ID Class Order Superfamily Length Start End Strand View
scaffold_1_LTR-Cassandra_41 RetrotransposonsLTRLTR-Cassandra1101811875418118863+
scaffold_1_LTR-Cassandra_42 RetrotransposonsLTRLTR-Cassandra3181812800218128319+
scaffold_1_LTR-Cassandra_43 RetrotransposonsLTRLTR-Cassandra3381813274918133086-
scaffold_1_LTR-Cassandra_44 RetrotransposonsLTRLTR-Cassandra1101813308718133196-
scaffold_1_LTR-Cassandra_45 RetrotransposonsLTRLTR-Cassandra3431813320418133546-
scaffold_1_LTR-Cassandra_46 RetrotransposonsLTRLTR-Cassandra3472160799121608337-
scaffold_1_LTR-Cassandra_47 RetrotransposonsLTRLTR-Cassandra3532178454321784895-
scaffold_1_LTR-Cassandra_48 RetrotransposonsLTRLTR-Cassandra3592197709221977450+
scaffold_1_LTR-Cassandra_49 RetrotransposonsLTRLTR-Cassandra1132197745121977563+
scaffold_1_LTR-Cassandra_50 RetrotransposonsLTRLTR-Cassandra3592197756421977922+
scaffold_1_LTR-Cassandra_51 RetrotransposonsLTRLTR-Cassandra1352232454622324680-
scaffold_1_LTR-Cassandra_52 RetrotransposonsLTRLTR-Cassandra3592250118822501546-
scaffold_1_LTR-Cassandra_53 RetrotransposonsLTRLTR-Cassandra1102250154722501656-
scaffold_1_LTR-Cassandra_54 RetrotransposonsLTRLTR-Cassandra3462250165922502004-
scaffold_1_LTR-Cassandra_55 RetrotransposonsLTRLTR-Cassandra3282254083222541159+
scaffold_1_LTR-Cassandra_56 RetrotransposonsLTRLTR-Cassandra3762267152022671895+
scaffold_1_LTR-Cassandra_57 RetrotransposonsLTRLTR-Cassandra1112267189622672006+
scaffold_1_LTR-Cassandra_58 RetrotransposonsLTRLTR-Cassandra3022267200722672308+
scaffold_1_LTR-Cassandra_59 RetrotransposonsLTRLTR-Cassandra3602297988422980243-
scaffold_1_LTR-Cassandra_60 RetrotransposonsLTRLTR-Cassandra3512342897523429325+

< 3 4 5 6 7 > Total 36


Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

18118754  

End:

18118863

Strand:

+

>scaffold_1_LTR-Cassandra_41

TGGTATCAGAGCCGAACCAGGCGAGTGTGGCGTCAAGAGGGCTCACATTGTCGGGGGGTGACAGTCTTGGTGCGCAACGAGGACGTTGTGATCTGTTAGTAGGGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

318

Start:

18128002  

End:

18128319

Strand:

+

>scaffold_1_LTR-Cassandra_42

AGGTTCAAAAGAATTGATTTGGTCATCTATGTTACCAAAATGCACTTATCTTTTCGGTCAAATGTCCTGATAGAAGTCCACAGTTAAGCATGCTTGAGGTAGAGCAATTTCAAGATGGGTTAACTTCCGGAAAGTGATTATCGGAACGGTGTGAGTGAGGACAAAACACATGGAAAGATCATGTGGTGATTGGTAGGGTCGGTAAGTAAGTCTTTAAAGCCTCCCGGACGTAGCAGACCGGTCGTCGGAAGATGG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

338

Start:

18132749  

End:

18133086

Strand:

-

>scaffold_1_LTR-Cassandra_43

CTACCAGTGACCACCCACGTCCTCTCTCGGCCCCATGGGTCCCCTTCCTATCTGGCGGCCAGTCCGCTAAGTCCGGGAGGCTTTAAAGACTTATTTACCGATCCTACAAATCACCGCACGATCTTTATGTGTTTTGTCCTCACTCACACAGTTCCGACAATCACTTCCCGGAAGGTCACTCATCCTAAAATTGCTCCAGCTCATGCACCCTTAACAGTGGAGTTCTCTCAGGACACTTGACCGAAAAGATAAGTG

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

18133087  

End:

18133196

Strand:

-

>scaffold_1_LTR-Cassandra_44

ATTCACCTCCACTAACAGATCGCAACGTCCTCGTTGTGCACCAAGACCGTCACCCCCGACGGTGTGAGCCCTCTTTATTCCACATTCATATGGGTTTGGCTATGATACCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

343

Start:

18133204  

End:

18133546

Strand:

-

>scaffold_1_LTR-Cassandra_45

CGCCCCTACAGTGAGCACCCACGTCCTCTCTCGGGTCTGTGGGCCCCAATCCTGTCTAACGGCTGGTCCGCTACGTCAGGGAGGCTTTAAAGACTTGTTTACCGATCCTAATAATCACCACATGATATTTTCTTGTGTTTATCGTCATTTAAACAGTTCTGACAATCACTTCACAGAAGGTCATCCATCCTGAAATTGCTCTAGCTCATGCACCCTTAACTGTGGAGTTCTCTCAGAACAGTTCACCGAAACGAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

347

Start:

21607991  

End:

21608337

Strand:

-

>scaffold_1_LTR-Cassandra_46

TGTAATGCTACGATCGCCACCGTATATGATCTTCACGTTCTATTTTGATGTGTGGGTTTTTACTTTTGACTAATAGTCAGTGCACTATTTTTGGAGGTTTCGAAAATTTGTTTATTGACCCTACAAATTATCACGCAATATTTTCTTATGATTGTTTTCACTTACACAGTACCGAAACTTATTTCTTGGTAAGTCACATATCTTAAAATTGTTTCAGCTCAAAATTTAATATTGGAGTTCTTACAAGATGTCCGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

353

Start:

21784543  

End:

21784895

Strand:

-

>scaffold_1_LTR-Cassandra_47

TGTAACGCCCCGACGCCATCTTTTTTAATAGGCTTCATGTCCTCTCTTAGCCGGTGGGTCCACCTGTGTCTGGCGGCCGATCTGCTACGTCTGGGAGGCTTGAAAGAATTGTTTAGCGATCCTACAAATCACCACATAATTCCGTGTTTTGTTCTCACTTGCATAGTTCCGACAATCACCTTACGGAAAGACACCCATCCCAAAATTGCTCCAGCTCAAGGACCCTTAACTATGAAGTTCTCTCAGGACAGTTGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

21977092  

End:

21977450

Strand:

+

>scaffold_1_LTR-Cassandra_48

TGTAACACCCCGAATTCAGGAATATGGTGGTGCATGCGGAGAGCTTTAAAAGAATTGATTTGGCCACCAATGTCACCAAAGTGCACTTATCTTTTCGGTCAGCTGTCCTGAGAGAACTCCACAGTTAAGCGTGCTTGTGCTGGAGTAGTTTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACCGTGTGAGTGAGGACAAAACACGGGAAAAGATCATGTGGTGATTTGTAAGGTCGGTAAACAAGTCTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

21977451  

End:

21977563

Strand:

+

>scaffold_1_LTR-Cassandra_49

AGTGGTATCAGAGCCGAACCCAAACAAGTGTGGAGTCAGGATGGCTCACACTGTGGGGGTGACGGTCTTGGTGCGCAACGAGGACGTTGCGATCAGTTAGTGGGGGGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

21977564  

End:

21977922

Strand:

+

>scaffold_1_LTR-Cassandra_50

TGTAACACCCCGAATTCAGGAATATGGTGGTGCATGCGGAGAGGTTTAAAAGAATTGATTTGGCCACCTATGTCACCAAAGTGCACCTATCTTTTCGGTCAGCTGTCCTGAGAGAACTACACAGTTAAGCGTGCTTGTGCTGGACTAGTTTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACCGTGTTAGTGAGGACAAAATACGGGAAAAGATCATGTGGTGATTTGTAGGGTCGGTAAACAAGTCTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

135

Start:

22324546  

End:

22324680

Strand:

-

>scaffold_1_LTR-Cassandra_51

TGTAACGCCTTGACTGCTCTTACCAGTGAGCACCCATGTCCTCTCTCGGCCCGTGGGCCCACCTCTGTCCGACGGTCGGTTCGATACGTCCGAGAGATTTTAAAGATTTGTTACCGACCCAACAAATCAATACAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

359

Start:

22501188  

End:

22501546

Strand:

-

>scaffold_1_LTR-Cassandra_52

TGTAACGCCTCGACCGTTTCTACTAGTGAGCATCCACGTTCTCTCTAGGGTCCGTGGATCAAACCTTGTCTGACGGTCGTTCCGTTACGTTTGGGAAGATTTAAAGACTTGTTTCACCGACCCTATAAATCACCACATGATCTTTCCACATGTTTTGTCTTCACGCACACGGTTCCGATAATCACTTCGCGAAAAGTCATCAATCATAAAATTGTTCCAGCTCAAGCATGTGTAACTGTGAAGTTCTTTCAGGAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

110

Start:

22501547  

End:

22501656

Strand:

-

>scaffold_1_LTR-Cassandra_53

ATTCACCCTTACTAACAGATCACAACTTCCTCGTTGCGCACCAAGACCGTCACCCCCGACGGTGTGAGCCCTCTTGACTCCATACTCGCCTGGGTTCGAGTATGATACCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

346

Start:

22501659  

End:

22502004

Strand:

-

>scaffold_1_LTR-Cassandra_54

TGTAACGCCCCGACCGCTTCTACTAGTGAGCACCCATCTGTCTATGGGCCCACTCATGTCCGACAGTCGGTCCGCTACATCCAGGCAGCTTTAAAGACTTGTTTACCGTCCTACAAATCACCAAATGATCTTTCCTTGTGTTTTGGCCTCACTAACACGGTTCCGACAATCACTTCCCAAAAGGTCACCAATCCTGAAATTGTTCTAGCTCAAGCGCGCTTAATTGTGGAGTTCTCTTAGGACAGTTTACCGAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

22540832  

End:

22541159

Strand:

+

>scaffold_1_LTR-Cassandra_55

TGTAACACCCCGTTTTCAAAAATATGGTGGTGCATGCGGAGAGGTTTAAAAGAATTGATTTGGCTACTTATGTCACCAAAGTGCACTTATCTTTTCGGTCAACTGTCCTGAAAGAACTCCACAGTTAATAGTGTTTGAGCTAAAGCAATTTCAGGATGGGTGATCTTCCGGGAAGTGATTATCGGAACTGTGTGGGTGAGGACAAAACATAGAAAAAGATTATGTGGTGATTTGTAGGGTTGGTAACAAGTCTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

376

Start:

22671520  

End:

22671895

Strand:

+

>scaffold_1_LTR-Cassandra_56

TGTCATACTCCGATTTCAGGAATATAGTGGCACATGCAAAGAGGTTTAAAAGAACTGATTTGGCCACCTATGTCACAAAAGTGCACTTATCTTTTCGGTCAACCGTCATGAGAGACCTCCAAAGTTAAACGTGTTTGGGCTGGAGTAGTGTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACTGTGTGAGTGAGGACATAACAAAGAGAAATATCATGTGGTGATTTATAGGGTCGGTAACAAGTCTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

22671896  

End:

22672006

Strand:

+

>scaffold_1_LTR-Cassandra_57

AGTGGAATTAGAGCAGAACCTAGACGAGTGTGGAGTCAAGAGGGCTCACGTCGTAGGGGGTGACGGTCTTGGTGCGCAACGAAGACGTTGCGATCTGTTAGTGGGGTGAAT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

302

Start:

22672007  

End:

22672308

Strand:

+

>scaffold_1_LTR-Cassandra_58

TGTAACACCCCGATTTCAGGAATATAGTGGTGCATGCGGAAAGGTTTAAAAGAATTGACTTGACCACCTATGTCAATAAAGTGCACTTATCTTTTCTGTCAACCGTCCTGAGAAAACTCCAAAGTTAAGCGTGTTTGGGCTGGAGTAGTGTCAGGATGGGTGACTTTCCGGGAAGTGATTGTCGAAACTGTGTGAGTGACGACAAAACACAGGGAAATATCATGTGGTGATTTGTAGGGTCGGTAACAAGTCTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

360

Start:

22979884  

End:

22980243

Strand:

-

>scaffold_1_LTR-Cassandra_59

TGTAACGTCCCGACCGTCCCTACCAGAGAACACCCACGTCCTCTTTCGAGCCCATGGGCCCCACTCCTGTCCAACGGTCGGTCCACTACGTCCGGGAGGCTTTTAAAGACTTGTTTACCGATCCTACAAATCACCACATGATTTTTCCCTATGTTTTGTCCTCACTCACATAGTTCCGACAATCACTTCCTGGAAGGTCACTCATCCTGAAATTGCTCCAGCTCAAGCACGCTTAACTGTGGAGTTCTCTCAGGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_1_LTR-Cassandra_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

351

Start:

23428975  

End:

23429325

Strand:

+

>scaffold_1_LTR-Cassandra_60

TGTAACACCCCGGTTTCAGGAATATGGTGGTGCATGCAGAGAGGTTTAAAAGAATTGATTTGGCCACCTATGTCACCAAAGGGCACTTATCTTTTCGGTCAACGGTCCTGAGAGAACTCCACAGTTAAACGTGTTTGGGCTGGAGTAGTTTCAGGATGGGTGACCTTCCGGGAAGTGATTGTCGGAACCGTGTGAGTGAGGACAAAACACTGGAAAGATCATGTGGTGATATGTAGGGTCTGCAAACAAGTCTTT