ID Class Order Superfamily Length Start End Strand View
Scaffold16939_LTR-Cassandra_81 RetrotransposonsLTRLTR-Cassandra11125462656-
Scaffold16939_LTR-Cassandra_82 RetrotransposonsLTRLTR-Cassandra28627163001-
Scaffold17192_LTR-Cassandra_83 RetrotransposonsLTRLTR-Cassandra25126772927+
Scaffold17192_LTR-Cassandra_84 RetrotransposonsLTRLTR-Cassandra19875967793+
Scaffold1721_LTR-Cassandra_85 RetrotransposonsLTRLTR-Cassandra2981059510892+
Scaffold173_LTR-Cassandra_86 RetrotransposonsLTRLTR-Cassandra1244993350056+
Scaffold1750_LTR-Cassandra_87 RetrotransposonsLTRLTR-Cassandra2802327123550+
Scaffold1752_LTR-Cassandra_88 RetrotransposonsLTRLTR-Cassandra11545524666-
Scaffold17817_LTR-Cassandra_89 RetrotransposonsLTRLTR-Cassandra349215563-
Scaffold1787_LTR-Cassandra_90 RetrotransposonsLTRLTR-Cassandra2461654816793+
Scaffold1787_LTR-Cassandra_91 RetrotransposonsLTRLTR-Cassandra1001685116950+
Scaffold1787_LTR-Cassandra_92 RetrotransposonsLTRLTR-Cassandra1251697117095+
Scaffold1787_LTR-Cassandra_93 RetrotransposonsLTRLTR-Cassandra2336589766129+
Scaffold1787_LTR-Cassandra_94 RetrotransposonsLTRLTR-Cassandra1136618766299+
Scaffold1787_LTR-Cassandra_95 RetrotransposonsLTRLTR-Cassandra2676631366579+
Scaffold1826_LTR-Cassandra_96 RetrotransposonsLTRLTR-Cassandra19112231413+
Scaffold18288_LTR-Cassandra_97 RetrotransposonsLTRLTR-Cassandra21917341952-
Scaffold18288_LTR-Cassandra_98 RetrotransposonsLTRLTR-Cassandra11319562068-
Scaffold18325_LTR-Cassandra_99 RetrotransposonsLTRLTR-Cassandra30417322035-
Scaffold18325_LTR-Cassandra_100 RetrotransposonsLTRLTR-Cassandra11220522163-

< 5 6 7 8 9 > Total 14


Capsella grandiflora (v1.1)

ID:

Scaffold16939_LTR-Cassandra_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

111

Start:

2546  

End:

2656

Strand:

-

>Scaffold16939_LTR-Cassandra_81

ATTCTCCCCCACTAACAGACCGTAACATCCTCATTGCGCACAACGATCATCACCCCCTGACAATGTGAGACCACCACTCCACACATGCCTAGGTTCGGCTCTGATACCATT

Capsella grandiflora (v1.1)

ID:

Scaffold16939_LTR-Cassandra_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

286

Start:

2716  

End:

3001

Strand:

-

>Scaffold16939_LTR-Cassandra_82

CCACCTCTTTTTATGGCCCTCACGTCTTCTCACTAGGCCCATGAACCCATTAATATTTGACGATCGGTTTGCTACGTTGGGGAGGCTTAAATAGCACATGATCTTTCCCTGTGTTTTGCCCTCACTCATATAGTTCCGACAACCACTTCCCGAAAAATCACCCATACTTTGACTACTCCAGCATAAGCACGCTTAACTCCGGAGTTCTCTTTAGACACTTGACCAAAAAGATAAGTGCACTTTGGTCATGTAGGTGGCCAAATCAATTCATTTAAACCTTTTCGCA

Capsella grandiflora (v1.1)

ID:

Scaffold17192_LTR-Cassandra_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

251

Start:

2677  

End:

2927

Strand:

+

>Scaffold17192_LTR-Cassandra_83

TTTGGCCAAAGTTCTTGAAAGAACTCTATAGTTAAACATGCTTATGCTAGAGAAGTCAAATGATGGGTAATCTTTCGAGAAATAGTTGTCGGAACTGTATGAGTGAGGCCAAAACACCGGAAAAATCATGTGGTGATTTGTAGGGTCGGTAAACAGGTATTTCAGCCTCCCGGACGTAACTAACCGGCTGTCGGATATTGATGGGCTCATGGACCTAGTGAGAGGACGTGAAGCCCATTAGAGGAGGTAGG

Capsella grandiflora (v1.1)

ID:

Scaffold17192_LTR-Cassandra_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

198

Start:

7596  

End:

7793

Strand:

+

>Scaffold17192_LTR-Cassandra_84

TAGTCTCAAAGGATCGGTGACGTTCCAGGAAGTGGTTATAAGAATTGTGTGAGTAATACCAAAATACAGAAAAAATCATGTGGTTATTTGTAGGGTTGGAAAACAAGTTTTTAAGTCTCACGGACGTAGCAAACCGCTGTCAAATATAGATGGACTTACGGATCTAGTGAAAAAATATGAAATCCATTAAAAGTGGTG

Capsella grandiflora (v1.1)

ID:

Scaffold1721_LTR-Cassandra_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

298

Start:

10595  

End:

10892

Strand:

+

>Scaffold1721_LTR-Cassandra_85

GTAACACCTCAGTTAGGAATATATTGGTCCATGCAGAGAGGTTTAAAAGAACTGATTTGTTACACTTATCTTTTCGGTCGAATGTTTTAAGAGAGCTCTACCTTATACCGGAGTAGTTTCAGGTTGAATAACTTTCCGATAAATGATTGCTGGAACTGTACGAGTGAAAACAAAAAACGGGAAAAAATTATATGATGATTTATAGAGTCAATCAAAGATATTTAAAGCATTGCATACGTTGTCGGATACGAGTGAACTTACGGACCTGGAAAGAACATGGACTCCATTGATCTAGAGG

Capsella grandiflora (v1.1)

ID:

Scaffold173_LTR-Cassandra_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

124

Start:

49933  

End:

50056

Strand:

+

>Scaffold173_LTR-Cassandra_86

AGTATCGGTAAACAAGTTTTTAAAGCCTCTCGGATGTATCATACCGGCAGTCGTTTAAGGATGGATCCACAAGCAGAAAGATGAAGTGGAGTCCATTAAGGGAGGTGGTGGTCTGGGCATTACA

Capsella grandiflora (v1.1)

ID:

Scaffold1750_LTR-Cassandra_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

280

Start:

23271  

End:

23550

Strand:

+

>Scaffold1750_LTR-Cassandra_87

TGCGGAGAGGTTTGAATGAATTGATTTGGCTACATATGTTACCAAATTGGCACTTATCTTTTCGGTCAAAGATCCTAATAGAATTCCACAATTAAGCGTGCTTATGCTGGAGTAGTCCTCGGATGAGTGACATTCCGGGAAGTGAACCAAAACACAAGAAAATATCATGTGGTGATTTGTAAGGTCGGTAAACAAGTTTTTAAGCCTCTCGAACGTAGCAAACTCGCCGTCGTATATGGATGGGCTCACGGGCCTAGTGAGAAGACGTGAGGCTTACGGG

Capsella grandiflora (v1.1)

ID:

Scaffold1752_LTR-Cassandra_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

115

Start:

4552  

End:

4666

Strand:

-

>Scaffold1752_LTR-Cassandra_88

ACCATGCTAGCATAAACACGTTTAACTGTGGAGTTCTTTGAGGACATTTGACCAAAAAAGATATGTCAACTTTGGTGACATAGATAACCAAATCATTCGTCTAAGCCTCCCCGTA

Capsella grandiflora (v1.1)

ID:

Scaffold17817_LTR-Cassandra_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

349

Start:

215  

End:

563

Strand:

-

>Scaffold17817_LTR-Cassandra_89

TGTAACGCCCCGACCGTCACCTCTCTAGTGGGACCCATGTTCATTCTTagcccataggctcacctctcttaatgggcccATGTGCCCACCCAAATTCGGCGGTCGGTTTGTTACGTCTGGGAGGCTTGAGGACTTGTTTACCGACCCTACAAACCACCACCTGATCTTTCCTGGTGTTTTTTCCTCACTCACACAGTTCCTACAACCACTTCCCGGAAGTTCACCTATCCGGAGACTACTCGAGCATAAGCACGCTTAACTGTAGAGTTCTCTAAGGATCTTTTACCAAAAAGATAAGTGGACTTTGTTGACATAGGTGGCCAAATCAATTCATTTAAACCTCTCCGCA

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

246

Start:

16548  

End:

16793

Strand:

+

>Scaffold1787_LTR-Cassandra_90

TCAAAGGTCCTGAGAGAACTCCACAGTTAAGCGTGCTTATGTAGTTGTCGGATGGGTGACCTTCTGGGAAGTGGTTGTCAGAATAGTATGAGTGAGGTCAAAACATAGGGAAATATCATATGGTGATTTGTAGGGTCGGTAAACAAGTCTTTAAGTCTCCCGGACGAAGCAAACCGGCCGTCGGATATGGATGGGCTCATGGGTCTAGTGAAAGGACATGATTCCCATTAAGAGAGGTGGGGGCAT

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

100

Start:

16851  

End:

16950

Strand:

+

>Scaffold1787_LTR-Cassandra_91

GCATCAAAGCTGAACCCAGACGTGTGTGGAATAAGGGGCTACACCTTCAGGGGGTGACGGTCCTGGTGTGCAACGAGGTGTTTTGGTCTGTTAGTGGAGG

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

125

Start:

16971  

End:

17095

Strand:

+

>Scaffold1787_LTR-Cassandra_92

TGCAGAGAGGTTTAAATGAATTGATTTGGCCAAAAGTCACAAAAGTGCACTTATGTTTTTGGTCAAAGGTCATAAGAGAACTCCATAGTTAAGTGTGTTTATGCTAGAGTAGTTAAATGATGGGT

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

233

Start:

65897  

End:

66129

Strand:

+

>Scaffold1787_LTR-Cassandra_93

AAAGGTCCTGAAAGAACTCTACAGTTAAGCGTGCTTATGCTAGAGTAGTCAAAGGATAAGTAACCTTCCAGGAAGTGTTTGTCGGTACTGTGTTAGTGAGGCCAAAACACAGGGAAAGATCATGTGGTGATTTGTAAGGTCGGTAAACAAGTATTTAATCCTCCCGGCCGTCGGATATTGATGGACTCACGGGCCTAGTGAGAGGACGTGAGGCCTATTAAGATAGGTGGGTC

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

66187  

End:

66299

Strand:

+

>Scaffold1787_LTR-Cassandra_94

AGTGGTATTAGAGCCGAACCCAAACAAGTATGGAGTCAAGTAGGCTCACACTGTCATGGGGTGACGATCGTTGTGTGCAACGAAGACATTGCGGTTTGTTAGTGGGGAAGAAT

Capsella grandiflora (v1.1)

ID:

Scaffold1787_LTR-Cassandra_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

267

Start:

66313  

End:

66579

Strand:

+

>Scaffold1787_LTR-Cassandra_95

TTTGCCTCCTATGTCACCAAAGTGCACATATCTTTTTCCGTCAATGGTATTGAGAGAACTCCACAGTTAAGCGTGCGTATGCTGGAGTAGTCAAAGGATGGACGACCTTATGAGAAGTGGTTATTGGAACTATGTGAGTGAGGCCAATACACAGGGAAATATTATGTGGTGATTTGTAGGGTCGGTAAACAAGTATTTAATCCTCCcggatgtagcaaaccggccgttcgATATTGATGGGCCTAGTGAGAGGTCGTGAGGCCCATT

Capsella grandiflora (v1.1)

ID:

Scaffold1826_LTR-Cassandra_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

191

Start:

1223  

End:

1413

Strand:

+

>Scaffold1826_LTR-Cassandra_96

CTATATCATAAAAGTTTATTTATCTTTTTAGTCAACCATCTCGGAAAAAATGATAGTTAAGCGTGTTTATGCTTGCTAAAGCAATTTCAAAATATATGACTTTTCGGGATGTGATTGTTGGAACTAAATGAGTGAAAACAAAACACTGAAAAAATTATGTATTGATTACTATTGATAAACAAATCTTTAAA

Capsella grandiflora (v1.1)

ID:

Scaffold18288_LTR-Cassandra_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

219

Start:

1734  

End:

1952

Strand:

-

>Scaffold18288_LTR-Cassandra_97

AAGTCACCATATGATATCTCCTTGTGTTTTGTTCTCACTCGTACAATTCCAAAAGTCACTTTCATGAGGATCACCCATCCTGAAACTACTCCAACATAAGCATGCTAAACTGTGGAGTTTTCTCAGTATCTTTGACTGAAATAATAAGTGTATTTTGATGACATAAATGGCCAAATCAATTATTTAAAAGCTTTCCGCAAATACTCAAACCAGGGTATT

Capsella grandiflora (v1.1)

ID:

Scaffold18288_LTR-Cassandra_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

113

Start:

1956  

End:

2068

Strand:

-

>Scaffold18288_LTR-Cassandra_98

ATTCACCCCTACCAATAGACCGTAAAGTTTTCGTTGCACACCAAGACGGTCACCCTTAGACGGTGTAAGCCCATTTGACTCCACAGTAGTCAATGTTCAGCTATGATACCACT

Capsella grandiflora (v1.1)

ID:

Scaffold18325_LTR-Cassandra_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

304

Start:

1732  

End:

2035

Strand:

-

>Scaffold18325_LTR-Cassandra_99

TGTAACGCCTCGACCGTCACTTCTCTAATGGACCCCATGTTTATTCTCAACCCATGGTCCCAGGTTGGTTTGCTACGTCTCGGAGGCTTATAGACTTATTTACCAACCCTACAAATCACCACATGATCTTTCCTTGTTTCTTGGCCTCACTTAAACTATTCCGACAATCAATTGGTCACGCATCCCTTGACTACTCCAGCATTATCACGCTTAACTGTGAAGTTCTCTAAGGTTTCTTGACTGAAAAAATAAGTGCATTTTGGTGACATAGGTGATCAAATAAATCCATTTAAGACTCTCCGCA

Capsella grandiflora (v1.1)

ID:

Scaffold18325_LTR-Cassandra_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

2052  

End:

2163

Strand:

-

>Scaffold18325_LTR-Cassandra_100

TTCTCCCCCACTAACAGTCTGCAACGTCCTTGTTGCGCACCAAGACCGTCACCTCCTAACGGTGTGAGCACACTTGACTTCACACGCTTCTGGGTTCCGCTCTAATACCACT