ID Class Order Superfamily Length Start End Strand View
Scaffold13763_LTR-Cassandra_41 RetrotransposonsLTRLTR-Cassandra310982910138+
Scaffold13780_LTR-Cassandra_42 RetrotransposonsLTRLTR-Cassandra29152795569+
Scaffold13822_LTR-Cassandra_43 RetrotransposonsLTRLTR-Cassandra35877708127+
Scaffold13886_LTR-Cassandra_44 RetrotransposonsLTRLTR-Cassandra981374513842+
Scaffold13886_LTR-Cassandra_45 RetrotransposonsLTRLTR-Cassandra1111390214012+
Scaffold13886_LTR-Cassandra_46 RetrotransposonsLTRLTR-Cassandra3101402814337+
Scaffold13902_LTR-Cassandra_47 RetrotransposonsLTRLTR-Cassandra28423892672-
Scaffold13902_LTR-Cassandra_48 RetrotransposonsLTRLTR-Cassandra32361066428-
Scaffold13923_LTR-Cassandra_49 RetrotransposonsLTRLTR-Cassandra861089110976-
Scaffold13923_LTR-Cassandra_50 RetrotransposonsLTRLTR-Cassandra2921095011241-
Scaffold1401_LTR-Cassandra_51 RetrotransposonsLTRLTR-Cassandra24862386485-
Scaffold1401_LTR-Cassandra_52 RetrotransposonsLTRLTR-Cassandra30270237324+
Scaffold14038_LTR-Cassandra_53 RetrotransposonsLTRLTR-Cassandra8510761160-
Scaffold14060_LTR-Cassandra_54 RetrotransposonsLTRLTR-Cassandra8413311414-
Scaffold14120_LTR-Cassandra_55 RetrotransposonsLTRLTR-Cassandra23712021438+
Scaffold14187_LTR-Cassandra_56 RetrotransposonsLTRLTR-Cassandra24788334+
Scaffold14259_LTR-Cassandra_57 RetrotransposonsLTRLTR-Cassandra169646814-
Scaffold1429_LTR-Cassandra_58 RetrotransposonsLTRLTR-Cassandra23014241653-
Scaffold14553_LTR-Cassandra_59 RetrotransposonsLTRLTR-Cassandra16523972561-
Scaffold1466_LTR-Cassandra_60 RetrotransposonsLTRLTR-Cassandra304154457-

< 3 4 5 6 7 > Total 14


Capsella grandiflora (v1.1)

ID:

Scaffold13763_LTR-Cassandra_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

310

Start:

9829  

End:

10138

Strand:

+

>Scaffold13763_LTR-Cassandra_41

TGCGAAGAGGTTTAAATGAATtgattcgaccaCCTATGTCACCAAAGTGCACTTATCTTTTCGGTCAAGGTTCATGAGAGAATTCCACAGTTAAGCGTGCTTGTGCTGGAGTAGTCAAAGGACGGGTGACCTTCCGGGAAGTGGTTGTCGGAACTGTGTGAGTGAGGCCAAAATACAGGGAAAGAtcatgtggtgaTTTGTAGGGTCGGTAAACAAGACTTTAAACCTCCCGGACGTAGCAAACCGGCCGTCGGATATTAATGGGCTCTTGTGACTAGTGAGAGAACGTGAGGCCCATTACGAGAGGTGG

Capsella grandiflora (v1.1)

ID:

Scaffold13780_LTR-Cassandra_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

291

Start:

5279  

End:

5569

Strand:

+

>Scaffold13780_LTR-Cassandra_42

AAAGATCCTAAAAGAACTCCATAGTTTAAAGGTGCTTCTGCTAGAGTAGTCAAAGAATGAAAAACCTTCCGGGAAGTGGTTGTCGAAACTAAGTAAGTGAGGCCAAAATACAAGGAATGTTCATGTTATGGTTTGTAGGGTCGGTAAACAAATTTtttaagccttctggacgtagcaaaccggtcgttggatatggataggttcacgtacctagtgaaggatcctaaggcccagatcatgggctGAGAGTGAGCATGGGAGCCACTGGATAGGTGACAGTCGGGGTGTTAC

Capsella grandiflora (v1.1)

ID:

Scaffold13822_LTR-Cassandra_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

358

Start:

7770  

End:

8127

Strand:

+

>Scaffold13822_LTR-Cassandra_43

TGTGAcatcccgatttTAGAAAATATAATGGTACATGCCGCGAGATTTAAAAAGAATTTATTTGGTCACCTCTGCCATCAAAGTGCATTTATCTTGTCGATCAAACATCATGAGAGAAATCCACAGTTAAGCGTGTTTGAGCTGGAGTAATTTGAGATGGGTGACCTTTAGTCAAGTGATTGCCCAAAATATGCGGTTGAGGACAAAACACGGAAAATATAATGTGGTGATTTATAGGATCGGTAAACAAATCTTAAAGTATCTCGGACGTAGCGTACCGACCGCTGGATAAGGGTGGGTTCACAGGCCGAGAGAGAGCATAGGGCTCACTAAGAAAGGTGACGGTGTGGGCATTACA

Capsella grandiflora (v1.1)

ID:

Scaffold13886_LTR-Cassandra_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

98

Start:

13745  

End:

13842

Strand:

+

>Scaffold13886_LTR-Cassandra_44

AGCAAGTCTTTAAGGCTCACAGACGTAGCAAACCGACTGTCAGATATGGATTGGCTCACGGGACTAGTGCGAGGACGTGAGGTCCATCAAGagaggtg

Capsella grandiflora (v1.1)

ID:

Scaffold13886_LTR-Cassandra_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

13902  

End:

14012

Strand:

+

>Scaffold13886_LTR-Cassandra_45

AGTGGTATTAGAGCAGAACCCAAACAATTGTGGAGTGGTGGGCTCACACTATTAGGGGGTAACGATCGTTGTGCACAACGAGGACGTTGCGGTCTGTTAGTGGGAGAGAAT

Capsella grandiflora (v1.1)

ID:

Scaffold13886_LTR-Cassandra_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

310

Start:

14028  

End:

14337

Strand:

+

>Scaffold13886_LTR-Cassandra_46

TGCGGAGAAGTTTAATTGAATTGATTTGGCCACCTATGTCATCAAAGTGCACTTACATTTTGGTCAAAGGTCCTGAGAGAACTCCACAGTTAAGCGTGCTGATGCTGGAGTAGTTCGATGATGGGTAACCTTCTGGGAAGGGGTTGTCGGAACTGTGTGAGTGAGGCCAAAACACAGAGAaagatcatgtgGTGATCTGTAGGGTCGGTAAACAAGTCTTTAAGCCTCCCATGTGTAGAAAACCGACCATCGGGATATGGATGGGCTCACGGGCCTagtgagaggacGTGAGGCCCATCAAGAGAGGTGG

Capsella grandiflora (v1.1)

ID:

Scaffold13902_LTR-Cassandra_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

284

Start:

2389  

End:

2672

Strand:

-

>Scaffold13902_LTR-Cassandra_47

CCTCTCACTAAACCCATGAGCCCATAAATATCCGACGGCCGATTTGCTACGTCCGGTAGGCTTAAAGACTTGTTTACAAACCCTATAAATCACCACATGATATTTCCCTTTGTTTTGTCCTCACTCACAATGTCCAGACAAACACTTCCCGGAATGTTACCCATACTTTGACTACTCCAGTATAAGCACGCTTAACTATGGATTTCTTTTAGGACACTTGACCGAAAAGGTAAGTGCACTTTAGTGACATAGGTGGCCAAATCAATTAATTTAAACCTCTCCGC

Capsella grandiflora (v1.1)

ID:

Scaffold13902_LTR-Cassandra_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

323

Start:

6106  

End:

6428

Strand:

-

>Scaffold13902_LTR-Cassandra_48

TGTAACTCCCCGACCGCCATCTCTCCAGTGGGCTCCATGTTCTCCACCATCCCATGGGCCCATCAAAATCCAACGGTCGGTTTGCTACGCCCGAGAGTCTTATATACTTGTTTACCGACCCGACAAATCATCACATGATCTCTCCCTGTGTTTTGGCCTCACTCATACAGTTCCGAAAGCCACTATCCGGAAGGTCAGCCAtcctttgactacggcagcataagcacacttaactgtggagttctctcaggaccctggaccgaaaagataagtgcactttagttacataggtggccaaattaattcatttaaacctctccgca

Capsella grandiflora (v1.1)

ID:

Scaffold13923_LTR-Cassandra_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

86

Start:

10891  

End:

10976

Strand:

-

>Scaffold13923_LTR-Cassandra_49

TGTAACGCCCTGACCGTCACCTCTTCAGTGAGCGCCATGTTCACTCTCAGCCCATGGGCCCACCTCTTTTAATGGGCTTCACGTCT

Capsella grandiflora (v1.1)

ID:

Scaffold13923_LTR-Cassandra_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

292

Start:

10950  

End:

11241

Strand:

-

>Scaffold13923_LTR-Cassandra_50

CCACCTCTTTTAATGGGCTTCACGTCTTTTCACTAGGCCCGTGAGCTCATCCATATCTCGGTTTGCTACATCAGTGAGGCTTAAATACTTGTTTATCAACCCTACAAATCACCACATGATCTTTCCCTATGTTTTAGCCTCACTCACACATTTCCAACAACCACTTCCTAGAAGGTCACCCATCTTGAGACTACTCTAGCATAAGCACGCTTAACTGTTGAATTCTCTCAGGACCTTAGACCGAAAAGATAAGTGAACTTTGGTGACATAAGTGGTCAAGTCAATTAATTTA

Capsella grandiflora (v1.1)

ID:

Scaffold1401_LTR-Cassandra_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

248

Start:

6238  

End:

6485

Strand:

-

>Scaffold1401_LTR-Cassandra_51

TCGGTTTGCTACGTCCGGGAGGGTTATATACTTGTTTACCGACCCTACAAATCACCATATGATCTTTCCATGTGATTTTGCCTCACTCACACAGTTCCGACAATCACTTCCTGGAAGGTCACCCATCCTTTGACTACTCCAGCATAagcacgcttaaCTGTGGAGCTCTCTCAGGACCTTTGACCGAAAAAGATAAGTGCACTTTGGAGACATAGGTGGCCAAATCAATTTATTTAAACCTTTCCGCA

Capsella grandiflora (v1.1)

ID:

Scaffold1401_LTR-Cassandra_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

302

Start:

7023  

End:

7324

Strand:

+

>Scaffold1401_LTR-Cassandra_52

TGTAGCACAACGGTTGAATTATATGGTTGCATAGAGATTTAAATGAATTGATTTAATTATCAAAAGTGCACTTAATTATCTTTTCGGTCAAGGGTCCTGGGAGAACTCCACAGTTAACATGCGTATACTGGAGTAGTCCAAGGATGGGTGATCTTCCGGGAAGTATGTGAGTGAGCCAAAACATAGGAAATGATTATGTGGTGGTACGACCGTAAAGAAGTATTTAAGCCTTCAGGACGTAGCAAACCGGCCGTCATATGTGGATAGGCTAATAGGTCTAGTGAGAGGACTTGAGACTCACT

Capsella grandiflora (v1.1)

ID:

Scaffold14038_LTR-Cassandra_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

85

Start:

1076  

End:

1160

Strand:

-

>Scaffold14038_LTR-Cassandra_53

AAATGCAAAGTTCTCTCATAGCCTTTGAGCGAAAACATAAATGCACTTCGGTGACATAAGTGGTCAAATCAATTCATCTAAACCT

Capsella grandiflora (v1.1)

ID:

Scaffold14060_LTR-Cassandra_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

84

Start:

1331  

End:

1414

Strand:

-

>Scaffold14060_LTR-Cassandra_54

ATGATTTGTTCCCGTGTTTTGTGTTCATTTGCACAATTGCAATAATCACTTCCTAGATGATCACTCGAGATCTTTGAAATATTC

Capsella grandiflora (v1.1)

ID:

Scaffold14120_LTR-Cassandra_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

237

Start:

1202  

End:

1438

Strand:

+

>Scaffold14120_LTR-Cassandra_55

TGTAAGCCTCCCTGGTTTTAGCAAACATGCGGAGAGGTTTAAAAGATCTGATTTTTCTAACTATGTCATGAAAGTACACTTATTTTTTTGGCCAAAGAtcctaaaagaacttgacagctaagtgttcttgagatagagtaggattaggatgggtgacttataggaattgattgatggaactgtgcgaatgaggaaaACCCCCAAGAAAAGATCACGTGATGATTTGGTGGTTAGGGT

Capsella grandiflora (v1.1)

ID:

Scaffold14187_LTR-Cassandra_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

247

Start:

88  

End:

334

Strand:

+

>Scaffold14187_LTR-Cassandra_56

CTTCAGAAATAAGCATGTGACATTATCCTAGAGTAGGATTTGgatgggtaaccTTTTGAGAAATGATTGTTGGAACCATACGAATGAGGACAATACACAGAGAAAGATAATGTGGTGAGTGGTAAGATTGATAAACATTTCTTTGAagtctctcggatgcaccatacaagtagacatgtaaggatggtttcacatgcagagagatgATGTGGGGCCCACTAACGAAGGTAGTGGTTTGGATGTGACA

Capsella grandiflora (v1.1)

ID:

Scaffold14259_LTR-Cassandra_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

169

Start:

646  

End:

814

Strand:

-

>Scaffold14259_LTR-Cassandra_57

ACTTGTTTCTCGATTCTACAAATCACCACATGATCTTTCCTGGTGTTTTGGCCTTTACTCACTCAGTTCCGACAACCACTTCTCGAAAGGTCACCCATCCTTGGACTACTCCAACATAAGCACGCTTAATTGTGAAGTTCTCTTGGGACCTTTGACCAAAATGATTAGT

Capsella grandiflora (v1.1)

ID:

Scaffold1429_LTR-Cassandra_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

230

Start:

1424  

End:

1653

Strand:

-

>Scaffold1429_LTR-Cassandra_58

CCGCTTTTACTAATCGGCCCCACGTCCACTCCTAGTTTTTGGGCCCTCCCATTCGAGGGCCGGTTATCTTTGTCCGAGAGGGTTTAAAAACTTGTTTACTGACCCTACAGATCACCACATGATCTTTTTTTGTGTTTTGTCTTCACCCTGACAGTTCCAGCAATCACTTCTCAGAAGGTCACTCATTCTGAAACTACTTCGGCATAAGAATGCTTAACTGTAAATTTCTC

Capsella grandiflora (v1.1)

ID:

Scaffold14553_LTR-Cassandra_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

165

Start:

2397  

End:

2561

Strand:

-

>Scaffold14553_LTR-Cassandra_59

GAAAAGTTTTTCATCCTAACTACTCCATGATTAACACGCTTAATTGTGGAGTTTTCTTATGACTCATAACCAAAAATATAAGTGTAATTTGGTGACAATTGGCCAATCAATTCTATTAAATCTCTCCGCATATACCACTATATATCATGAAACCTACGTGTCACA

Capsella grandiflora (v1.1)

ID:

Scaffold1466_LTR-Cassandra_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

304

Start:

154  

End:

457

Strand:

-

>Scaffold1466_LTR-Cassandra_60

GGCCTCACATACGCTCACTAGGCCCATGACCTCATCTATATATGATAGTAGGTTTTGCTATGTCCAAGAGGCTTTAAAGACTTATTTACCGATCCTACAAATCACCACATGATATTTTCTTGTGTTTTGGTCTCACTCACACAGTTCCAACAACTATTTCTAGGAAGGTCACCCATCTTTTGACTATTCCAACATAAGCACGCTTAACTCTTAACTCTACAGTACTCTCAAGATCCTTGACCGAAAAGGATAAGTTACTTTGGTGACATAGGTGTCAAAATCAATTCATTTAAGCCTCTCCGCA