ID Class Order Superfamily Length Start End Strand View
scaffold_1_LTR-Cassandra_81 RetrotransposonsLTRLTR-Cassandra3482524281225243159+
scaffold_1_LTR-Cassandra_82 RetrotransposonsLTRLTR-Cassandra3592610918926109547-
scaffold_1_LTR-Cassandra_83 RetrotransposonsLTRLTR-Cassandra1122610954826109659-
scaffold_1_LTR-Cassandra_84 RetrotransposonsLTRLTR-Cassandra3592610966026110018-
scaffold_1_LTR-Cassandra_85 RetrotransposonsLTRLTR-Cassandra3592678636626786724-
scaffold_1_LTR-Cassandra_86 RetrotransposonsLTRLTR-Cassandra1112678672526786835-
scaffold_1_LTR-Cassandra_87 RetrotransposonsLTRLTR-Cassandra3582678683626787193-
scaffold_1_LTR-Cassandra_88 RetrotransposonsLTRLTR-Cassandra1122678719426787305-
scaffold_1_LTR-Cassandra_89 RetrotransposonsLTRLTR-Cassandra3592678730626787664-
scaffold_1_LTR-Cassandra_90 RetrotransposonsLTRLTR-Cassandra2322748072727480958+
scaffold_1_LTR-Cassandra_91 RetrotransposonsLTRLTR-Cassandra1842748113827481321+
scaffold_1_LTR-Cassandra_92 RetrotransposonsLTRLTR-Cassandra3252761883827619162-
scaffold_1_LTR-Cassandra_93 RetrotransposonsLTRLTR-Cassandra3563092489230925247-
scaffold_1_LTR-Cassandra_94 RetrotransposonsLTRLTR-Cassandra853092524830925332-
scaffold_1_LTR-Cassandra_95 RetrotransposonsLTRLTR-Cassandra3563094711330947468-
scaffold_1_LTR-Cassandra_96 RetrotransposonsLTRLTR-Cassandra1123094746930947580-
scaffold_1_LTR-Cassandra_97 RetrotransposonsLTRLTR-Cassandra3573094758130947937-
scaffold_1_LTR-Cassandra_98 RetrotransposonsLTRLTR-Cassandra3573099685230997208+
scaffold_1_LTR-Cassandra_99 RetrotransposonsLTRLTR-Cassandra1093099721130997319+
scaffold_1_LTR-Cassandra_100 RetrotransposonsLTRLTR-Cassandra3553099732030997674+

< 5 6 7 8 9 > Total 36


Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

348

Start:

25242812  

End:

25243159

Strand:

+

>scaffold_1_LTR-Cassandra_81

TGTAACACCCCGGTTTCAGGAATATGGTGATGCATGAGAGAGATTTAAAAAACCTAATTTTGCCACGTATGTCACCAAGGTGCACTTATCTTTTCGGTCAACTGTCCTGAGAGAACTCCAGGGTTAAGCGTGCTTGAGTTGGAGCAATTTTAGGATGGGTGACATTCCGTAAAGTGATTGTCTGAACTGTGTGAGTGAGGACCAAACAAAGGAAAAGATCATGTGATAATTTGTATGATCGGTAAACAAGTCTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

26109189  

End:

26109547

Strand:

-

>scaffold_1_LTR-Cassandra_82

TGTAATGCCCTCACCGCCACCTCACTTAATGGGCCCCACGTCCTCTCTCGGCCCGTGGGCCCACTATCTTCTGACGGCCGGTTCGCTATGTCCGAGAGGCTTTAAAGACTTGTTTACCGACCCTACAAATCACCACATGATCTTTCCCTGTGTTTTGTCCTCACTCACACAGTTCCGATAATAACTTCTCAGAAGGTCACCCATCCTAAAATTGTTCCAGCTCAAGCACGCTTAACTGTGGAGTTCTCTCAGGAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

26109548  

End:

26109659

Strand:

-

>scaffold_1_LTR-Cassandra_83

ATTCACCCTTACTAACAGATCGCAACGTCCTCGTTGCGCACCAAGACCGTCACCCCCGACGGTGTGAGCTCTCTTGACTCCACACTCGACTGGGTTCAGCTCTGATACCATT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

26109660  

End:

26110018

Strand:

-

>scaffold_1_LTR-Cassandra_84

TGTAACGCCCCGACCGCCACCTCTCTTAATGGGACCCACGTCTTCTCTCAGCATGTGGGCCCACTATCTTCCGACGGCCCGTTTGCTACGTTCGGGAGGCTTTAAAGACTTGTTTACCAACCCTACAAATCACCACATGATCTTTCCCTGTGTTTTATCTTCACTCACATAGTTCCGACAATCACTTCCCGGAAGGTCACCCATCCTAAAATTGCTCAAGCTCAAGCATGCTTAACTGTGGAGTTCTCTCAGGAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

26786366  

End:

26786724

Strand:

-

>scaffold_1_LTR-Cassandra_85

TGTAACACCCCGACCGCCCCTACTAGTGAGCACCCACATCCTTTCTCAGGTCCATGGGCCCCACTCTTGTCCGACGGTCAGTCGGCTGCGTTCAGGAGGTTTTAAAGACTTGTTTACCGACCCTACAAATCACCACATGATCCTTTCCTGCATTTTCCCCCCACTCACACAATTCTGACAATCACTTCCCGGAATGTCATCCATCCTAAAATTGCTCCAGCTCAAGCACGCTTAACTGTGGAGTTCTCTCGGGAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

26786725  

End:

26786835

Strand:

-

>scaffold_1_LTR-Cassandra_86

ATTCACCCCCACTAACAGATCGTAAGGTCCTCGTTGCTCCCAAGACCGTCACCCCTGACGGTGTGAGTCCTCTTGACTCCACACTCGACTTGGTTCGGCTCTGATACCACT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

358

Start:

26786836  

End:

26787193

Strand:

-

>scaffold_1_LTR-Cassandra_87

TGTAACGCCCCGACCGCCATCTCTCTTATTGGACTCCACGTCCTCTCTTGGCCCGTGGGCCCACCATCTTCTGACGGTCGGTCCGCTACGTCCGGGAGGCTTTAAGACTTGTTTACCGATCATACAAATCACCACATGATATTTTCCTATGTTTTGTCCTCACTCTCACAGTTCCGACAAACACTTTCCAGAAGGTCACCTATCCTGAAATTACTCCAGCTCAAGCACCATGAACTGTGGAGTTCTCTCAAGACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

26787194  

End:

26787305

Strand:

-

>scaffold_1_LTR-Cassandra_88

ATTCACCCCCACTAACAGATCGCAACGTCTTCGTTGCGCACCAAGACCCTCACCCCCGGCGGTGTGAGTCCTCTTGACTCCACACTCTTCTGTGTTCGGCTTTGATACCACT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

26787306  

End:

26787664

Strand:

-

>scaffold_1_LTR-Cassandra_89

TGTAACTCCCCGACCGCCCGCACTAGTGAGCACCCACGTCCTCTTCCGGGCCCATGAGCCCCACTCCTGTCCGACGGTCGGTCCGCTATGTCCAGGAGGCTTTAAAGACTTGTTTATCGATCCTACAAATCACCACATGATATTTTCCTGTGTTTTGTCCTCACTCACATAGTTCCGACAATCACTTCCCGGAAAGTCACCCTTCCTGAAATTGCTCCAGCTCAAACACACTTAATTATGGAGTTCTCTCAGGAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

232

Start:

27480727  

End:

27480958

Strand:

+

>scaffold_1_LTR-Cassandra_90

TGTTATACTTCGATTTGGTAAAATATGGTGGTACATTACTAGTATTTAAGAGAATTGAATCGGCTACCAAATTAAGTGTACTTATATTTTCTGTCTAATATCCTGATAGATTTTTAAAGTTAAACATTTTTGAGTTAGAGCAATTTCAAGATGGCTCACATGCTAGAAAGTGCTTTTTGGTATCTTGTGAGTGTAAGAACAAAGTACAAGAAATTATCTTGTTGTGATTTAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

184

Start:

27481138  

End:

27481321

Strand:

+

>scaffold_1_LTR-Cassandra_91

ATGAGGAGCGATTAAAAGAATTGATTTGGTTACGTATGTCACAAAAATATACTTATTTTTTTTGTCAAACATTCTGATAGAAGTTTAGAGTTGAACATGTTTGAGCTTGAGTCATCTCATAATGGGTGACCTACAAAAACTTGATTTTATATACAATGTAGTAAGGATAAAACTCGAAAAAGAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

27618838  

End:

27619162

Strand:

-

>scaffold_1_LTR-Cassandra_92

CCTATATTCTCTCTCAGGCTCGTAGCACCACCCTTGTCCGACAGTCGGTCCGCTACATCCGGAAGGCTTAAAGACTTGTTTACCGACTATACAAATTACCACATGATTTGTTCCCGTGTTTTGTCCTCACTCGCACGGTTCTGACGTTCACATCCCAGAAGGTCATCCATCCTGAAATTGCTTCAGCTCAAGCACGCTTAACTATGAAGTTTTCTTAGGATGTTTGACCAAAAAGATAAGTGTACTTTGGTGACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

356

Start:

30924892  

End:

30925247

Strand:

-

>scaffold_1_LTR-Cassandra_93

TGTAACGCCCCGACCGTCCCTACTAGTGGTCCCACGTCCTCTCTCTGGCCCATCGGCGTATCCCTGTCCGACGGCCGGTCCGCTATATCCGGGAGGCTTTAAATATTTGTCTACCGACCTTACAAATTACCACATGATCTTTCTCTGTATTTTGTCCCCACTCACACAGTTCCGACAATCACTTCCCGGAAGGTCACCCATCCTGAAACTACTCTAGCTCAAGCACCATTAATTGTGGAGTTCTCTTAGGACAGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

85

Start:

30925248  

End:

30925332

Strand:

-

>scaffold_1_LTR-Cassandra_94

ATTCACCCCCACTAACAGATCGCAACGTCCTCGTTGCGCACCAAGACCGTCACCCTCTACGGTGTGAGCCCTATTGACTCCACAC

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

356

Start:

30947113  

End:

30947468

Strand:

-

>scaffold_1_LTR-Cassandra_95

TGTAACGCGCCGACCGTCCCTACCAGTGGGCCCCACGTCCTCTCTCGGGCCCATCGTCCCACCCCTGTTCGACGGCCGGTCCGCTACGTCTGGGAGGCTTTAAAGACTTGTCTACTGATCCTACAAATCACCACATGATCTTTCTCTGTGTTTTGTCCTCACTCACACAGTTCCGACAATCACTTCTCGGAAGGTCACCCATCATGAAACTACTCCAGCTCAAGCACCCTTAACTGTGGAGTTCTCTCAGGACAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

30947469  

End:

30947580

Strand:

-

>scaffold_1_LTR-Cassandra_96

ATTTACCCCTACTAACAAATCGCAACGTCCTCGTTGCCCACCAAGACTGTCACCCTCTACGGTGTGAGCCCTCTTGAATCCACACTCATCTGGGTTTGGCTTTGATACCACT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

357

Start:

30947581  

End:

30947937

Strand:

-

>scaffold_1_LTR-Cassandra_97

TATAACGCCCCGACCGTCCCTACCAGTGGGCCCTACGTCCTCTCTCGGGCCCATCGGCCCACCCCTGTCCGACGGCCGGTCCGCTACGTCTGGGAGGCTTTAAAGACTTGACTATCGACCCAACAAATCACCACATGATCTTTCCCTGTGTTTTGTCCTCACTCACACAGTTATGACAATCACTTTCCGGAAGGTCACCCATCCTGAAACTACTCCAGCTCAAGCACCTATAACTGTGGAGTTCTCTCAGGATAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

357

Start:

30996852  

End:

30997208

Strand:

+

>scaffold_1_LTR-Cassandra_98

TGTAACACCCCGGTTTCGGGAATATGGTGGTGCATGCGGAGGGGCTTAAAAGAATTGATTTGGCCACCTATGTCACCAAAGTGTACTTATCTTTTCGGTCAACTGCCCTGAGAGAACTCCACAGTTAAGGGTGCTTAACTAGGGCAATTTCAAGATGGGTGACTTCGGAGAAGTGATTGTTAGAACTGTGTGGTTTAGGACAAAACACAGGGAAAGATCATGTGGTGATTTGTAGGGTCAGGAAATAAGTTTTTA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

109

Start:

30997211  

End:

30997319

Strand:

+

>scaffold_1_LTR-Cassandra_99

TAGTATCAGAGCCGAACCCAGACAATTGTGGAGTCAAGAGGGCTTACACTGTCGGGGTCACGGTCTTGGTGCGCAACGAGGACGTTGCGTTCTGTTAATGGGGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

355

Start:

30997320  

End:

30997674

Strand:

+

>scaffold_1_LTR-Cassandra_100

TGTAACACCCTGATTTCAAGAATATGGTGGTGCATCCAGAGAGGTTTAAAAAAATTGATTTGGCCACCTATGTCACCAAAGTGCACTTATCTTTTCGGTTATCCTGAGAGAACTCCATAGTTAAGGGTGCTTGAGCTGGAGCAATTTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACTGTGTGAGTGAAGATAAAACACAAGAAAAGATCATGTGGTGATTTGTAGGGTCGGTAAACAAGTTTTTAAA