ID Class Order Superfamily Length Start End Strand View
Scaffold18351_LTR-Cassandra_81 RetrotransposonsLTRLTR-Cassandra341293492293832+
Scaffold18351_LTR-Cassandra_82 RetrotransposonsLTRLTR-Cassandra353463074463426+
Scaffold18351_LTR-Cassandra_83 RetrotransposonsLTRLTR-Cassandra33915823671582705+
Scaffold18351_LTR-Cassandra_84 RetrotransposonsLTRLTR-Cassandra34120237132024053-
Scaffold18351_LTR-Cassandra_85 RetrotransposonsLTRLTR-Cassandra33624033232403658-
Scaffold18351_LTR-Cassandra_86 RetrotransposonsLTRLTR-Cassandra11024120442412153+
Scaffold18351_LTR-Cassandra_87 RetrotransposonsLTRLTR-Cassandra10324121552412257+
Scaffold18901_LTR-Cassandra_88 RetrotransposonsLTRLTR-Cassandra3346371864051-
Scaffold18901_LTR-Cassandra_89 RetrotransposonsLTRLTR-Cassandra876407164157-
Scaffold18901_LTR-Cassandra_90 RetrotransposonsLTRLTR-Cassandra3546416264515-
Scaffold19424_LTR-Cassandra_91 RetrotransposonsLTRLTR-Cassandra283552181552463-
Scaffold19424_LTR-Cassandra_92 RetrotransposonsLTRLTR-Cassandra261553421553681-
Scaffold19424_LTR-Cassandra_93 RetrotransposonsLTRLTR-Cassandra11525840032584117-
Scaffold19424_LTR-Cassandra_94 RetrotransposonsLTRLTR-Cassandra32428347332835056-
Scaffold19424_LTR-Cassandra_95 RetrotransposonsLTRLTR-Cassandra34141000944100434-
Scaffold19424_LTR-Cassandra_96 RetrotransposonsLTRLTR-Cassandra26150775515077811-
Scaffold19424_LTR-Cassandra_97 RetrotransposonsLTRLTR-Cassandra32768343686834694-
Scaffold20055_LTR-Cassandra_98 RetrotransposonsLTRLTR-Cassandra103226144226246+
Scaffold2021_LTR-Cassandra_99 RetrotransposonsLTRLTR-Cassandra352117188117539-
Scaffold2021_LTR-Cassandra_100 RetrotransposonsLTRLTR-Cassandra183501915502097-

< 5 6 7 8 9 > Total 14


Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

293492  

End:

293832

Strand:

+

>Scaffold18351_LTR-Cassandra_81

TGTAACACCCTAGGTTGGAAATATGGTGGTATATGATGAAAGCTTAAAAGAATTGATTTGGCTACCAATGTCATCAAAGTGCACTTATCCTTTTGATCAAACACCCTGGGAGAACACCAGAGTTAAGCGTGCTTGAGCTGGAGCAATTTCATGATAGGTGACCTCCCGGGAAGTGATTTTCGGTACCATATGAGTGAAGACAAAACACAGAAAAATATCACGTGGTAATTTGTAGGGTCGGTAAACAAATCTTTAAAGCCTCCAGAAGTAATGCATCGACCGTCAGCCGAGGATGGGGCCCACAGGCTGGGCCCATGAATAGTGGCGGTCGGGGCATTACA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

353

Start:

463074  

End:

463426

Strand:

+

>Scaffold18351_LTR-Cassandra_82

TATAACATCCCGATTTCAGAAAATATGGTGGTGTATGAGGAGAAATTAAAAAAATTGATTGTCTACTTATGTCACCAAAGTGCACTTATCTTTTCGGTCAAACATCCTGAAAGAACTCCATAGTTAAGCGTGCTAGAACTGGAACAGTTTTAAGATGGGTGACCTACCGGAGAGTGATTCCCAATACCGTATGAATGAGAACAAAACATTGGAAAAGATATTGTGGTGATATTTAGGATTGGTAAATAAATATTTATAGTCTCTCGTAAGGTGCACACCGACCGTTGGACGAGGATGGTGATAGCCCATATAGGACATGATGATCCACATCTAGTGGTTGTCAGGACATTACA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

339

Start:

1582367  

End:

1582705

Strand:

+

>Scaffold18351_LTR-Cassandra_83

TATAACACCCCATTTTCTGGAAATATGATGGTGCATGAGGAGAACTTAAAAGAATTGATTTGGCTACCTATGTCACCAAAAGATACTTATCTTTTCGGTCAAACATCTCAAGTTAAGCGTGTTTGAGCTGGAGCAATTTCAGGTGACCTATCAGGAAGTGATTTCCGGTACCGTATGAATGAGGACAAAACACGAGGAAAGATCACGTGGTGATTTGTAGGGTTGGTTAATAAGTCTTTAAAGCCTCCAAAAGTAGCAAACCGACCGTCATATGAGGGTGGAACCCATAGACCGAGAGAGTGTGTGGGGCCCACAGACGATGGCGGTCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

2023713  

End:

2024053

Strand:

-

>Scaffold18351_LTR-Cassandra_84

TGTAACGCTCCGACCGCCATCGTCCATAGGCCCAGCCCGTGGGCCCTCACCCTCGGCCGACGGTCGGTGCATtacttctagaGGTTTTAAAGACTTGTTTACCGACCTTACAAATCACCACATGATATTTTTCCTGTTTTGTCCTCACTCACACGGTACCGGAAATCACTTTCCGGTTGATCACCCATTCTGAAATTGCTCCAGCTCAAGCACGTTTAACTCTGGAGTTCTCTCATAGTGTTTGACCGAAAAGATATGTGCATTTTGGTGACATAGATGACCAAATCAATTCTTTTAACTTCTCCTCATGCACTACCATATTCCCAACCTGGAGTGTTATA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

336

Start:

2403323  

End:

2403658

Strand:

-

>Scaffold18351_LTR-Cassandra_85

TGTAACACTCCGACCGCCATTATCAGTGAGTTCCCATGTCTTCTCTCGGCCTGTGGGATCCACCTTCGCTAGATGACCGGTACGCTATATTCGGAGGTTTTAAAGACTTGTTTACCGACCGTATCACCAAAGTGCACTTATCTTTTCCTGTGTTTTTCCTTGCTCATACGGTACCAGAAATCACTTTTTGGTAGGTCACTCATCCTGAAATTGCTCTAGTTCAAGTACGCTTAACTCTGAAATTCTGACAAGATGTTTCACTGAAAAGATAAGTGCACTTTGGTGATATAGATAACCAAATCAAATTTTTTATATTCTCTTTATGCACCACCATAT

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

2412044  

End:

2412153

Strand:

+

>Scaffold18351_LTR-Cassandra_86

AGTGGTATCAAAACCGAGCTCAAACAAGTGTGGATTCAAATGTGTTCACACTGTTGGAGTGGCGATCTGGTTTGCAACAAGAACCTTTGTGATCTGTTAGTGTGGGTGAA

Boechera stricta (v1.2)

ID:

Scaffold18351_LTR-Cassandra_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

103

Start:

2412155  

End:

2412257

Strand:

+

>Scaffold18351_LTR-Cassandra_87

GTAATACCATGATATTTGAAACTACGGTGGTGCATAAGAAGAATTTAAAATAATTGAATTGGCTACTTATGTCATCAAAAATGCACTAATTTTTTCGGTCAAA

Boechera stricta (v1.2)

ID:

Scaffold18901_LTR-Cassandra_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

334

Start:

63718  

End:

64051

Strand:

-

>Scaffold18901_LTR-Cassandra_88

TATAATACCCTGACCTCCACCTTGCGTGGGCACCACGTCTTCTCTTAGTCCGTGGGTCTCATCCTCGTCTAACGGCCGGTTCGCAGCTTCCATAGGCTTTAATGACTTGTGTACTGACCCTATAAATCACCATGTGATTTTTCCCTTGTTTTTTCCTAACTCGCACGGTACCGGAAATCACTTTTCGATAGGTCATCAATCTTGAAATTGTTTCAGTCCAAGCACGCTTAAGTTTGGAGTTCTCTGAGGATGTTTGATCTAAAAGATAAGTGCACTTTAGTGATATTGTTATCCAAATCAATTCTTTTAAGTTCTCTCCATATACCACCATATT

Boechera stricta (v1.2)

ID:

Scaffold18901_LTR-Cassandra_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

87

Start:

64071  

End:

64157

Strand:

-

>Scaffold18901_LTR-Cassandra_89

CAATGTCCTCGTTGCGTACGAAGACCATCACCCAAACGATGTGAGCCCGCCTGACTCCACACTTGTTTGGTTTTGGCTGTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold18901_LTR-Cassandra_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

354

Start:

64162  

End:

64515

Strand:

-

>Scaffold18901_LTR-Cassandra_90

TGTAATGCCCGACCTCCACTTTCTGTGGGCCCTAAGCTCTCTCTCAGCGTGTGGGCCCCACCCTCGTCCGTTGGCCGGTTCGCTATTTCTGGAGGTTTTAAAGACTTGTAACCGACCCTTTAAATCACCACGTGATCTTTCCCCATGTATTTTCTTCACTCCTACGGTATCGGAAATCACATTCCGACAGGTCACCCATCCTAATTTGCTCCAGCCTAAGCACGCTTAACTCTGGAGTTATCTAAGGATGTTTGACCAAAAAAATTAAATGCATTTTGATGACATAGGTAGCTAAATCAATTCTTTTATGCTCTCCTCATACACCACCATATTTTCATATATCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

283

Start:

552181  

End:

552463

Strand:

-

>Scaffold19424_LTR-Cassandra_91

TGCAACGCCCCGACCGCCACCGTCCATGGGCCTAGCCCGTGGGCCCCACCCTCGGCCGACGGTCGGTGCATTACTCCTGGAGGCATTAAAGACATGTTTACCGACCCTACAAATCACTACGTGATCTTTTCTCGAGTTTTTTCCTCACTCACATGGTATCGGAAATCACTTCCCGGTAGGTCACCCATCCTGAAATTGCTCCAGCTCAAGCATGCTTAACTCTGGAGTTCTCTCAgggtgtttgaCCGAAAAGATAAGTGCACTTTGGTGACATAGGTGGTCA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

261

Start:

553421  

End:

553681

Strand:

-

>Scaffold19424_LTR-Cassandra_92

GAGGCTTTAAAGACCTGTTTACCAACCCTACAAATCACCACGTGATATTTCCCCTTGTTTTGTCCTCACTCACACGGTACCGGAAATCACTTCCCAGTAAGTCACCCATCCTGAAATTGCTCCAGCTCAAGCACGCTTAACTCTGAAGTTCTCTCAGGGTGTTTGATCGAAAAGATAAGTGCACTGTGGTGACATAGTTGGCCAAATCAATTCTTTTAACTCTCCTCATGCACCGCCATATTCTCAATCTGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

115

Start:

2584003  

End:

2584117

Strand:

-

>Scaffold19424_LTR-Cassandra_93

AGCTCAAAACACATTTAACTGTGAAGTTATCGTATGATTAGTTACAAAATTAGATAGATGTTTTTTTGGGTGAGATATGTAGTGAGATCGATTCTTTTTAACATTTTCACGTGCA

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

324

Start:

2834733  

End:

2835056

Strand:

-

>Scaffold19424_LTR-Cassandra_94

AACGCCCCGACCGCCACCGTCCATGGGTCCAGCCTGTGGGCCCCAACGGTCGGTGCATTACTTCTGAAGGCTTTAAAGACTTGTTTACCGCCTACAAATCACCACGTGATCTTTTCCCGTATTTTGTCCTCACTTACACGGTACCGAAAATCACTTCCCGGTAGGTCACCCATCCTGAAATTGCCCCAGCTCAAGTACGCTTAACTTTAGAGTTCTCTCAGGGTGTTTGACCGAAAAGATAAGTGCACTTTGGTGATATAGGTAGCCAAATGAATTTTTTTAAGCTCTCCTCATGCACCACCATATTCCAACCTGGGGTGTTAC

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

4100094  

End:

4100434

Strand:

-

>Scaffold19424_LTR-Cassandra_95

TGTAGCGATCCAACCATCGTCATCTGTGAACCATGCATGCTCTCTCGACTTGTGGGTTCTATCTCGTATGACAGCTAGTACGCTATTCCAAGAATTTTAAAAGATTTATTGACTATCTCTACATATCACCAACAAGATATTTTCTCGAGTTTTGTTTTCACTTACATAATACTTAAAATTACTTATTTGGTAATCTATTATGAAATCGCTCCAACAGGAAAATGTTTATATGTGAAGTTCTCTCATAATGACTTATACAAAAAAGTGTAATTTGCTGATATAGGTAAGTCAATCAATTTTAGTAAACTCACTTTGTACACCATCATATTCCATAAACCAGG

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

261

Start:

5077551  

End:

5077811

Strand:

-

>Scaffold19424_LTR-Cassandra_96

AAAGACTTGTTTACCAAACCTACAAATCACCACGTGATCTtttttcgtgttTTGTCCTCACTCACACGGTACCGGAAATCACTTTCCGATAAGTCACTCATCCTTAAATTGCTCCACCTCAAACACTCTTAACTCTGGAGTTGGAGTTCTCTCAGGATGGTCAACCGAAAAGATAAGTGCATTTTGGTGACATGGGTACCCAAATCAATTATTTTAAACTCTTCTCATGTACCATCAAATTTCCAGATTCCGGGATATTAC

Boechera stricta (v1.2)

ID:

Scaffold19424_LTR-Cassandra_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

327

Start:

6834368  

End:

6834694

Strand:

-

>Scaffold19424_LTR-Cassandra_97

TGTAACGCCCCACTGCCCCCACCCCACGCCCACTCTGCCCCATGGGGATCCACGATCGTCTGATGGCTGGTTTGTTACTTTTGGAAGTTTTAAAGATTTGTTTACCGACCTTACAAATCACCACGTGATCTTTTCCCGTGTTTTGTTCTCACTCACACGGTATCGAAAATCACTTCCCGATAGGTTATTCATCCTGAAATTGTTCCAACTCAAACACCTTTTAACTCTGGAATTCTCTTGGGATGGTTAACTGAAAAGATAAGTGCACTTTGATGACATAGGTAGCCAAATCAATTCTTTTAAACTCTCCTCGTGCACCACCAGATT

Boechera stricta (v1.2)

ID:

Scaffold20055_LTR-Cassandra_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

103

Start:

226144  

End:

226246

Strand:

+

>Scaffold20055_LTR-Cassandra_98

TGTAATATCCCAAATTATAGAAAATTAGTGGTGTGTGTTAAGAAAGTTAAAAGAATTATTGATTTGACTATATATCTCACTATTGTATACTTGTTTTTTCTGT

Boechera stricta (v1.2)

ID:

Scaffold2021_LTR-Cassandra_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

352

Start:

117188  

End:

117539

Strand:

-

>Scaffold2021_LTR-Cassandra_99

TGTAACGTCCCAACCGTCCCCGTCCGTGGTCTCATGTCCACTATGTCCCATGGGCCCCATGGTCATCCGACGGTCAGTTCGTTACTTCTGGAGGCTTTAAAGACTTGTTTACcgaccctacaAATCACCACGTGATCTTTTCCCGTGTTTTGTCCTCACTCACACGGTACCGAAATCACTTCCGATAGGTCACCCATCCTTAAATTGCTCCAGCTCAAACATGCTTGACTGTGGAGTTCTCTCGGGATGGTTAACCGAAAAGATAAGTGCACTTTGgtgacataggtAGCCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCAAATTTACAGATTCCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold2021_LTR-Cassandra_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

183

Start:

501915  

End:

502097

Strand:

-

>Scaffold2021_LTR-Cassandra_100

GTTCGATGGCTAGTACGCTATTTCGAAATATTCGAAAGATTTGTCCAACGACTCTACAGATCATTTTGAGATTTTTTTTCCATATATTGTTATCACTCAAATTATACTGAAAATCAGTTCTCAGTAAGTAATACATTCTTAAATATTTGTTCAAACTCAAGCTAGATTAATTTTGGAGTTCTC