ID Class Order Superfamily Length Start End Strand View
Scaffold12302_LTR-Cassandra_21 RetrotransposonsLTRLTR-Cassandra110209901210010+
Scaffold12302_LTR-Cassandra_22 RetrotransposonsLTRLTR-Cassandra275210010210284+
Scaffold12302_LTR-Cassandra_23 RetrotransposonsLTRLTR-Cassandra131281423281553+
Scaffold12302_LTR-Cassandra_24 RetrotransposonsLTRLTR-Cassandra161282879283039+
Scaffold12302_LTR-Cassandra_25 RetrotransposonsLTRLTR-Cassandra280343104343383+
Scaffold12302_LTR-Cassandra_26 RetrotransposonsLTRLTR-Cassandra113343409343521+
Scaffold12302_LTR-Cassandra_27 RetrotransposonsLTRLTR-Cassandra339343523343861+
Scaffold12302_LTR-Cassandra_28 RetrotransposonsLTRLTR-Cassandra341496826497166-
Scaffold12302_LTR-Cassandra_29 RetrotransposonsLTRLTR-Cassandra342589385589726-
Scaffold12302_LTR-Cassandra_30 RetrotransposonsLTRLTR-Cassandra113589728589840-
Scaffold12302_LTR-Cassandra_31 RetrotransposonsLTRLTR-Cassandra143589843589985-
Scaffold12302_LTR-Cassandra_32 RetrotransposonsLTRLTR-Cassandra258590607590864+
Scaffold12302_LTR-Cassandra_33 RetrotransposonsLTRLTR-Cassandra12317238841724006-
Scaffold12302_LTR-Cassandra_34 RetrotransposonsLTRLTR-Cassandra10917240081724116-
Scaffold12302_LTR-Cassandra_35 RetrotransposonsLTRLTR-Cassandra34517241171724461-
Scaffold12302_LTR-Cassandra_36 RetrotransposonsLTRLTR-Cassandra33821381612138498-
Scaffold124_LTR-Cassandra_37 RetrotransposonsLTRLTR-Cassandra234636981637214-
Scaffold12722_LTR-Cassandra_38 RetrotransposonsLTRLTR-Cassandra302275939276240+
Scaffold12722_LTR-Cassandra_39 RetrotransposonsLTRLTR-Cassandra323285834286156+
Scaffold12722_LTR-Cassandra_40 RetrotransposonsLTRLTR-Cassandra171360579360749-

< 2 3 4 5 6 > Total 14


Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

209901  

End:

210010

Strand:

+

>Scaffold12302_LTR-Cassandra_21

AGTGGTATCAGAGCAAACCCAGATGAGTGTGGAATTAAGTGAGTTCAAACCGTCTGAGTGATGGTCTTGGTAAGCAACGAGAACATTGCGCTATGTGAGTAGGGGTGAAT

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

275

Start:

210010  

End:

210284

Strand:

+

>Scaffold12302_LTR-Cassandra_22

TGTAACACCCAATTTATGAAATATGGTGATACACGAGGAGAGTTTTAAAAATTTGATTTGACTACATATGTCACCAAAGTGTCTTTATCTTTTCGGTCAAACATCTAATCAGTTTAGAGTTAAGTGTGTTGTGCTGGAGCAAATTCAGGATGGGTGACTTACCGGGAAGTGATTTCTAGCACCGTGTGAGTGAGAACAAAACATGAGGAAAGATCCCATGGTGATTTTTAGGATCAGTAAACAATTTTTCGACCCTCTGGAAGTAGCGCATTGAC

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

131

Start:

281423  

End:

281553

Strand:

+

>Scaffold12302_LTR-Cassandra_23

TGATAATTTGTAGGATCGGTAAACAACTCTTTCGAGTCTTCCAAAATAGCGCATCGACAATCAAACGAGGGTGAATTCATGAACAGTGAGAGGGTGTGAAACCCACATATGATGGCGGTCGGGATGTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

161

Start:

282879  

End:

283039

Strand:

+

>Scaffold12302_LTR-Cassandra_24

GAGTAGTAAAAAACATGGGAAAATTTTTAATGATGATTTGTAGGATCGGTAAACAACTCTTTCGAATCTCTAAAAATAGCACATCGATAGTCAAACGAGGGTGGGTTCATGAACAGAAAAATGGTGTGGAACCCGCATACGATGGCGGTTAGGGCATTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

280

Start:

343104  

End:

343383

Strand:

+

>Scaffold12302_LTR-Cassandra_25

TGTAACACCCCAGGTTGGGAATATGGTGGTACATGAGGAGAGCTTAAAAGAATTGATTTGGCCATCTATGTCACCAAAGTGCACTTATCATTTCAGTCAAATACCTTGAGAGAACTTCAGAATTAAGCGTGCCTGAGCTACCGGGAAGTGATTTCCGGTACTGTGTGAGTGAGGACAAAACACGGGGAAAGATCacgtggtgattTGTAGGGTCGGTAAACAAGTCTTTAAAACCTCCAAAAGTAATGTACCGACCGTCGACCAAGGGTGGGGCCCATGG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

343409  

End:

343521

Strand:

+

>Scaffold12302_LTR-Cassandra_26

TGGTGTAAGAGCGGAACCCAGACGAGTGTGGAGACAAGtgggtggtctCACACCGTTAGGGGGTGACGGTCTGGCTGCGCAACGAGGACGTTGCGGTATGTTAGTTGGGGTGA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

339

Start:

343523  

End:

343861

Strand:

+

>Scaffold12302_LTR-Cassandra_27

TGTAACACCCCAGGTTGGGAATATGGTGGTGCATGAGGAGAGTTTAAAAGAATTGATTTGGCCACCTATgtcaccaaagtgcacttaTCTTTTCGGTCAAACACCCTGAGAGAACTCCAGAGTTAAGCGTGCTTGAGGTGGAGTAATTTCAGGATGGGTGCCCTACCGGGAAGTGATATCCGGTACCGTCTGACTGAGGACAAAACACAGGAAAGGATCACGTGGTGATTTGTAGGGTCTGTAAACAAGTCTTAAAGCCTCAGAAGTAATGCACCGACCGTCGGCCGAGGGAAGGGCCCAAGGGCTGGGCCCATGGAAGGTGGCGGTCGGGGCCTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

496826  

End:

497166

Strand:

-

>Scaffold12302_LTR-Cassandra_28

TGTAATGCCCCGACCGCCACCTTCAATTGGCTCAGCCCGTGGGCCCCACCCTCGGCCGACGGTCGGTGCATTACTTCTGGAGGCTTTAAAGACTTGTTTACCgatcctacaaATCACCACGTGATCTTTCCCCGTGTTTTGTCCTCACTCACACGGTACCGAAAATCACTTCCTGATAGGTCACCCATCCTTAAATTGCTCCAACTCAAGCACCCTTAACTCTGGAGTTATCTCGGGATGGTTAACCAAAAAGTTAAGTGCACTTTGGTGACATAGGTGGCCAAATCAATTATTTTAAACTCTCCTCATGCACCACAATATTACCAATCTGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

342

Start:

589385  

End:

589726

Strand:

-

>Scaffold12302_LTR-Cassandra_29

TGTTACGCCCCGACCGCCACCGTCCATGAGTCCAGCCCATGGGCCCCACTCTTAGCCGACAGTTCGGTGCATTATTTCTAGAGGCTTTAAGGACTTGTTTACCGACCCTACAAATCACCACGTGATCTTTTTCCGTATTTTGTCCTCACTCACACGGTACCGGAATCACTTTCCGGTAGGTCACCCATCCTGAAATTGCTCCAGCTCAAGCACGCTTAACTCTGGAGTTCTCTCAAGGTGTTTGACCGAAAATATAAGTGCACTTTGGTGACATAGATGGTCAAATCAATTTTTTTTAAGCTCTCTTCATGCACCACCATATTCCCAACCTAGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

589728  

End:

589840

Strand:

-

>Scaffold12302_LTR-Cassandra_30

TCACCCCCACTAAcagaccgcaacgtcctcgttgcgcaggcagaccgtcaccccctaacggtgtgagaccacCCACTTGTCTCCACACTCGTCTGGGTTCGGCTCTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

143

Start:

589843  

End:

589985

Strand:

-

>Scaffold12302_LTR-Cassandra_31

TGTAACGCCCCGACCGCCACCATCCATGGGCCCATCCCGTGGGCTCAACCCTCGGTCGACGGTCGGTGCATTACTTTTGGAGGTTTTAAAGACTTGTTTACTGACCCTGCAAATCACCACGTGATCTTTTCCCGTATTTTGTC

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

258

Start:

590607  

End:

590864

Strand:

+

>Scaffold12302_LTR-Cassandra_32

GGTGCATGAGAAGAACTTAAAAGAATTGATTTGGCtacctatgtcaCCAAAGTGCACTTATCTTTTTGGTCAAATACCCTGAGAGAACTCCAGAGTTAAGCGTGCTTGTGCTGGAGCAATTTCAGGATGGATGACCTACCGGGAAGTGATTCCGGTACCGTGTGAGTGAGGACAAAATACGGGGAAAGATCACGTGGTGatttgtagggTCGGTAAACAAGTCTTTAAAAGCTTCAGAAGTAATGCACCGACCGTCGG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

123

Start:

1723884  

End:

1724006

Strand:

-

>Scaffold12302_LTR-Cassandra_33

TTAACTCTGGATTTCTCTTAGGATGTTTGATCGAAAAGTTAAATGCATTTTGGTGACATAGGTAGCCAAATCAATTAAACTCTCTTTATGCACCACCATATTTTCAGATATCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

109

Start:

1724008  

End:

1724116

Strand:

-

>Scaffold12302_LTR-Cassandra_34

TCATCCCCACTAACAGATCGCAACATCCTCTTGCGTACCAAGACTGTCACCTCCGACGATGTAAACCCACTTGACTCCACACTCGTTTGGGTTTGGCTATGATATTATT

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

345

Start:

1724117  

End:

1724461

Strand:

-

>Scaffold12302_LTR-Cassandra_35

TGTAACGCCTTGACCACCACTGTTCGTGCCCCCCCCCCCcccccccccgcCCTCTTTCAGCCTATGGACCCAACTCTCGTCTTATGGTCAATATGCTACTTCCAGAGGTTTTAAATATTTTTTTTACCGACCCTACAGATCACCACGTGATCTTTTTGGAACCATAAATCATTTTCCGACAGGCAACCATCCTAAAATTGTTTCAGCTCAAGCACGCTTAACTTTGAAGTTCTCTCAAAATGTCTGACTGAAAAAATAAATGCATTTTGGTGACATAAGTAGTTGAATCAATTATTTTAACCTTTGTTCATACACCACCATATTTCCAGATATTGGGGTATTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

338

Start:

2138161  

End:

2138498

Strand:

-

>Scaffold12302_LTR-Cassandra_36

CCCCCATCCGTGGACCCACGCCCACTCTGGCCCATGGGCCCCACGCTCATCCGACGGTCGGTTTGTTACTTCTGGAGGCTTTAAAGACTTGTTTAccgaccctacaAATCACCACGTGATCTTTTCCCATGTTTTGTCCTCGCTCACACGGTACCGGAAATCATTTTTCTATAAGTCACCCATCCTTAAATTGCTCCAACTCAAGCACGCTTAACTCTGGAGTTCTCTCgggatggtcaaCCGAAAAGATAAGTGCACTTTGGTGACATATGTAGCCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCAAATTTTCAGATTCCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold124_LTR-Cassandra_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

234

Start:

636981  

End:

637214

Strand:

-

>Scaffold124_LTR-Cassandra_37

TACAAAACAACACGACATATTTTACTGTATTTTGTCCTCAATCACACAGTAGTGGAAATCATCTTCTAGTAGATCATCCGTTCTAAAGATATTTCAGTTTAAACACACTTAACTCTGGAATTTTGTGAAGACGTGCTACGAAAAATATATGTGCATTTTGGTGATACAGGTAACCAAATCAATTCTTTTAAAAAATTTTGATGTACCACCATATTTCCTAAAATTAGGGTATTA

Boechera stricta (v1.2)

ID:

Scaffold12722_LTR-Cassandra_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

302

Start:

275939  

End:

276240

Strand:

+

>Scaffold12722_LTR-Cassandra_38

TGTAACACCATGTAATCTAGAAATTTGGTGGTGCATGAGAAGAGTTTAAAAGAATTGATTTGGTCACCTATGTCATCAAAGTGCACTTATCTTTTTCGGTTGACCATCCCAAGAGAACTCAAGAATTAAGCGTGCTTGAGCTGGAGAAATTTAAGATGAGTTACCTATAAGTGAGGACAAAATACGGAAAAAGATCACGTGGTGATTTGTAAGGTTGGTAAACAAGTCTTTAAAGCCTCCAAAATTAACAAACCGACCGTCGGATGAGCGTGGAGCCCATGGGCCAGAGTGGACGTGGGACC

Boechera stricta (v1.2)

ID:

Scaffold12722_LTR-Cassandra_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

323

Start:

285834  

End:

286156

Strand:

+

>Scaffold12722_LTR-Cassandra_39

TGTAACACCATGTAATCTAGAAATTTGGTGGTGCATGAGGAGAGCTTAAAGTAATTGATTTGGCCACCTATGTCACCAAAATGCACTTATCTTTTCGGTTGACCATCCCGAGATAATTCTAGAGTAAAGCGTGCTTGAGTTAGAGCAATTTAAAATGGGTGATCTATCGAGAAGTGATTTCTGGTACCGTGTGAGTGAGGACAAAACCCGGAAAAAGATCAGGTGGTGATTTGTAGGGTTAGTAAACAAGTCTTTAATGCCCCCAGAAGTAACGAACCAACCGTCGGATGAGTATGTGTGGTTCTAATGAGGGCGGTTGGGGC

Boechera stricta (v1.2)

ID:

Scaffold12722_LTR-Cassandra_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

171

Start:

360579  

End:

360749

Strand:

-

>Scaffold12722_LTR-Cassandra_40

CTCACTTACATAGTACAGCAAACCACTTCATAATAGGTCATTTATCCTTAAGTTGATCTATCCTAAGGAGATTTAAGTATGGAGTTCTCTATAAGTGAGTTAAAGAAAATATAAGTGCAACTGGTATTATTGACAGTCAAATCAATAATTTTAAATATCTTCACACACTAC