ID Class Order Superfamily Length Start End Strand View
Chr1_LTR-Cassandra_21 RetrotransposonsLTRLTR-Cassandra1061315005213150157-
Chr1_LTR-Cassandra_22 RetrotransposonsLTRLTR-Cassandra3521315016313150514-
Chr1_LTR-Cassandra_23 RetrotransposonsLTRLTR-Cassandra3591335525213355610-
Chr1_LTR-Cassandra_24 RetrotransposonsLTRLTR-Cassandra1361349321213493347-
Chr1_LTR-Cassandra_25 RetrotransposonsLTRLTR-Cassandra3551389416713894521+
Chr1_LTR-Cassandra_26 RetrotransposonsLTRLTR-Cassandra1121389452213894633+
Chr1_LTR-Cassandra_27 RetrotransposonsLTRLTR-Cassandra3361389463413894969+
Chr1_LTR-Cassandra_28 RetrotransposonsLTRLTR-Cassandra1321400670114006832-
Chr1_LTR-Cassandra_29 RetrotransposonsLTRLTR-Cassandra3221415294014153261-
Chr1_LTR-Cassandra_30 RetrotransposonsLTRLTR-Cassandra1141592341415923527-
Chr1_LTR-Cassandra_31 RetrotransposonsLTRLTR-Cassandra3401614791816148257+
Chr1_LTR-Cassandra_32 RetrotransposonsLTRLTR-Cassandra3481666621016666557+
Chr1_LTR-Cassandra_33 RetrotransposonsLTRLTR-Cassandra1091666656016666668+
Chr1_LTR-Cassandra_34 RetrotransposonsLTRLTR-Cassandra861666669616666781+
Chr1_LTR-Cassandra_35 RetrotransposonsLTRLTR-Cassandra851668525816685342-
Chr1_LTR-Cassandra_36 RetrotransposonsLTRLTR-Cassandra1101668534316685452-
Chr1_LTR-Cassandra_37 RetrotransposonsLTRLTR-Cassandra3571668546716685823-
Chr1_LTR-Cassandra_38 RetrotransposonsLTRLTR-Cassandra1071668582416685930-
Chr1_LTR-Cassandra_39 RetrotransposonsLTRLTR-Cassandra3301668593816686267-
Chr1_LTR-Cassandra_40 RetrotransposonsLTRLTR-Cassandra2891674201216742300-

< 2 3 4 5 6 > Total 9


Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

106

Start:

13150052  

End:

13150157

Strand:

-

>Chr1_LTR-Cassandra_21

ATTCACCCTCACTAACAAATCATAACGTCTTCGTTGCAAACCAAGACCGTCACCCCAATGATGTGAGCTTTCTTGACTTCATACACGTATGAATTCGGCTCCGATA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

352

Start:

13150163  

End:

13150514

Strand:

-

>Chr1_LTR-Cassandra_22

TGTAACGCCCTAACCGCCCATACCAGTGGGCCCTACATCTTCTCTCGGACCCATGGACCCACCCCTGTCCGATGGTACATTGTTACATTCGAAATATTTTAAAGAGTTGTTTACCGACCCTACAAATCACCAGATGATCTTTCTTAATGCTTTCTCTTCATTCGCATAGTTTCGACAATCATTTTTTGGAAGGTCACTATTTTAAAGTTACTCCAGCCCAAATATGCTTAACAGTGGAGTTCTCTCAGCATATTTAACCAAAGATAAATATACTTTGGTGACATAGATGACCAAATATTTTCTTTTACAATTACCGCATCCACCACCATATTTTAAAAAACGGAATATTATA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

13355252  

End:

13355610

Strand:

-

>Chr1_LTR-Cassandra_23

TGTAACGTTCTGACCGCCCTTACCAGTGGGCTCCATTTCCTCTCTAGGGCCCATGAACCCACATATGTCCGACTGTTGGTCTGCTATTTCAGGAAAACTTTAAAGACTTATTTACCAATCCTACAAATCACCACATGATCTTTCCTTATGTTTTGTTTTCACTCACACAGTTCCGACAATCACTTTCCAGAAGGTTACTCATCCTGAAACCTTTCTAGCTCAAGCATGCTTAACTGTAGAGTTCTCTCAAGATGTTTGACCCAAAAGATAAACTGCACTTTGGTGACATAAGTGGCCAAATCAATTCTTTTAAAACCCTTATGCATGCACCACCATATTCCTGAAACTGGAGTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

136

Start:

13493212  

End:

13493347

Strand:

-

>Chr1_LTR-Cassandra_24

CAAGCTCACTTAACTATGGAGTTCTCTTAGGACGTTTGACCGAAAAGGTAAGTGCACTTTAGTGACATAGGTAGCCAATCAATTCTTTTAAACCTTTCTGCATGCATCACCATATTCCTGAAACTGGGGTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

355

Start:

13894167  

End:

13894521

Strand:

+

>Chr1_LTR-Cassandra_25

TGTAACATCCTTGTTTCAGGCATATGAAGGTGCATGCAGAGAGGTTTAAAATAACTGAATTGACCACCTATGTCACCAAAGTGCACTTATATTTTCGGTCACACGTCTTGAAAAAACTCCACAATTAAGCGTGCTTGGGCTATAATAGTTTCAAGATAGGTAACCTTCCGGGAACTAATTGGTGGAACCATGCGAGTGAGGACAAAGCATGGAGAAAGGTCATATGGTGATTTGTAGGGTCGGTAACAAGTCTTTAAAGCCTCATGGACGTGGCCCACTGACCGACAAACAAGGGTGGACCCAAGCGCACGAGAGAAGTTGTGGGCCCACTGGTAGGGGCGGTGAGGGCGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

13894522  

End:

13894633

Strand:

+

>Chr1_LTR-Cassandra_26

AGTGGTAGTAGATCCAAACCCATACGAGTGCGGAGTCAACAGGGCTCACACCGTTGGGGCTTATGGTCTTGGTGCGCAACGAGGACGCTGTGATCTGTTAGTGGGGGTGAAT

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

336

Start:

13894634  

End:

13894969

Strand:

+

>Chr1_LTR-Cassandra_27

TGTAACATCCCGATTTCAAGAATATGGTGGCGCATGCGGAGAGGTGTAAAAGAATTGATTTGGCTACCTATGTCACAAAAATGCAAGTATCATTTTCGGTCAAACATCCTGAGAGAACTCCAAAGTTAAGCATGCTTAGGCTAGATAAGTTTCAGGATGGGCGACAAACTATGCGAGTGAGGAAAAAGCATGGAAAAAGGTCATGTGGTTATTTGTAAGGTGAGCAACAAGTCTTTAAAACCTCTAAATGTGGTGTACTGACTGTCGAACAAAGGTGGACCCATAGGCCAGAGAGAGGACGTGAGGCCCACTAGTAAGGATTGTTTGGGCGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

132

Start:

14006701  

End:

14006832

Strand:

-

>Chr1_LTR-Cassandra_28

ACAGTTAACTGTAGAGTTTTCTCAGGATGTTTGATCGAAAAGATAAGTGAACTTATATGATATAGGTGGCCAAATCAATTCTTTCAAATCTATCTACATGCATTATTATATTCCTAAAACCGGAATGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

322

Start:

14152940  

End:

14153261

Strand:

-

>Chr1_LTR-Cassandra_29

CACGCCTCTTTCGGGCTTTTGGACCACATTTTTGTCCGACGGTCCGTCTACTACATACATGAGGCTTCAAATATTTCCCTACCAATCCTACAAATCACCACATGATTTTTTTCTGTGTTTTGTCCTCGTTCATACGGTTTCGATAATCATTTCCCGAAAGGACATCCATCCTGAAATTATTTTCGATCAAACTTCCTTAACTGTAGAGTTCTCTCGGAACGTTTGACCGAAAAAAAATTACATTTTTGTGACATAAATAAGCAAATCAGTTATTTTAAACTTCTCTACATGTACCACCATATTTCCAAAATCCGGTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

114

Start:

15923414  

End:

15923527

Strand:

-

>Chr1_LTR-Cassandra_30

TAGAGTTCTAATCAAATGTTTAATTCAAAAGATAAATGCACTTTGGTAACATATGTAGCAAATAATTTATCTTAGATTTTTTGACATGCATCATCACATTCTCAAAATCGAGAT

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

340

Start:

16147918  

End:

16148257

Strand:

+

>Chr1_LTR-Cassandra_31

CTCCGATTTCAAAAATATGGTGGTGCATGCTGAGAGATTTAAAAGAATTGATTTGGCCACCAATATCACCAAATTGCACTTATCTTTTCAGTTAACTATCCTGAGAGAAGTCCACAGTTAAGGATGCTTGGACTGCAATAATTTTAGGATGGGTGACCTTCAATGAAGTGATTATCGGAACCATGCTTATGAGAACAAAGCATGTGAAAAGATCATGTGGTGATTTGTAGGATCGGTAAACAAGTCTTCGTGCCTCTCGGATCGATCGTTAGACAAGGGTGGGCCCAAAGGGCCGAGAGAGGACGTGGGTCCCACTGTTAAGGACAGCCGAAATGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

348

Start:

16666210  

End:

16666557

Strand:

+

>Chr1_LTR-Cassandra_32

TATAACACCCCGATTTTAAGAATATGTTGGTGCATGTAGAGAGGTTTAAAAGAATTGATTTGGGCACCTATATCATCAAAGTGCACTAATCTTTTTGGTCAAACGTCCTAACAAAACTCCACAATTAAGAGTGTCTAGGCTGGAGTAGTTTCAGGATGGGTGACCTTCCGAGAAGTGATCGTCGGAACCATGCGAGTGAGGATAAAGCATGGGGAAAGATCATGTGGTGATTTGTAGGGTCGGTAACAAATCTTTAAAGCTTCCTAGACGTGGTGCACCGACTGTCGGACAAAGGTGGACCCGAGAGAGGACGTGGGGCCCACTACTAAAGGCGGTCACGGCATTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

109

Start:

16666560  

End:

16666668

Strand:

+

>Chr1_LTR-Cassandra_33

TGATATCAGAGCCGAACCCAGATGAGTGTAGAGTCAAGAAGGCTCGCACCAACGGGAGTTACGATCTTGGTGCGCAACGAGGACGTTGCGATCTGCTAGTGGGGTGAAT

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

86

Start:

16666696  

End:

16666781

Strand:

+

>Chr1_LTR-Cassandra_34

TGGCGCACAGACCGTCGGACTGGGGTGGGCCCATGTGCCCGAGAGATGTCGTGGAACCCACTGGTAAAAGCGGTCGGGGCGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

85

Start:

16685258  

End:

16685342

Strand:

-

>Chr1_LTR-Cassandra_35

TGAACCTTGATGATATAGATGGTCAAATCAATTCCTTTAAACCTCTATGTATACAGTAACATATTCATAAAATTAGGTTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

16685343  

End:

16685452

Strand:

-

>Chr1_LTR-Cassandra_36

ATTCACTCATACTAACAGATCGCAACGTCCTCGTTGTGCACCAACACCGTCACCCCCAAAGGTGTGAACCTTCTTCACTCCACACTCATCTAGGTTCGGCTCTGATACTA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

357

Start:

16685467  

End:

16685823

Strand:

-

>Chr1_LTR-Cassandra_37

TGTAACAACCCAACCGCCCTTACCAGTGAGCCCCACATCCTCTCTCGGGCCCATAGGCCCACCCCTATCCGACGATCGGTGAGTCACGTCCGGAAAGCTTTAAAGACTTGTTACCGACCCTACAAATCACCACATGATCTTTCACCATGTTTTGTCTTCACTTGCATCGTTCCGACAATCATTTTCCGGAAGGTCACCCATCCGAAAAATTACTCCAACCCAAGAACGCTTAACTTTGGAGTTCTCTCACGACCTTTGACTAAAAAGATAATTGCACTTTGGTGACATAGGTGGCCAAATTATTTATTTTAAACCTCTTTGCATAGACTACCATATTCTTGAAATCTGTGTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

107

Start:

16685824  

End:

16685930

Strand:

-

>Chr1_LTR-Cassandra_38

ATTCACCCTCAATAATAGATCGCAACGAGTTGCACACCAAGATCGTTACCCCCAATGGTGCAATCTTTCTTGACTCCAACACACATCTGAGTTTGGCTCTGATACCA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

330

Start:

16685938  

End:

16686267

Strand:

-

>Chr1_LTR-Cassandra_39

CGCCCTAACCAGTGGGCCCCACATCCTCTTTCGGGCCCATGGGTCTACCCATGTCCGACTAAGTGTGCCACGTTTGGGAGGCTTTAAAGATTTGTTACTGATCCTATAAATCACCACATGATGCTTTGTTCTCACTCGCATGGTTCCGACAATCACATCCCGGAAGGTCACCTATCGTGAAACTACTCTAGCCCAAGCACGCTTAACTATGGAGTTCTCTCAGGACATTTGTCCGAAAAGATAAGTGCAATTTGGTTACAAAGGTAGCCAAATTAATTATTTTAAACCTCTTCGCATACACTAGCAGATTCCTGAAATCAATGTGTTACA

Arabidopsis thaliana (TAIR 10)

ID:

Chr1_LTR-Cassandra_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

289

Start:

16742012  

End:

16742300

Strand:

-

>Chr1_LTR-Cassandra_40

TGTAACGCTACGAACGTACCTGCCAGCGGTCCCCACATCCTCTCTCTGCGTCCAGAAGGTTCTAAAGACTTGTTTACACGCCCTACAAATCCCCACATGATATTTCCTAGTGTTTTGTCCTCACTTACACGATTCCAACAATCACTTTCCATAAGGTCACACATCCTGAGACTTTTCCACCTCAATGACGCTTAATTGTGGAGTTCTCTCAGGACGTTTGACCGAAAATATAAGTCTCTTTGGTGATATTGATGGCAAAATCAATTCTTTTAAACCTCTCTGCATGGAC