ID Class Order Superfamily Length Start End Strand View
scaffold_1_LTR-Cassandra_61 RetrotransposonsLTRLTR-Cassandra3572369425123694607+
scaffold_1_LTR-Cassandra_62 RetrotransposonsLTRLTR-Cassandra1432379725523797397-
scaffold_1_LTR-Cassandra_63 RetrotransposonsLTRLTR-Cassandra1112396067523960785-
scaffold_1_LTR-Cassandra_64 RetrotransposonsLTRLTR-Cassandra3332398218623982518-
scaffold_1_LTR-Cassandra_65 RetrotransposonsLTRLTR-Cassandra1782403949324039670+
scaffold_1_LTR-Cassandra_66 RetrotransposonsLTRLTR-Cassandra3462403966024040005+
scaffold_1_LTR-Cassandra_67 RetrotransposonsLTRLTR-Cassandra1112404000624040116+
scaffold_1_LTR-Cassandra_68 RetrotransposonsLTRLTR-Cassandra3252404011724040441+
scaffold_1_LTR-Cassandra_69 RetrotransposonsLTRLTR-Cassandra1842404437724044560-
scaffold_1_LTR-Cassandra_70 RetrotransposonsLTRLTR-Cassandra3652408184124082205+
scaffold_1_LTR-Cassandra_71 RetrotransposonsLTRLTR-Cassandra1112408220624082316+
scaffold_1_LTR-Cassandra_72 RetrotransposonsLTRLTR-Cassandra3262408231724082642+
scaffold_1_LTR-Cassandra_73 RetrotransposonsLTRLTR-Cassandra3372423824024238576+
scaffold_1_LTR-Cassandra_74 RetrotransposonsLTRLTR-Cassandra2282521560925215836+
scaffold_1_LTR-Cassandra_75 RetrotransposonsLTRLTR-Cassandra1022522569625225797+
scaffold_1_LTR-Cassandra_76 RetrotransposonsLTRLTR-Cassandra2542522701425227267+
scaffold_1_LTR-Cassandra_77 RetrotransposonsLTRLTR-Cassandra1592522805725228215+
scaffold_1_LTR-Cassandra_78 RetrotransposonsLTRLTR-Cassandra3442523086425231207+
scaffold_1_LTR-Cassandra_79 RetrotransposonsLTRLTR-Cassandra3442523341025233753+
scaffold_1_LTR-Cassandra_80 RetrotransposonsLTRLTR-Cassandra3442523621025236553+

< 4 5 6 7 8 > Total 36


Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_61

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

357

Start:

23694251  

End:

23694607

Strand:

+

>scaffold_1_LTR-Cassandra_61

TATAACACCCTGGTTTCAGGAATATGGTGGTGCATGCGGAAAGGTTTAAAAGAATTGATTTGGCCACCTATGTCACCAAAGTGCACTTATCTTTTCGGTCAACTGTCCTGAAAGAATTCCACAGTTAAGCGTGCTTAGGCTGGAGTAGTTTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACTGTGTGAGTGAGGACAAAGCACAGGGAAAGATCATGTGGTGATTTGTAGGGTCGGTAAACAAGTCTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_62

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

143

Start:

23797255  

End:

23797397

Strand:

-

>scaffold_1_LTR-Cassandra_62

TATAACGCTCCAACCGTCCCTACTAGTGGGCCACACGTCCTCTCTCGGGCCCATGGGCCCACCCCTGTCCGACGACCGGTCCGTTACGTCCGGGAAGATTTAAAGACTTGTTTACCGACCCTACAAATCACCACATGATCTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_63

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

23960675  

End:

23960785

Strand:

-

>scaffold_1_LTR-Cassandra_63

TGTAACGCCCCGACCACCCTATCAGTGAACATCCACATCCTCTCTCGGGCTTGTGGGCCCACGTCTGTCCGACAGTCGGTCCGCTATGTCCGGTAGGCTTAATGACTTGTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_64

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

333

Start:

23982186  

End:

23982518

Strand:

-

>scaffold_1_LTR-Cassandra_64

TGTAACGTCCCGACCGCTCCTACCAGTGAGCACACACGTCCTCTCTCGGGCCCCTCGGTCCAACTTCTATCTGACGGTCGGTCCGTTACGTGCGAGAGGCTTTAAAAACTTGTTTACCGACCCTATAAATCACCACATGATTTTTTCCGTGTTTTGATCTCACTCATACGGTTCCGATAATCACTTCTCGGAAGGTCACCCATCCTGAAGCTTTTTCAGCACGCTTAACTGTGGAGTTTTCTCATGACAGTTGAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_65

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

178

Start:

24039493  

End:

24039670

Strand:

+

>scaffold_1_LTR-Cassandra_65

TGTAACACCTCCGGTTTCAGGAAGTATGGTAGTGCATGCAGAGAGGTTTAAAAGAATTTATTTGACCACCTATGTCACCAAAGTTCACTTATCTTTTCGGCCAAACATTCTAAGAGAATTCCACAGTTAAACGTGCTTGAGCTGGGAAAATTTTAGGATGGGTAACCTTCCGGAAAGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_66

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

346

Start:

24039660  

End:

24040005

Strand:

+

>scaffold_1_LTR-Cassandra_66

TTCCGGAAAGTATGGTAGTGCATGCAGAGAGGTTTAAAAAAATTTATTTGACCACATATGTCACCAAAGTTCACTTATCTTTTCGGTCAAACATTCTAAGAGAATTCCATAGTTAAGCGTGCTTGAGCTGGGAAAATTTTAGGATGGGTAACCTTCCGGGAAGTGATTGTCGAAACTTTATGAGTGAGGACAAAACACATAATAATATCACATGATAATTTTTATGTTTGGTAAACAAGTCTTTAAAATCTCTCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_67

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

24040006  

End:

24040116

Strand:

+

>scaffold_1_LTR-Cassandra_67

AACGGTATCAGAGCCAAACTTAGGCGAATGTGGAGTCAAGAGGATTCATACCGTCAGGGCGATAGTCTTGGTGCGCAACAAAGACGCTATGATCTTTTACTAGGGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_68

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

24040117  

End:

24040441

Strand:

+

>scaffold_1_LTR-Cassandra_68

TGTAAAACATGAGTTTCAAGAAATATGGTGGTACATGCAAAGATGTTTAATAGAGTTGATTTGGTCACCTATGTCCAAAGTGCACTTATGTTTTCGGCCAAACATCTTGAGAGAACTTTACAGTTAAGCGTGGGTGAGCTGGTAAAATTTCAGGCTGGGTGACTTTTCGGAAAGTAATTATCGTAACCGTGAAAATAAAGACAAAACATAGAAAATATCATATTGTGATTTATAGGATCAGTAACAAATCTTTAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_69

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

184

Start:

24044377  

End:

24044560

Strand:

-

>scaffold_1_LTR-Cassandra_69

TGTAACGCCCTGAACGCCACCTATCTTAGTAGGTCCTACGTCTTCTCTCGGTCTGTGAGTCCACCTCTTATCCGATGGCCGATACACTACGTCTGGGAGGCTTTGAGAATTTGTTTACCGATCCTACAAATCACAACATGATATTTTCCCGTATTTTGTCCTAACTCACACGGTTCCGACAATC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_70

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

365

Start:

24081841  

End:

24082205

Strand:

+

>scaffold_1_LTR-Cassandra_70

TGTAACACCTCCGCTTCAAGGAAATATGGTGATGCATGCGGAGATGTTTAAAATAATTTATTTGATTACCTATGTTACTAAAGTGTACTTATCTTTTCGGCCAAATTAAACATCTTAAGGGAACTCCACAGTTAAGCGTGCTTGAGCTGGGAAAATTTTAGGATGGGTAACTTTTTGGGAAGTGATTGTCGAAACTGTATAAGTGAGGACAAAACACAGGATAATATCACATGGTGATTTGTAGAGTTGGAACAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_71

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

24082206  

End:

24082316

Strand:

+

>scaffold_1_LTR-Cassandra_71

AACAGTATTAGAGCCAAACCCAGACGAATGTGGAGTCAAGAGGGTTCACAGTGTCGGGATGATAGTCTTGGTGCGCAACGAGGACGTTATAATTTGTTAGTATTGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_72

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

326

Start:

24082317  

End:

24082642

Strand:

+

>scaffold_1_LTR-Cassandra_72

TGTAACACATCTGTTTCAGAGAATATGGTGGTGTATGCAGAAATTTTTAATAGAATTGATTTTGTCACCTATGTCCAAAGTGAACTTATCTTTTCGGTCAAACATTTTGAGAGAACTCCACAGTTAAGCGTGCGTGGGCTATTAAAATTTCATGATTGGTGACTTTCCGGAAAGTGATTGTCGTAATCGTGAAAATAAAGACAAAACACAGAGAAATATCATATGGTGATTTATAGGAACGGTAACAAGTCTTTA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_73

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

337

Start:

24238240  

End:

24238576

Strand:

+

>scaffold_1_LTR-Cassandra_73

AATATGGTGGTGCATGCGGAGAGGTTTAAAAGAATTGATTTGGCTACTTATGTCACCATAGTGCACTTATCTTTTCAATCAACTGTCCTGAGAGAACTCCACAGTTAATCGTGCTTGAGCTGGAGCAATTTCAAGATGGGTGACCTTCGGAAAGTGATTGTCGGAACTCTGTGTGTGAGGACAAAACATAGGAAAAGATCATGTGGTGATTTATAGGGTCGGTAAACAAGTCTTTTAGGCCTCCCGGACGTAGCG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_74

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

228

Start:

25215609  

End:

25215836

Strand:

+

>scaffold_1_LTR-Cassandra_74

GTACTTGAGATGGAGCAATTTAAAGATAGATGACTTTCCGAGAAGTGATTATCGAAATCATGTGAGTGAAAATAAAAACACAGAAAAAAATCATGTAGTTGTTTTATAAAATCGGTAAACGAGTCTTTAAAAACCCTCTGGATATAGCAGACCGGCTGTCAGACACAAATAAATTTGCGGACTGATAATATATGTGAGGCTCATTAAAATAGCGGTCGGAACGTTACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_75

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

102

Start:

25225696  

End:

25225797

Strand:

+

>scaffold_1_LTR-Cassandra_75

TGTAACACCTCGGTTTCAAGAATATGATGATGCATGCAGAGAGATTTTAAAAAATTGATTTGGCCACCTATGTCACCAAAGTGCACTTATCTTTTCGGTCAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_76

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

254

Start:

25227014  

End:

25227267

Strand:

+

>scaffold_1_LTR-Cassandra_76

TCCTGAGAGAACTCAAGGGTTAAACGTGCTTGTGCTGGAGCAATTTTAGGATGGGTGACTTTCCGGAAAGTGATTGTTGGAACTATGTGAGTGAGGACAAAACATAGGGAAAGATCATGTGGTGATTTGTAGGTTTGGTAAACAAGTCTTTAAAGCCTCTCGGACGTTGCAGACCGACCATCGGTTAAGAGTGGAGCCCATGGACCCGACAGAAGACGTGAGTGCTAACTGGTAGGGACGGTTGGGGCGTTACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_77

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

159

Start:

25228057  

End:

25228215

Strand:

+

>scaffold_1_LTR-Cassandra_77

GGAACTGTGTGAGTGAAGACCAAACACAGAGAAAGATCATGTGGTAATATGTAGAATCGGTAAACAAGTCTTTAAAGCCTCCCAGATGTTACGGACCGACCGTCAGTTAGGATGGACCCGACATGGGTGCTGACTTGTAGGAACGATCAGGGTAATACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_78

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

344

Start:

25230864  

End:

25231207

Strand:

+

>scaffold_1_LTR-Cassandra_78

TGTAACACCCCGGTTTCAGGAATATGGTGATGCATGAAGAGAGATTTTAAAAAATTAATTTGGCCACGTATGTCACCAAAGTGCACTTATCTTTTTGGTCAACTGTCCTGAAAGAACTCCTGGGTTAAGCGTGCTTGAGCTGGAGCAATTTTATGATGAATGACCTTTCGTGAAGTGATGGTCGGAACTGTGTGAGTGAAGACCAAACAGAGAGAAATGTGGTAATTTGTATGATCGGTAAAATTGACATTAAAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_79

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

344

Start:

25233410  

End:

25233753

Strand:

+

>scaffold_1_LTR-Cassandra_79

TGTAACACCCCGGTTTCAGGAATATGGTGATGCATGAAGAGAGATTTTAAAAAATTAATTTGGCCACGTATGTCACCAAAGTGCACTTATCTTTTTGGTCAACTGTCCTGAAAGAACTCCTGGGTTAAGCATGCTTGAGCTGGAGCAATTTTATGATGGATGACCTTTCGTGAAGTGATGGTCGGAACTGTGTGAGTGAAGACCAAACAGAGAGAAATGTGGTAATTTGTATGATCGGTAAAATTGACATTAAAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_80

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

344

Start:

25236210  

End:

25236553

Strand:

+

>scaffold_1_LTR-Cassandra_80

TGTAACACCCCGGTTTCAGGAATATGGTGATGCATGAAGAGAGATTTTAAAAAATTAATTTGGCCACGTATGTCACCAAAGTGCACTTATCTTTTTGGTCAACTGTCCTGAAAGAACTCCTGGGTTAAGCGTGATTGAGCTGGAGCAATTTTATGATGGATGACCTTTCGTGAAGTGATGGTTGGAACTGTGTGAGTGAAGATCAAACAGAGAGAAATGTGGTAATTTGTATGATCGGTAAAATTGACATTAAAG