonsLTRLTR-Cassandra338139630139967-
Scaffold13404_LTR-Cassandra_49 RetrotransposonsLTRLTR-Cassandra113139969140081-
Scaffold13404_LTR-Cassandra_50 RetrotransposonsLTRLTR-Cassandra343264919265261-
Scaffold13404_LTR-Cassandra_51 RetrotransposonsLTRLTR-Cassandra108265263265370-
Scaffold13404_LTR-Cassandra_52 RetrotransposonsLTRLTR-Cassandra224265373265596-
Scaffold13404_LTR-Cassandra_53 RetrotransposonsLTRLTR-Cassandra340691261691600-
Scaffold13404_LTR-Cassandra_54 RetrotransposonsLTRLTR-Cassandra107691602691708-
Scaffold13404_LTR-Cassandra_55 RetrotransposonsLTRLTR-Cassandra294692402692695-
Scaffold13404_LTR-Cassandra_56 RetrotransposonsLTRLTR-Cassandra325780788781112-
Scaffold13671_LTR-Cassandra_57 RetrotransposonsLTRLTR-Cassandra325738584738908+
Scaffold14419_LTR-Cassandra_58 RetrotransposonsLTRLTR-Cassandra104188636188739-
Scaffold14419_LTR-Cassandra_59 RetrotransposonsLTRLTR-Cassandra304188747189050-
Scaffold14419_LTR-Cassandra_60 RetrotransposonsLTRLTR-Cassandra84189073189156-

< 3 4 5 6 7 > Total 14


Boechera stricta (v1.2)

ID:

Scaffold13129_LTR-Cassandra_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

157

Start:

100202  

End:

100358

Strand:

-

>Scaffold13129_LTR-Cassandra_41

GTCACACATCCTGAAAAGTGAAGTTATTCTACCTCAAACATGCTTAGATGTGAACTTTTCTTAGGAAAAGTTTTTAAAAAAAAAGTGCAATTCAATAATATATGTAGCCAAGTAACCTCTTCTTATGTACTACTATATTTCTTATTAATCGGGGTAT

Boechera stricta (v1.2)

ID:

Scaffold13158_LTR-Cassandra_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

353

Start:

1144956  

End:

1145308

Strand:

-

>Scaffold13158_LTR-Cassandra_42

TGTAACGCCCCAACCGCCCCCGTCCGTGAACCCACGACCACTTTGGCCTATGGGCCTACGGTCATCCGACGGCCGGTTCGTTACTTCTGGAGGCTTTAAAgacttgtttaCCGACCCTACAAATCACCACGTGATCTTTTCCCGTGTTTGGTCCTCACTCACACGGTACCGGAAATTACTTCCCGATAGGTCACCCGTCTTTAAATTGCTCCAGCTCAAGCACGCTTAACTCTGGAGTTCTCTCGAGATGGTCAACCGAAAAGATAAGTGCACtttggtgacatAGGTAGCCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCAAATTTCCCGATTCCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold13158_LTR-Cassandra_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

339

Start:

1531272  

End:

1531610

Strand:

+

>Scaffold13158_LTR-Cassandra_43

TGTAACACCCCATGTTGGAAATATGGTGGTGCATGAGGAGAGTTTAAAAAAATTGATTTAGCCACCTATGTTACCAAAGTGCATTTATCTTTTCGGTTAACCATCCCATGAGAACTCCAGAGTTAAACGTGCTTGAGTTGGAACAATTTAAGAATGAGTAATCTATCGGGAAGTGATTTCCGATGCCGTGTGAGTGAGGACAAAAcacagaaaaagATCACGTGGTGATTTGTAGGGTCGGTAAACAAGTCTAAAGCCTCCAAAAGTAATGCACCGATCGTCGGCCGAGGGTAGGACCCACGGGCTGGGCCCATAGACGGTGGCGGTCGGGGCGTTACA

Boechera stricta (v1.2)

ID:

Scaffold13223_LTR-Cassandra_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

321

Start:

437  

End:

757

Strand:

-

>Scaffold13223_LTR-Cassandra_44

TGTAATGCCCCAACCACCACAATCTGTGGGTCCTCACGTTCTCTTTCGTCCCGTGAACTCCACCTGTTAGTGCGCTATTCTAAGAGGCTTAAAACAATTGTTTATTGTCCCTATGCTATATTTTCCTGTATTTTTTTCTCACTTGCACGGTCCTGAAAGTCAGTTTTCACTATGTCACATATCCTTTCTTTACTCGAGTTCAAACTCACAAGTTTTTAAGGACAAATTACATAAAATACCAGTGCACTTTGGTAACATAATTAGCCAAATAATTTGTTTTAAGTCTCTCCACATGTTCCACCTTAAAATCGGGGAGTTGCA

Boechera stricta (v1.2)

ID:

Scaffold13223_LTR-Cassandra_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

105

Start:

757  

End:

861

Strand:

-

>Scaffold13223_LTR-Cassandra_45

ACTCACCCTGACTCAAAGAGCGCAATATCCTCGTTTCTTACCAAGTTCGTCACAGTGTGAGGCGACATGTCTCCACACTCGTCTGGTTTTGGCTCTGATACCACT

Boechera stricta (v1.2)

ID:

Scaffold13223_LTR-Cassandra_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

314

Start:

896  

End:

1209

Strand:

-

>Scaffold13223_LTR-Cassandra_46

CTCTCTCAGCCTATGGGCCCAACCCTCGTTCGACGTCTAGTCTGCTATTTTGTAAGGCTCGAAAGACCTATTAAACTACCCTGAAAATCAACACGAGATCTTTCCCCATGTTTTCTCCTCACTTGTACGGTACTCGAAATCAATTCCTAGTATCATCCAACCTCCATTACTCTTACTTCATACACGTTAAACTCTGGATGTTTGTTAAGACAAATTAAGAAAAAGATAAGTATACTTTGTCACATAGTTAACCAAATCAACTCTTTCAAACCTCTCCACATGCACCACCATATTTTAGAAAACAGGGTGCTGCA

Boechera stricta (v1.2)

ID:

Scaffold13223_LTR-Cassandra_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

262

Start:

1237  

End:

1498

Strand:

-

>Scaffold13223_LTR-Cassandra_47

GTGGACCTCCTTGTCCTCCCTCTCCTTATGGTCTTATCCTCTTATAACGGATGGTGCGCTAATCTAGAAGGCTTGAAAGAATTGTTTATTCTCCATACAAATCACCACACGATTTTCTCCGGACTTTTGTCCTCGCATGGTACAGGAAATCACTTCTTATTAGGTCAACCATCCTTCCGTTACTCCATTTCAACCTTGGTTTTAATCTTGAATTTTGTCAGGATGCATTACGGAAATGATAAGTGCAATTTGGTGACATTGG

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

338

Start:

139630  

End:

139967

Strand:

-

>Scaffold13404_LTR-Cassandra_48

TAAGGCCCCGACCGCCACCGTACATGGGCCCAGCCCGTGGGCCCCATCCTAAGCCGACGGTCGGTGCATTACTTCTGgaggctttaaaGACTTGTTTACCGATCCTACAAATCTTCACGTGATCTTTCCCCGTGTTTTGTCCTCACTCACACGGTACCGGAAATCACTTCCTGGTAGGTCACCCATCCTGAAATTGCTCCAGCTTAAACACGCTTAACTCTGGAGTTCTCTCAAAGTGTTGACCGAAAAGATAAGTGCACTTTGGTGACATAGGCGACCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCATATTCCCTACCTGAGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

139969  

End:

140081

Strand:

-

>Scaffold13404_LTR-Cassandra_49

TCACCCCTACTAACAGACCGCAACGTCCTCATTGCGCAGCCATACCGTCACCCCTTAACGGTGTGAGACCACCCACTTGTATCCACACTCGTCTGAGTTCGGCTCTAATACCA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

343

Start:

264919  

End:

265261

Strand:

-

>Scaffold13404_LTR-Cassandra_50

TGTAACGCCCTAACAGCCCCCGTCCGTGGTCCCATGCCCACTCATGCCCACTCTCGCCCATCGGCCACACGCTCATTTGACGGCCAGTTCGTTATTTCTGGAGGCTATAAAGACTTGTTTACCGACCCTACAAATCACCATGTGATCTTTCCCCGTGTTTTGTCCTTACTTATACGGTACCGGAAATCACTTTCCAATAGGTCACCCATCCTTAAACTGCTCTAGCTCAAGCACGCTTAACTCTGGATTTCTCGGTTGACCTACTTTGGTGACATAGGTAGATAATTCAATTATTTTAAACTCTCCTCATGCACCACCAAATTTCTAGATTACGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

108

Start:

265263  

End:

265370

Strand:

-

>Scaffold13404_LTR-Cassandra_51

TCACCCACACTAACAGATCGCAACGTCCTCGTTGCATACCAAGACAGTCACCCTCGATAGCATGAGCCCTCTTGACTCCACGTTTGTTTGGGTTTGGCTCTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

224

Start:

265373  

End:

265596

Strand:

-

>Scaffold13404_LTR-Cassandra_52

TGTAACGCCCCAACCTCCCCCGTCCATGGTCCCATGCCCACTCTCGCTCACGGGTCCCACGCTCATTCGACGGCTAGTTCGTTACTTCTAGAGGCTTTATAGACTTGTTTACCAATCCTACAAATCACCACGTGATTTTTTCCCGTATTTTGTCATCACTCACACGGTACCGGAAATCACTTTCCGATAGATTACCCATTCTTAAATTGCTCCAGCTCATGCAC

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

340

Start:

691261  

End:

691600

Strand:

-

>Scaffold13404_LTR-Cassandra_53

AATGTCCCAACCACCACCGTCCGTGGACTCTCACACCCTCTCTCGGCCTGTGGATTGTCTGATGACCAATGTGCTATTTTAGGAGGTTCCAAAAAATTATTTGCTATTCCTATAAATCACCACAAGATATTTTTTCATGTTTTGTCCTCGCTTAAATGCTACTAGAAATTACTATCTAGTAGGTCGCTCATCCTGAAATTACTCCAACTCAAACAATTGAGGAATTTTGTGAAAATATTTGACCGAAAAAATAAGTGCAATTTGATAATATATGTAGCCAAATCATATATCTTAAGCGCTCCTCATACACCACCATATTTCCAGAAATTGAGATATTACA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

107

Start:

691602  

End:

691708

Strand:

-

>Scaffold13404_LTR-Cassandra_54

TCATCCCAGTCACAAATCGCAAAGTCTTTGTTGCATACCAAGACCGTCACGTTCGATGGTGTGAACCCACATGTCTACACATTCGTCTGGGTTTGGCTCTAATACCA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

294

Start:

692402  

End:

692695

Strand:

-

>Scaffold13404_LTR-Cassandra_55

CATGTGCCCTCACACCAGTAGTGGGCGGTGTGCTACTCTCGAAGACTCAAAAGACTTATTTATAATCACCACTAGATCTTTTCCCATATTTTATCTTCATCCATATGGTACTAAGAATCACTTTCTGACATATCATCCATTATAAAAACGCTCAGTTGAAGCACGTTTAACTGTAGAATTCTGTTAGGATGATTGACGGAAAAGATAAGTCTACTTTAGTGACATATTTAACCAAATCTTTTCTCTTAAACTCTTCTCATGGACCTTCATATTTTCTGAAATCGAAATATTACA

Boechera stricta (v1.2)

ID:

Scaffold13404_LTR-Cassandra_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

780788  

End:

781112

Strand:

-

>Scaffold13404_LTR-Cassandra_56

TGTAACGCCCCGACCGCCACCGTCCATGGGCCCAACCCGTGGGCCCACTCTCGGCTGGCGGTCGGTGCATTATTTATGGAGGCTTTTAAGACTTGTTTACTGACCCTACAAATCACCACGTGATCTTTCTCCGtgttttgtccTCACTCACACGGTACCGGAAATCACTTTCCAGTAGGTCACCCATCCTGAAATTGCTCCAGCTCAACCACACTTAACTCTGGAGTTCTCTCAGAGTTAAGTGCACTTTGGTGACATAGGTGACCAAATCAATTCTTTTAAGCTCTCTTCATGCAACACCATATTCCCAACCTGAGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold13671_LTR-Cassandra_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

738584  

End:

738908

Strand:

+

>Scaffold13671_LTR-Cassandra_57

GAAATTTGGTGGTGCATGAGGAAAGCTTAAAAGAATTGATTTGGCTAcctatatcacCAAAGTGCACTTATCTTTTCGGTTATCCATCCCGAGAGAACTCCAGAGTTAAGCGTGCTTGAGCTGGAGCAATTTAAGGATGGGCGACCTATCGGAAAGTGATTTCTGATACCGTGTGATTGAGGACAAAACACGGGAAAAGATCACGtggtaatttgtAGGGTCGGTAAACAAGTCTTTAAAGCCTCTAGAAAGAACGAACCGGCCGTCGGATGAACGTGGACCCATGAACGAATGTAGGCGTGGGACCGGGAAGGGGGGGATGGGG

Boechera stricta (v1.2)

ID:

Scaffold14419_LTR-Cassandra_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

104

Start:

188636  

End:

188739

Strand:

-

>Scaffold14419_LTR-Cassandra_58

TCAGGATGCATTACGGAAATGATAAGTGCAATTTGGTGACATTGGTTGTCAAATTAATTCTTTTAAACCTACATGCATCACCATATTTCAGAAATCAAGGTGTT

Boechera stricta (v1.2)

ID:

Scaffold14419_LTR-Cassandra_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

304

Start:

188747  

End:

189050

Strand:

-

>Scaffold14419_LTR-Cassandra_59

GTAACGCCCCATCACCACTGTTTGTGGGCTCCTACGCCTTCTCTCAGACTGTGGACCCCACGACCAATGTGCTATATTGGAAGGCTCGATTTTACTTTCCCTACAAATAACTACAAGATACTTGTGTTTTGTTCTCACTCATACGATACTTAGATCACTTCCCAGTAGGTCACACACTCGTTTATTACTCCAGCTCAAACACACTTAGCTCAAAAGATCAGTGCACTTTCGTAACATTGATAGCCAAATCACTTCTTTTAAGCATCTTCATATGGGCTATTATATTTTCGTAATCGGGATGTTA

Boechera stricta (v1.2)

ID:

Scaffold14419_LTR-Cassandra_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

84

Start:

189073  

End:

189156

Strand:

-

>Scaffold14419_LTR-Cassandra_60

AACATCCTCGTTGCGTACCACGACTGTTATCCTCGACGATGTGAGTCTACATGTCTCCACGCACTCATTTGCATTTGGCTCTGA