ID Class Order Superfamily Length Start End Strand View
scaffold33|size1474841_LTR-Pao_41 RetrotransposonsLTRLTR-Pao83429038429120-
scaffold33|size1474841_LTR-Pao_42 RetrotransposonsLTRLTR-Pao338429126429463-
scaffold33|size1474841_LTR-Pao_43 RetrotransposonsLTRLTR-Pao101889771889871+
scaffold33|size1474841_LTR-Pao_44 RetrotransposonsLTRLTR-Pao150898305898454+
scaffold33|size1474841_LTR-Pao_45 RetrotransposonsLTRLTR-Pao387906875907261+
scaffold33|size1474841_LTR-Pao_46 RetrotransposonsLTRLTR-Pao410907247907656+
scaffold33|size1474841_LTR-Pao_47 RetrotransposonsLTRLTR-Pao405913012913416+
scaffold33|size1474841_LTR-Pao_48 RetrotransposonsLTRLTR-Pao356915420915775+
scaffold33|size1474841_LTR-Pao_49 RetrotransposonsLTRLTR-Pao393920536920928+
scaffold33|size1474841_LTR-Pao_50 RetrotransposonsLTRLTR-Pao882921882922763+
scaffold33|size1474841_LTR-Pao_51 RetrotransposonsLTRLTR-Pao358933277933634-
scaffold33|size1474841_LTR-Pao_52 RetrotransposonsLTRLTR-Pao435942079942513-
scaffold33|size1474841_LTR-Pao_53 RetrotransposonsLTRLTR-Pao113942595942707-
scaffold33|size1474841_LTR-Pao_54 RetrotransposonsLTRLTR-Pao94942700942793-
scaffold33|size1474841_LTR-Pao_55 RetrotransposonsLTRLTR-Pao320942787943106-
scaffold33|size1474841_LTR-Pao_56 RetrotransposonsLTRLTR-Pao435953958954392-
scaffold33|size1474841_LTR-Pao_57 RetrotransposonsLTRLTR-Pao889968365969253+
scaffold33|size1474841_LTR-Pao_58 RetrotransposonsLTRLTR-Pao795969359970153+
scaffold33|size1474841_LTR-Pao_59 RetrotransposonsLTRLTR-Pao346971005971350-
scaffold33|size1474841_LTR-Pao_60 RetrotransposonsLTRLTR-Pao212971872972083+

< 1 2 3 4 > Total 4


Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

83

Start:

429038  

End:

429120

Strand:

-

>scaffold33|size1474841_LTR-Pao_41

CGCTCAAGTGCCTCAACCCGAGAAATCTTTACCGTCAAACTCAACAGAACAGATCATCGACGGCCATCAAGATTCGACTGTGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

338

Start:

429126  

End:

429463

Strand:

-

>scaffold33|size1474841_LTR-Pao_42

CAAACCGAGCAATCTCCATCGTCAAACTCAGTCGAAGAGATGATGATCACTAACATTCAAGATTCTTCTGTGAAGGAAAGGACCCGGAAGAAGAGGATGGTCGTATACGTTTTGCCACATTCCGGTGAGAGTAAAGCTGACAAGGAGATTCCGGTGGCTGTGAATGTGAAGATGAACGATAACGTCAAAGAACTGAGGAACGAGTTGGTTAAGATGGAAGAGAGGGGTTAGTTAAATCTGCCTCAAGAAGGGTATTTTCTTATACACAAAAACAGAGTATTGAACGAGAATCAGTCATTCTCGGTGGTTGGTGTTGATCATGACGATATAATTGAGAT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

101

Start:

889771  

End:

889871

Strand:

+

>scaffold33|size1474841_LTR-Pao_43

AGCTTTGAAATGGAATGCAAACTTTGAACAAAGCAAGAGACCTTGAAGAAATATTAAAAGCTATAAGCAAAGAGGAGTTGGCACAGAGTTAAACCTTCAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

150

Start:

898305  

End:

898454

Strand:

+

>scaffold33|size1474841_LTR-Pao_44

CACGCGAATGACTGATCTTCATTTCATACTCTCATTCTGTACATAAAGAAGTACTTGAGGCAGATTTATATGACCCTTCCGTTAACTTTCAACCAGCTCGTTTATCAGTATTTTCACGTGATATATCGTATTCACATTCACCCAAATATT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

387

Start:

906875  

End:

907261

Strand:

+

>scaffold33|size1474841_LTR-Pao_45

TTAAGAGCCACGGGTAACATGTATAGGAACCATCTCAATTGTATCCGCGTCTTTAACACCGTTCCACTCGTATGAGTGATCTTCGTTCAATACTTCCTTTTTGTGCGTAAAGAAATACCCATCTTGAGGTAGTTTTATATGACCTCTCTGTTGACTCTGAACCATCTCGTCTCTCAGCTTTTTCACCTCATCCGTAGCGTTCACACTCACCAGAATACTCTCACCAGGATATTGCGACACAAAAACTACCATCCACTTCTTCGGGACTTTCTTGTTGCTCCTCACCTTCACAGGCGAATCTTGAATGTTAACGGTCTCTTTGACCGATTTAACTGAGTTTGACGGTGGAGATTCTTCGGTTTGATGAAGCACTTGATGATTCTTGTT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

410

Start:

907247  

End:

907656

Strand:

+

>scaffold33|size1474841_LTR-Pao_46

TTGATGATTCTTGTTGCTGCTCCCAACCATCACGGGCGAATCTTGAATCTTACTGATCTCTTGGGCTGGAGATGGCTCGGTTTGCGGCATTTGATAGTCTCCGTTGTGATTAGGGTTATCGTCAGAAGAGACGTCGAGTTGAAGACGAGAATCGTGGACGATCTGGCATGTTTGACGTTAAGATCCTCTCGAAGAATAACAATGCCGTCGACGATAAGGGTTTGTTTAGAAATAGGGATACGTTGAGACTTCTCGATTTTCTGGTTGACCTCTAACAATGTATCTGTGTTATCCACTTCAATTTCAAACGATGAGCCACTCAGAACCTCGACGAGAAACTTCATAACTGTATCAATGGTGTTTCAAAATCAATGCAATGGAGTCAAGAAAGAGAGAGAGAGCGCGAGAGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

405

Start:

913012  

End:

913416

Strand:

+

>scaffold33|size1474841_LTR-Pao_47

CTCTTCGGCTGTCAAAGGCCAATCTTTCCCCTCAAAGTACTCTTCAATTGAAATCCACGGTGCTGGAGATGGCTCAGTTTGCGGCATTTGATCGTCGTTGTTGTGAGAGACATCGAGTTGGAGACTAGAATTGTGAACGATCTGGCATTGTTCGACGTTAAGATCCTCTCGAAGAATAACAGCGCCGTCGACGATAAGGGTTTGTTTAGAAACAGGGATACGTTGAGACTTCTCGATCTTCTGTTTGACCTCTAACAATGTATCTGTGTTATCAACTTCAATTTCGAACGATGGGCCAGACAGAACCTCGACGAGAAACTTCATAACTAATAGAGAGTGATGAAGAAAACAGCGAGTAAAGAGAGAGATAAAGTGATTGTTTTGTAAAGAAAATTTACGTAGAAT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

356

Start:

915420  

End:

915775

Strand:

+

>scaffold33|size1474841_LTR-Pao_48

CTCTTCGGCTGTCAAAGGCCAATCTTGCCCCTCAAAGTACTCTTCAATTGAAATCCACGGTGCTGGAGATGGCTCGGTTTGCGGCATTTGATCGTCGTTGTTGTGAGTAGGATTATCGTCAGCAGAGACATCGAGTTGGAGACGAGAATTGTGAACGATCTGACATTGTTCGACGTTAAGATCCTCTCGAAGAATAACAGCGCCGTCAACGATAAGGGTTTGTTTCGAAACTGGAATACGCTGAGACTCCTCGATCTTCTGTTTGACCTCTAACATTGTATCCCTATAATCAACTTCAATCTCGAATGATAAGCCACTCAGAATCTTGACGAGAAATTTCATAGTTGTATCCAATG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

393

Start:

920536  

End:

920928

Strand:

+

>scaffold33|size1474841_LTR-Pao_49

TTGTTGTTTCTTATCACCTTAAGAGGCGAATTTTGAACGTTAACGATCTCTTCGGCTGAGTTTAACAGTAAAGATTTCTCCGTTTGTAGCATTTGATCGTTGTTATAATTAGGGTTAGGGTAAGGATCGACGAAGATTTTTAGACGAGAGTTGTGGAGGATCTGGCATTGTTCGATATCAAGATGATCTTGAAGAACATTGCCTTGGAAGAAAATGGTTTGTCTGGGAACAGGGATACGTTGATACTTCTCGATCTTCTTTTTGATCTCCAACACTGTATGCCAGTAACCCAATTCAATCTCGAACGTATAGCCACTCTGAATCTCGAAGAACACATCCATAATTGTATCAATTGGTGTTTCAAGACTTATGAAGAAGAGAGTAAAGAGAGAG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

882

Start:

921882  

End:

922763

Strand:

+

>scaffold33|size1474841_LTR-Pao_50

AGCTGTGAAACGAAAATACAATTCGAACAAAGGAAGAAACTTCAATAAAAGACTATAAGGAAGGAGGAGGTTGCAAAGAGTTAAAGCTTGAAAATTTTAGGTATTAAGAGCCACCGGAAACACTTCCGTTGAAAATTTCAATTGTGTCGCCGTGTTCAACACGGTGCCACCGGAATGATCTGTCGTCGTCCATTACATTCTGTTTGTATATAAAGAAATAACCTTCTTGAGGTAGAGTTAATTGAAACCTCTGTTGAATCTTAGCCAGCTCTTTCCTTAATTCTCCAACGTTATCCCCTGCGTTCACCTCCACTGGAATCTTCCTTGTCCCGCATTTCGGCAGCACCATTACTCTCAGTATCTTCGGGTTGTTGTTGTTGTTGCTCATTGCCATCATCACAGTTGAATCTTGAAGACCGTTAATGATCTGTTCTGTTGAGTTTGACTGTGGAGATTGCTCTGTTTTCAACATTTGATTGTCGCGGTTCTGACTACGGCTTTGGTCGTTGTTACCGGGAGAAGAGATGTAAAGCTGGAGACGAGAGTTGTGAAGGATCACACATTGTTCGATATCAAGATGATCTTGAAGAACATTGCCTTGGAAGAAAAGGGTTTGTTTGGAAACTGGTATACGTTGATACTTCTCGATCTTCTTTTTGATCTCTAACACTGTATCCCAGTAACCTACTTCAATGCAGAACGATGAGCCTTTCTGAGTCTCGAAGAACACATCCATAATTGTATCAATGGTGTTTCAATTTTCAGTGGAGACTGATGAAGAAGAGAGAGAAGTGAGAGAAGACAATGTCAACTTCGGACTTTTTGTAACTAAAGTTCCGCAGAATGTATTAACTAAATAACCTATTTCCATGGGATCTTATT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

358

Start:

933277  

End:

933634

Strand:

-

>scaffold33|size1474841_LTR-Pao_51

GAAACACTTGATACAATTATGAAGCTTTTGGTCTGAGATTCTGAGTGGCTCATCATTCGAGATTGAAGTGGATTATAGGGATACAATGTTAGAGGTCAAACAGAAGATCGAGGAGTCTCAACGTATCCCAGTTTCGAAACAAACACTTATCGTCGACGGCGTTGTTATTCTTCGAGAGGATCTGAACCTCGAACAATGCCAGATCGTTCACAATTCTCATCTCCAACTCGACGTATCTGCTGACGATAACCCTAATCACAACGACGATCAAATGCCACAAACGGAGCAATCTCCAGCATCATGGATTTCAGTTGAAGAGTACTTTTTGAGGCAAGATTGGCCTTTGACAGCCGATGAG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

435

Start:

942079  

End:

942513

Strand:

-

>scaffold33|size1474841_LTR-Pao_52

CGAAACTTTCTTTACAAAACTCTCACTTTCTCTCTCGCTCTCTCTCTTTTCTTGACTCCATTGCATTGATCTTGAAACACCATTGATACAGTTATGAAGTTTCTCGTCGAGGTTCTGTGTGGCCCATCGTTCGAAATTGAAGTTGATAACACAGATACATTGTTAGAGGTCAAACAGAAGATCGAGAAGTCTCAACGTATCCCTGTTTCTAACCAAACCCTTATCGTCGACGGCGCTTACATTCTTCGAGAGGATCTTAACGTCGAACAATGCCAGATCGTTCAAAATTCTCGTCTAGAACTCGATGTCTCTGCTGACGATAATCCTACTCACAACAGCGACGATCAAATGCCGCAAACCGAGCCATCTCCAGCACCGTGGATTTCAATTGAAGAGTACTTTGAGGGGCAAGGTTGGCCTTTGACAGCCGAAGAG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

113

Start:

942595  

End:

942707

Strand:

-

>scaffold33|size1474841_LTR-Pao_53

AGCAGCAAGAATCAAGTGCTTCATCAAACAGAGCAATCTCCACCGTCAAACTCAACAAGACAGATCATCACCGGTCATCAAGATTCGCCTGTGACGGTTGGGAGCAGCAGCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

94

Start:

942700  

End:

942793

Strand:

-

>scaffold33|size1474841_LTR-Pao_54

AGCAGCAAGAATCAAGTGCTTCATCAAACCGATCAATCTCCACCGTCAAACTCAGCAGGACAGATCATCACCGGTCATCAAGATTCGACTGTGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

320

Start:

942787  

End:

943106

Strand:

-

>scaffold33|size1474841_LTR-Pao_55

ACTGTGACGGTTAATGTGCCTCAAACAGAGCAATCTCCACCGGTGCCATCAGACTCAGTCAAAGAGTTCACTAACATTCAAGAGTCCCCTGTTGATGTGGGGAGCAACATAGAAGTCCCGAAGAAGAGGATTACAGTAATTGTGGTTACATATTCCGGTCAGAGTCTTTTTGTGAGAGTGAACACGACCGATCCGGTGAATATACTGAGAAGGCAGTTGGTTCAGAGTCGACGAGAGGGACGTATAAGTCTGCCTCAAGAAGAGTATCTCTTTATGAACCAACAAAATGTAGTAATGAACGAAGATGAGTCCTTTTCGTG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

435

Start:

953958  

End:

954392

Strand:

-

>scaffold33|size1474841_LTR-Pao_56

CGAAACTTTCTTTACAAAACTCTCACTTTCTCTCTCGCTCTCTCTCTTTTCTTGACTCCATTGCATTGATCTTGAAACACCATTGATACAGTTATGAAGTTTCTCGTCGAGGTTCTGTGTGGCCCATCGTTCGAAATTGAAGTTGATAACACAGATACATTGTTAGAGGTCAAACAGAAGATCGAGAAGTCTCAACGTATCCCTGTTTCTAACCAAACCCTTATCGTCGACGGCGCTTACATTCTTCGAGAGGATCTTAACGTCGAACAATGCCAGATCGTTCAAAATTCTCGTCTAGAACTCGATGTCTCTGCTGACGATAATCCTACTCACAACAGCGACGATCAAATGCCGCAAACCGAGCCATCTCCAGCACCGTGGATTTCAATTGAAGAGTACTTTGAGGGGCAAGGTTGGCCTTTGACAGCCGAAGAG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

889

Start:

968365  

End:

969253

Strand:

+

>scaffold33|size1474841_LTR-Pao_57

AGCTGTGAAACGATAATACAATTGGAAGAAAGCAAGAAACTTCAATAAAAGAATGAAAGCTATAAGCAAGGATGAGGTTGCAGAGAGTTAAAGCTTGAAAATTGTAGGTATTAAGAGCCACCGGAAACACTTCCGTTGAAAATCTCAATTGTGTCGCCGTGATCAACACGGTGCCACCGGAAAGATCGGTCGTCGTCCATTACATTCTGTTTGTATATAAAGAAATAACCTTCTTTAGGCAGAGTTAATTGAAACCTCTGTTGAATCTTAGCCAGCTCTTTCCTTAATTCTCCAACGTTATCCCCTGCGTTCACCTCCACTGGAATCTTCCTTGTCCCGCATTTCGGCAGCACCATTACTCTCAGTATCTTCGGGTTGTTGTTGTTGTTGCTCATTGCCATCATCACAGTTGAATCTTGAAGACCGTTAATGATCTGTTCTGTTGAGTTTGACTGTGGAGATTGCTCTGTTTTCAACATTTGATTGTCGCGGTTCTGACTACGGCTTTGGTCGTTGTTACCGGGAGAAGAGATGTAAAGCTGGAGACGAGAGTTGTGAAGGATCACACATTGTTCGATATCAAGATGATCTTGAAGAACATTGCCTTGGAAGAAAAGGGTTTGTTTGGAAACTGGTATACGTTGATACTTCTCGATCTTCTTTTTGATCTCTAACACTGTATCCCAGTAACCTACTTCAATGCAGAACGATGAGCCTTTCTGAGTCTCGAAGAACACATCCATAATTGTATCAATGGTGTTTCAATTTTCAGTGGAGACTGATGAAGAAGAGAGAGAAGTGAGAGAAGACAATGTCAACTTCGGACTTTTTGTAACTAAAGTTCCGCAGAATGTATTAACTAAATAACCTATTTCCATGGGATCTTATT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

795

Start:

969359  

End:

970153

Strand:

+

>scaffold33|size1474841_LTR-Pao_58

TNGAAAATTGTAGGTATTAAGAGCCACCGGAAACACTTCCGTTGAAAATCTCAATTGTGTCGCCGTGATCAACACGGTGCCACCGGAAAGATCGGTCGTCGTCCATTACATTCTGTTTGTATATAAAGAAATAACCTTCTTTAGGCAGAGTTAATTGAAACCTCTGTTGAATCTTAGCCAGCTCTTTCCTTAATTCTCCAACGTTATCCCCTGCGTTCACCTCCACTGGAATCTTCCTTGTCCCGCATTTCGGCAGCACCATTACTCTCAGTATCTTCGGGTTGTTGTTGTTGTTGCTCATTGCCATCATCACAGTTGAATCTTGAAGACCGTTAATGATCTGTTCTGTTGAGTTTGACTGTGGAGATTGCTCTGTTTTCAACATTTGATTGTCGCGGTTCTGACTACGGCTTTGGTCGTTGTTACCGGGAGAAGAGATGTAAAGCTGGAGACGAGAGTTGTGAAGGATCACACATTGTTCGATATCAAGATGATCTTGAAGAACATTGCCTTGGAAGAAAAGGGTTTGTTTGGAAACTGGTATACGTTGATACTTCTCGATCTTCTTTTTGATCTCTAACACTGTATCCCAGTAACCTACTTCAATGCAGAACGATGAGCCTTTCTGAGTCTCGAAGAACACATCCATAATTGTATCAATGGTGTTTCAATTTTCAGTGGAGACTGATGAAGAAGAGAGAGAAGTGAGAGAAGACAATGTCAACTTCGGACTTTTTGTAACTAAAGTTCCGCAGAATGTATTAACTAAATAACCTATTTCCATGGGATCTTATT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

346

Start:

971005  

End:

971350

Strand:

-

>scaffold33|size1474841_LTR-Pao_59

GAAAGACTTGATACAATTATGAAGTTTCTGGTCGAGATTCTGAGTGGCTCATCATTCGAGATTGAAGTCGATTATAGGGATACAATGTTAGAGATCAAACACAAGATCGAGGAGTCTCAACGTATCCCAGTTTCGAAACAAACCCTTATCGTCGACGACGTTGTTATTCTTCGAGAGGATCTGAACCTCGAACAATGCCAGATCGTTCACAATTCTCATCTCCAACTCGACGTATCTGCTGACGATAACCCTAATCACAACGACGATCAAATGCCACAAACGGAGCAATCTCCAGCACCATGGATTTCAGTTGAAGAGTACTTTTTGAGGCAAGATTGGCCTTTGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

212

Start:

971872  

End:

972083

Strand:

+

>scaffold33|size1474841_LTR-Pao_60

CTGTATCCCAGTAACCCACTTCAATGCAGAACGATGAGCCTTTCTGAGTCTCGAAGAACACATCCATAATTGTATCAATGGTGTTTCAATTTCAATGGAGACTGATGAAGAAGAGAGAGAAGTGAGAGAAGACAATGTCAACTTCGGACTTTTTGTAACTAAAGTTCCGCATGATGTATTAACTAAATGACCTATTTCCATGGGATCTTATT