ID Class Order Superfamily Length Start End Strand View
scaffold33|size1474841_LTR-Pao_21 RetrotransposonsLTRLTR-Pao390344870345259-
scaffold33|size1474841_LTR-Pao_22 RetrotransposonsLTRLTR-Pao106345235345340-
scaffold33|size1474841_LTR-Pao_23 RetrotransposonsLTRLTR-Pao435349115349549-
scaffold33|size1474841_LTR-Pao_24 RetrotransposonsLTRLTR-Pao462352037352498-
scaffold33|size1474841_LTR-Pao_25 RetrotransposonsLTRLTR-Pao85354462354546-
scaffold33|size1474841_LTR-Pao_26 RetrotransposonsLTRLTR-Pao323356447356769-
scaffold33|size1474841_LTR-Pao_27 RetrotransposonsLTRLTR-Pao132357572357703-
scaffold33|size1474841_LTR-Pao_28 RetrotransposonsLTRLTR-Pao417365029365445-
scaffold33|size1474841_LTR-Pao_29 RetrotransposonsLTRLTR-Pao95365421365515-
scaffold33|size1474841_LTR-Pao_30 RetrotransposonsLTRLTR-Pao492365523366014-
scaffold33|size1474841_LTR-Pao_31 RetrotransposonsLTRLTR-Pao678366526367203-
scaffold33|size1474841_LTR-Pao_32 RetrotransposonsLTRLTR-Pao408368811369218-
scaffold33|size1474841_LTR-Pao_33 RetrotransposonsLTRLTR-Pao450376042376491-
scaffold33|size1474841_LTR-Pao_34 RetrotransposonsLTRLTR-Pao419383224383642-
scaffold33|size1474841_LTR-Pao_35 RetrotransposonsLTRLTR-Pao87383627383713-
scaffold33|size1474841_LTR-Pao_36 RetrotransposonsLTRLTR-Pao490383990384479-
scaffold33|size1474841_LTR-Pao_37 RetrotransposonsLTRLTR-Pao759385428386186-
scaffold33|size1474841_LTR-Pao_38 RetrotransposonsLTRLTR-Pao427390228390654-
scaffold33|size1474841_LTR-Pao_39 RetrotransposonsLTRLTR-Pao421394188394608-
scaffold33|size1474841_LTR-Pao_40 RetrotransposonsLTRLTR-Pao289428746429034-

< 1 2 3 4 > Total 4


Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

390

Start:

344870  

End:

345259

Strand:

-

>scaffold33|size1474841_LTR-Pao_21

CCTCTCTCTCTCTCTCTTCTTCACAGTCTCCATTGATCTTGAAACACCATTGATACAATTATGAAGGTGATCGTCGATACTCAAAGTGGTTCATCGTTCTCCATTGGTTTTGATATTTGGGATACAGTGTTAACGATTAAACAGAAGATCGAGAAGTCTCAAGGTATCCCTGTTTTCAAACAAACCCTTTCCTTCCAAGGCAATGTTCTTCAAGACTATCTTGATTACTTTGAATGCCAGTTCCTCGACAACTCTCGTATTCTTCTCTCTATCTCTCCTGACGATAACACTACTCAGAACAACAACGATCAAGTGCCATCAAATCCAATTCATGAGTTCGTTAACATTCAAGATTGGCCTGTGATGAGCAACAACGATCAAGTGCCTGAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

106

Start:

345235  

End:

345340

Strand:

-

>scaffold33|size1474841_LTR-Pao_22

GAGCAACAACGATCAAGTGCCTGAAACCGAGGAATCTCCAATGACATTAGAATCAAAGAAAGAGTTCTTCGAGATTCAAGATTCGCCGGAGGGCAGAAACAATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

435

Start:

349115  

End:

349549

Strand:

-

>scaffold33|size1474841_LTR-Pao_23

TTCTCTCTGTTTTTCACCAGTCTCCATTGATCTTGTAACACCATTGATACAATTATGAAGGTGGTCGTCGATATTCAAAGTGGCTCATCGTTCTCCATTGATGTTGATTTCTGGGATACAGTGTTAACGATTAAACAGAAGATCGAGAAGTCTCAAGGTATTCCTGTTTTCAAACAAACCCTTTTCTTGCAAGGCAAGGTTCTTCAAGACCATCTTGATTACTTTGAATGTCAGTTCCTCCACAACTCTCGTCTCCTTCTCTCCATCTCACCTGACGATAACACAAATCAGAACAACAACGATCAAGTGCCTCATCAAACACAGGAATCTCCATCAGCACCAACAAATCCAATTCATGACGAGTTCGTTAACAATCAAGATTTGCCTGTGAGGCTCTGTGATGAGCAACAACGATCAAGTACGTAAACCCGAGGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

462

Start:

352037  

End:

352498

Strand:

-

>scaffold33|size1474841_LTR-Pao_24

AACCGAGCAATCTTCACCGTCAGACTCAGTCAAAGAGATCCCTATAAGTTTAGATTCGGCTTTTAAAAAGAAGATCAAGACCATCCCGGTGAATATGACAGTAATGGTGCAACAATTTAAAGAGACCAGGAGGATTCCATTGGAGGTTAACGCACTTGATAACGTTGAAGAACTGAAGAAAGAGCTGGTTAAGAGGCAAGAGAGAGGTGAGTTTAATCTGCCTGAAAGGTATTTCTTTTTACACAAAGAGGGTCTAATATTAGTCGAAAATCGGTCATTCTGGAGGAACGGTGTTGTTCACGGTGATACGATTGAGATTCTCCCCGGATATGTTACCAATGACGACAAATGCCGGCGGCTCCACCATCTTAAGTGGAAACATTAATCGAGCTTAAACTCTGTGCTGTCTCCTCTTTTCTTATAGCTTTTAGTCTTTCTTCAAGTTTTCTTGCTTTGTTCAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

85

Start:

354462  

End:

354546

Strand:

-

>scaffold33|size1474841_LTR-Pao_25

TCATTTCTCTCTCTCTCTTCTTCAACAGTTTTTATTGATCTTGAAATACCGCTGATACAATTATGAAGTTGTTCTTCAATAATCA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

323

Start:

356447  

End:

356769

Strand:

-

>scaffold33|size1474841_LTR-Pao_26

TGTCTCTCTCTCTTTCTCTCTTCTTCAACAGTCTCCATTGATCTTGAAACACCATTGATACAATTATGAAGGTGGTCATCGATACTCAAAGTGGCTCAGTGTTCTCCATTGATGTTGATTTCTGGGATACAGTGTTAACGATTAAACAGAAGATAGAGAAGTCTCAAGAAATCCCTGTTTTCAAACAAACCCTATTCTTCCAAGGCAAGGTTCTTCAAGATTATCTTCATTACATTGAATTCCAGTACCTCCACAACTCTCGTCTCCTTCTCTCCATCTCTCCTGACGATAACACTAATCAGAACAACAACGATCAAGCCCTC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

132

Start:

357572  

End:

357703

Strand:

-

>scaffold33|size1474841_LTR-Pao_27

AAGAGAGGTTTCAGTTAAGTCTGCTTCAAGAAGGCTATTTCTTTATATATAAACAGAGAATGTAATGGATGATGACAGGTCTTTCCGGTGACAATTGAGATTTTCAACGCAAGTGTTTCCGGTGGCTCTTAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

417

Start:

365029  

End:

365445

Strand:

-

>scaffold33|size1474841_LTR-Pao_28

TTCTCTCTCTTTTTCACCAGTCTCCATTGATCTTGAAACACCATTGATACAATTATGACGGTGGTCGTTGATATTCAAAGTGGCTCATCGTTCTCCATTGATGTTGATTTCTGGGATACAGTGTTAACGATTAAACAGAAGATAGAGAAGTCTCAAGGTATTCCTGTTTTCAAACAAACCCTTTTCTTGCAAGGCAAGGTTCTTCAAGACCATCTTGATTACTTTGAATGTCAGTTCCTCCACAACTCTCGTCTCCTTCTCTCCATCTCACCTGACGATAACACAAATCAGAACAACAACGATCAAGTGCCTCATCAAACCCAGGAACCTCCATCAGCACCAACAAATCCAATTCATGACGAGTTCGTTAACAATCAAGATTTGCCTGTGATGAGCAACAACGATCAAGTACCTAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

95

Start:

365421  

End:

365515

Strand:

-

>scaffold33|size1474841_LTR-Pao_29

GAGCAACAACGATCAAGTACCTAAAAGCGAGGAATCTCCAGTGACGTTAGAATTAAGGAAAGAGTTCTTTGGGATTCAATATTTGCCGCCTGTGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

492

Start:

365523  

End:

366014

Strand:

-

>scaffold33|size1474841_LTR-Pao_30

AAGCAGAAGAAACAGGAATCAAGTGGTTCAAACCGAGCAATCTTCACCGTCAGACTCACACAAAGAGATAATTAGAATTTCAGATTCGCCTGTTAAAAAGAAGATCAAGACCAGCCCGATGAATATGACAGTAATGGTGCAGCCATTTGAAGAGACCAGGAGGATTCCATTGGAGGTTAACGCACGTGATAACGTTGAAGAAATGAGGAAAGAGCTGGTTAAGATGCAACAGAGGGGTGAGTTAAATCTGCCCCACGAAGGGTATTTCTTTATACACAAACAGGCTGTATTAGACGAGGATCAGTCATTCTGGTGGAACGGTGTTGCTCACGGTGATACGATTGAGATTTTCCGCGGATATGTTACCAATGACCAATCGCAGCTCCACAATCAGAGGTGGAGGCCGAACATTAATCGAGCTTAAACTGTGTGCACTCTCCTCTTTTCTTATAGCTTTTTAGTCTGTCTTCAAGTTTTCTTGCTTTGTTCAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

678

Start:

366526  

End:

367203

Strand:

-

>scaffold33|size1474841_LTR-Pao_31

TCACTTTCTCTCTCTCTTCTTCAACTGTCTCCATTGATCTTGAGACACCATTGATACAATTATGAAGTTGTTCTTCAAGAATCCGAGTGGCTCATCGTTCGAGATTGAAGTGGGTTACAAGGATACACTGTTAGAGGTCAAACAGAAGATCGAGAAGTCTCACCGTATCCATGTTTCCAAATAAACCCTTTTCTTCGACGACATGGTTCTTCAAGGCCATCTTGATATCGAACAATGCCGGATCGTCCAAGAATCTCGTCTCCAACTCTTCGTCTCTGCTGACCATAACTCTAATCACAATCAATCCGAGCAATCTCCTCCACCGTCAAACTCAACAGAAGAGATCATCGGCGGTCATCAAGATTCGACTGTAACATTTCAAATCGAGCAATCACCATCGTCAAACTCAGTCGAAGAGATGATGATCACTAACATTCAAGATTCGTCTGTGAAGGAAAGGACCCGGAAGAAGAGGATGGTCGTATCCGTTTTGCCATATTCCGGTGAGAGTAAAGTGCCAAGGAGATTCCGGTGGCTGCGAAGATGAACGATAACGTCAAGGAACTGAGGAACGAGTTGGTTAAGATTGAAGAGACGGGTGAGTTAAATCTGCCACAAGAAGGGTATTTTCTTTTACACAAGAACAGAGTATTGAACGAGAATCAGTCATTCTCGGTG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

408

Start:

368811  

End:

369218

Strand:

-

>scaffold33|size1474841_LTR-Pao_32

TCTCTCTCTTTTTCACCGGTCTCCACTCTCCATTGATCTTGAAACACCATTGATACAATTATGAAGGTGGTTGTAGATACTGAAAGTGGCTCATCGTTCTCCATTGATGTTGGTTTCTTGGATAGAGAGTTAACGATTAAACAGAAGATCGAGCAGTCTCAAGGTATCCCTGTTTTCAAACAAAACCTTTTCTTCCAAGGCAAGGTTCTTCAAGACCATATTGATTACTTTGTACGCCAGTGCCTCCCCAAATCTCGTCTCCTTCTCTTCGTCTCACGTGACGATAACACTAATCAGAACAACAACGATCAAGTGCCTCATCAAACCCAGGAATATCCATCAGCACCATCAAATTCAATTCATGAGTTCGTTACAATCAAGATTGGCCTGTGATGAGCAACAACGATC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

450

Start:

376042  

End:

376491

Strand:

-

>scaffold33|size1474841_LTR-Pao_33

CAAACCGAGCAATCTTCACCGTCAGACTCAGTCAAAGAGATCCCTATAAGTTTAGATTCGGCTTTTAAAAAGAAGATCAAGACCATCCCGGTGAATATGACAGTAATGGTGCAACAATTCCATTGGAGGTTAACGCACTTGATAACGTTGAAGAACTGAGGAAAGAGCTGGTTAAGAGGCAAGAGAGAGGTGAGTTAAATCTGCCTGAAAGGTATTTCTTTTTACACAAAGAGGGTCTAATATTAGTCGAAAATCGGTCATTCTGGAGGAACGGTGTTGTTCACGGTGATACGATTGAGATTCTCCCCGGATATGTTACCAATGACGACCAATGCCGGCGGCTCCACCATCTTAAGTGGATACATTAATCGAGCTTAAACTCTGTGCTGTCTCCTTTTTTCTTATAGCTTTTAGTCTTTAATTTCTTCAAGTTTTCTTGCTTTCTTCAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

419

Start:

383224  

End:

383642

Strand:

-

>scaffold33|size1474841_LTR-Pao_34

TGTCTCTCTCTCTTTCTCTCTTCTTCAACAGTTTCCATTGATCTTGAAACACCATTGATACAATTATGAAGGTGGTCATCGATACTCAAAGTGGCTCAGTGTTCTCCATTGATGTTGATTTCTGGGATACAGTGTTAATGATTAAACAGAAGATCGAGAAGTCTCAAGAAATCCCTGTTTTCAAACAAACCCTATTCTTTCAAGGCAAGGTTCTTCAAGATTATCTTCATTACTTTGAATTCCAGTACCTCCACAACTCTCGTCTCCTTCTCTCCATCTCTCCTGACGATAACACTAATCAGAACAACAACGATCAAGTGCATGTGCCTCAAACGGAGCAATATTCATCAGCACCATTAAATCCTATTGATGAGTTCGTTAACAATCAAGGTTGGCCTGTGATGAGCAACAGCGATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

87

Start:

383627  

End:

383713

Strand:

-

>scaffold33|size1474841_LTR-Pao_35

GAGCAACAGCGATCAAGTACTTCAAACGGAGGAATCTCCATTGACGGTAGAATCATGGAAAGAGTTCCTTGGGGTTCAAGATTCGCC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

490

Start:

383990  

End:

384479

Strand:

-

>scaffold33|size1474841_LTR-Pao_36

AAGCAGAAGAAACAGGAATCAAGTGGTTCAAACCGAGCAATCTTCACCGTCAGACTCACACAAAGAGATAATTAGAATTTCAGATTCGCCTGTTAAAAAGAAGATCAAGACCAGCCCGATGAATATGACAGTAATGGTGCAGCCATTTGAAGAGACCAGGAGGATTCCATTGGAGGTTAACGCACGTGATAACGTTGAAGAAATGAGGAAAGAGCTGGTTAAGATGCAACAGAGGGGTGAGTTAAATCTGCCACACGAAGGGTATTTCTTTATACACAAACAGGCTGTATTAGACGAGGATAAGTCATTCTGGTGGAACGGTGTTGCTCACGGTGATACGATTGAGATTTTCCGCGGATATGTTACCATTGACCAATCGCAGCTCCACAATCATAAGTGGTCGAAACATTAAACTAGCTTAAACTTTGTGCAATCTCCTCTTTTCTCATAGCTTTTTAATCTTTCTTCAAGTTTTCTTGCTTTGTTCAAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

759

Start:

385428  

End:

386186

Strand:

-

>scaffold33|size1474841_LTR-Pao_37

TCACTTTCTCTCTATCTTCTTCAACAGTCTCCATTGATCTTGAAACACCATTGATACAATTATGAAGTTGTTCTTCAAGAATCAGAGTGGCTCATCGTTCGAGATTGAAGTGGATTACAGGGATACACTGTTAGAGGTCAAACAGAAGATCGAGAAGTCTTACCGTATTCCTGTTTCCAAACAAACCCTTTTCTTCGACGGCATGGTTCTTCAAGACCATCTTGATATCGAACAATGCCGGATCGTCCAAGAATCTCGTCTCCAACTCTTCGTCTCTGCTGACTATAACCCTAATCACACTCAAACCGAGCAATCTCCCCCACCGACAAACTCAACAGAACAGATCATCGACAACCTTACTGTGACGGTTCAAACCGAGCAATCTCCATCGTCAAACTCAGTCATGATCACTAACATTGAAGAGCCGTCTGTGAAGGAAAGGACACGGAAAAAGAGGATGGTCGTTTACGTTTTGCCATATTCCGGCGAGAGTAAAGCTGCCAAGGAGGTTCCGGTGGCTGTGAATGTGAAGATGAACGATAACGTCAAAGAACTGAGGAACGAGTTGGCTAAGACTGAAGAAAGGGGTGAGTTAAATCTGCCTCAAGAAGGGTATTTTCTTATACACAAAAACAGAGTATTGAACGAGAATCAGTCACTCTCGGTCGTTGGTGTTGATAACGACGATAGAATTGAGATCCTTCCTACACATCTTACTCGTGGCTCTTTTAACCTTGACTCTTAAGTCACAATTCTTTG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

427

Start:

390228  

End:

390654

Strand:

-

>scaffold33|size1474841_LTR-Pao_38

TCACTTTCTCCCTCTTTCTCAACAGTCTCCATTGATCTTGAAACACCAATACACCATTGATACAATTATGAAGGTGATCGTTGATACTCAAAGTGGTCCATCGTTCTCCATTGGTGTTGATTTCTGGGATACAGTGTTAACGATTAAAAAGAAGATCGAGAAGTCTCAACGTATCCCTGTTTTCAAACAAACCCTTTTCTTCCAAGTTATGGTTCTTCAAGACCATCTTCATACCTTTGTATGCCAGTTCCTCCACAACTCTCGTCTCTTTCTCTTCATCTCTCCTGACAATAACACAAATCAGAACAACAACGATCAAGTGCCTCAAACCGAGCAATATCCATCAGCACCATCAAATCCAATTCATGACGAGTTCGTTAACAATCAAGATTTGCCTGTGATGAGCAAAAACGATCAAGTACTTGAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

421

Start:

394188  

End:

394608

Strand:

-

>scaffold33|size1474841_LTR-Pao_39

CATCACTTTCTCTCTCTCTCTCTCTTTTTCACCTGTCTCCATTGATCTTGAAACACCATTGATACAATTATGAAGGTGGTATTCAAAGTGGCTCATCGTTCTCCATTGATGTTGATTTCTGGGATACTGTGTTAACGATTAAACAGAAGATCGAGAAGTCTCAAGAAATCCCTGTTTTCAAACAAACCCTATTCTTCCAAGGCAAGGTTCTTCAAGATTATCTTCATTACTTTGACTTCCAGTACCTCCACAACTCTCGTCTCCTTCTCTCCATCTCTCCTGACAATAACACTAATCATAACAACAACGATCATGTGCCTCAAACCGATCAGTCTCCATCAGCACCATCAAATCCAATTCATGAGTTCGTTAACAATCAAGATTTGCCTGTGATGAGCAACAACGATCAAGTACCTGAGGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

289

Start:

428746  

End:

429034

Strand:

-

>scaffold33|size1474841_LTR-Pao_40

TCACTTTCCCGCTCTCTTCTTCAACAGTCACCATTGATCTTGAAACACCACTGATACAAACAGAAGATCGAGAAGTCTCACCGTATCCTGTTTCCAAACAAACCCTTTTCTTCGACAGCATGGTTCTTCAAGACCATCTTGATATCGAACAATGCCAGATCTTCCAAGAATCTCGTCTCCAACTCATCGTCTCTGCTGACCATAACCCTAATCACAATCAATCCGAGCAATCTCCTCCACCGTCAAACTCAACAGAAAATGTCATCAACCCTCATCAAGATTCGACTGT