TBGR-Browse-Bju-LTR.LTR-Gypsy

ID	Class	Order	Superfamily	Length	Start	End	Strand
A01_LTR-Gypsy_41	Retrotransposons	LTR	LTR-Gypsy	172	13786406	13786577	+
A01_LTR-Gypsy_42	Retrotransposons	LTR	LTR-Gypsy	136	13787322	13787457	+
A01_LTR-Gypsy_43	Retrotransposons	LTR	LTR-Gypsy	88	13787507	13787594	+
A01_LTR-Gypsy_44	Retrotransposons	LTR	LTR-Gypsy	331	13807075	13807405	-
A01_LTR-Gypsy_45	Retrotransposons	LTR	LTR-Gypsy	148	13809616	13809763	-
A01_LTR-Gypsy_46	Retrotransposons	LTR	LTR-Gypsy	871	13810396	13811266	-
A01_LTR-Gypsy_47	Retrotransposons	LTR	LTR-Gypsy	132	13814834	13814965	-
A01_LTR-Gypsy_48	Retrotransposons	LTR	LTR-Gypsy	278	13815236	13815513	-
A01_LTR-Gypsy_49	Retrotransposons	LTR	LTR-Gypsy	200	13835680	13835879	+
A01_LTR-Gypsy_50	Retrotransposons	LTR	LTR-Gypsy	497	13836619	13837115	+
A01_LTR-Gypsy_51	Retrotransposons	LTR	LTR-Gypsy	652	13844787	13845438	+
A01_LTR-Gypsy_52	Retrotransposons	LTR	LTR-Gypsy	153	13870650	13870802	-
A01_LTR-Gypsy_53	Retrotransposons	LTR	LTR-Gypsy	157	13962927	13963083	+
A01_LTR-Gypsy_54	Retrotransposons	LTR	LTR-Gypsy	121	13985527	13985647	+
A01_LTR-Gypsy_55	Retrotransposons	LTR	LTR-Gypsy	101	13985912	13986012	+
A01_LTR-Gypsy_56	Retrotransposons	LTR	LTR-Gypsy	92	13986221	13986312	+
A01_LTR-Gypsy_57	Retrotransposons	LTR	LTR-Gypsy	143	13986329	13986471	+
A01_LTR-Gypsy_58	Retrotransposons	LTR	LTR-Gypsy	227	14004720	14004946	+
A01_LTR-Gypsy_59	Retrotransposons	LTR	LTR-Gypsy	709	14038254	14038962	+
A01_LTR-Gypsy_60	Retrotransposons	LTR	LTR-Gypsy	193	14093276	14093468	+

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

172

Start:

13786406

End:

13786577

Strand:

+

>A01_LTR-Gypsy_41

CTAGGACATAAAGTGTCTGCTGCTGGTATAGAAGTACATCGGGCGAAGATTGAGGTAGAGCTACCTGCCTGCACCCACGAACGTAAAAGACGTGAGAAGTTTTCTCGGGCATGCCGGATTTTATAGGAGGTTCATACAAGTTTTTTAGCAAAATCGCTAGACCTCTCACCTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

136

Start:

13787322

End:

13787457

Strand:

+

>A01_LTR-Gypsy_42

CTATGCCAGTCGAACACTCGACGAGGCACAAAGGAATTACGCAACAACAGAAAAAGAATTGCTTGCCATAGTTTATGCATTTGAAAAGTTCTGCCAATACCTGGTTGGTTCGCGAGTCATCGTTCATACTGATCAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

88

Start:

13787507

End:

13787594

Strand:

+

>A01_LTR-Gypsy_43

TGCGATGGATCTTTCTACTTCAAGAATTCAACATCGAGATTAAAGATAAAAGAGGAGTAGAAAATGGAGTTACAGATCATCTTTCCCG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

331

Start:

13807075

End:

13807405

Strand:

-

>A01_LTR-Gypsy_44

CAGAGGTGTCCTACACGGCCTACCATACAAAGCCTCATATGGCGACATGCCAATGCTGGTATGGAAGCTATTGTTGTAAGCAAATTCTACCAAAGGTAAGTGTTTCTCCCAAGACTTTCCCGTGTCTAAAACACATGCCCTTAGCATATCCTCCAAGGTCTGAATCGTCCTCTCGGACTGTCCATCTGTCTGAGGATGATAGGATGTACTCATGTTTACTCTGGTTCCCAAGGCTTTCTGGAAAGCCTGCCAGAAGTAAGATGTAAACTATGGATCTCTATCCGAGACAATGCTTGCTGGAACACCATGCAACCGCACTATCTCATCCATG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

148

Start:

13809616

End:

13809763

Strand:

-

>A01_LTR-Gypsy_45

ATGAAATGTGCCATTTTAGAGAATCTATCAACAACCACAAAGATAGAATCCTTTCCAGTCCTAGTTCTAGGCAAACCCATAACAAAATCCATAGATATATCATTCCAAGGATGAGTAGGAATAGGCAAAGGAGTATACAAACCGTGAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

871

Start:

13810396

End:

13811266

Strand:

-

>A01_LTR-Gypsy_46

TAAGCAATAGGTCTTTTATCCTGCATCAACACAGCACCAATTCCAATTCCTGAGGCATCACATTCTATTTCAAATGTTTTAGAAAAATCAGGAAGTATGAGAAGAGGAGATTGAGTAAGCTTCTCTTTAAGGAGTTGGAATGCGGCTTCCTGAGCTTCTCCCCACTTGAATCCTACATCCTTCTTGATTATCTCAGTTAGGGGAGCTGCTAGAGTGCTGAAATCCTTCACAAAGCGCCTATAGAAACCTGCCAGTCCATGAAAACTCCTTACTTCTCCCACTGTAGTTGGACTCGGCCACTCTTGTATTGCTTTGATCTTTTCCTGATCCACTTTTACACCATCTGCACTTACAACAAAACCTAGAAAGACCAAGTTATCTGTGCAAAAAGTGCACTTCTTTAGATTGGCATATAGCTTTTCCTTTCTCAAAACATCCAAAACAGCCCTAAGATGTTCTATATGATCTTCTAAGCATTTGCTGTAAACTAAGATATCATCAAAGTACACAACAACAAAGATGCCTATGAAAGACCTAAGAATATGATTCATCAATCTCATGAATGTACTAGGCGCATTGGTTAATCCAAATGGCATAACTAACCATTCATACAAGCCATGTTTAGTTTTAAATGCAGTTTTCCACTCATCTCCTTCTTTCATCCTAATCTGATGATATCCACTTTTCAAGTCTATCTTAGAAAAGATGCAAGAACCATGCAATTCATCAAGCATATCATCTAATCTAGGAATAGGGTGGCGATACTTCACTGTTATGTTGTTGATTGCTCTACAATCAACACACATGCGCCAGCTCCCATCTTTCTTTGGCACAAGGAGCACTGGAACTGCACAAGGACTCAAACTTTCTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

132

Start:

13814834

End:

13814965

Strand:

-

>A01_LTR-Gypsy_47

CCATCTCCTCTGCTTAAGTTTAACTCTGGCTGAGTGAATATATACTTTAGACTTTTATGGTCTGTAAGTAATTGCACTTTGGCTCCATACAGATATGATCTCCATATCTTCAAGGCAAACACCACAGCTGCC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

278

Start:

13815236

End:

13815513

Strand:

-

>A01_LTR-Gypsy_48

CTCGAGAACCCCTTGACATATTTCCGGTAGTAGCCGGCCAATCCCAAGAAGTTTCGTACTTCTGTAGCATTCTTTGGCTGAGGCCATTCCCGTATACACTTTATCTTTTCTTGATCAATAGACACTCCTTCATCAGACACTGTATGTCCAAGAAAACCAATGCTCTTCTGCCAGAAATTACACTTGCTTAACTTAGCAAAGAGCTTCTGCTCCCTCAAGCGTTGCAGCACTGCCCGAAGATGCCTCTCATGATCTTCCTTTGTCTTAGAATACACGAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

200

Start:

13835680

End:

13835879

Strand:

+

>A01_LTR-Gypsy_49

AGTCTCGGTCCCTGTGCCGTGCCTGTTCTACTTGTACCAAAGAAGGATGGTTCCTGGAGGATGTGTGTTGACTTTCGTGCCATAAACAACATCACGGTAAAGTATCGACATCCTATTCCTCGTCTTGATGATATGCTTGATGAACTCCATGGTTCTAAGTACTTTTCTAAGATAGATTTGAGAAGTGGCTATCATCAGAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

497

Start:

13836619

End:

13837115

Strand:

+

>A01_LTR-Gypsy_50

GGTTTGTACTCAGCCCTACCCATTCCCTCTCATCCTTGGGTAGACATTTCTATGGATTTTGTGCTTGGTTTGCCTAGGTCTAAAGCTGGACGATACTCTATCTTTGTGGTTGTTGATAGGTTCTCAAAAATGGCTCATTTCATTCCTTGTCACAAAACTGATGATGCTGTGCAAGTTGCAGATTTATTCTTTAAGGAAGTTGTTAGATTGCATGGAATGCCTAAGACCATTGTCTCTGATCGTGATGCTAAGTTCCTTAGCTATTTTTGGAAGACATTGTGGTCAAAGCTAGGTACTAGATTGATGTTTTCTACAACTTGTCATCCGCAAACTGATGGACAAACAGAAGTAGTTAATCGAACTTTATCTGCTTTGCTTAGATCTTTGGTTAAAAAGAATCTTAGGACTTGGGAAGAATGTTTGCCTCATGTTGAATTTGCTTATAACCATGCTTTGCATTCAGCTACTAAGTTTTCTCCTTTTGAGGTTGTTTATGG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

652

Start:

13844787

End:

13845438

Strand:

+

>A01_LTR-Gypsy_51

AAAGAAGGTGATGATGGAAAACGGCTTTTAAAACAAAACTAGGTTTGTATGAGTGGCTTGTTATGCCCTTTGGTCTCACTAATGCACCTAGTACTTTCATGCGCCTAATGAATCATGTCTTGAGGTCTTTATTGGTCATTTTGTTGTAGTTTACTTTGATGACATTCTTATTTACAGCAAAAGCTTGATGATCACAAACAGCACTTGAAATCGTTCTAGAGGTCCTTAGAAAGGAACGCCTGTTTGCTAACCTTGGAAAGTGTTCCTTTGGCACAGATCATGTGGTCTTTCTAGGTTTTGTTGTAGGTGCAGATGGCCTGAGAGTGGACGAGGAGAAGGTCCAAGCAATCCGGAACTGGCCGATCCGACCTCCATTGGTGAAGTAAGAAGTTTCCATGTGTCTAGCCGGCTTCTATCGAAGGTTTTTCCCAAACTTCAGCACCTTGGCCGCCCCTCTCACTGAAGTGATAAAGAAAAACGTTGGGTTCAAATGGGACAAACTCAGGAAGAGGCATTTGAAATCTTAAAGGGAAGTTGACTCAAGCCCCCTTACTTGTACTTCCAGATTTTTCTAAAGCTTTTGAAATGAATGTGATGCTTCTGGGTTGGTATTGGTGCTGTGTTGATGCAGGATGGAAAACCAGTGGCTTAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

153

Start:

13870650

End:

13870802

Strand:

-

>A01_LTR-Gypsy_52

TGACAAGCATGTCATCAATATAAACTTCCATCGTTTTTCCGAGTTGTTTGGAGAACATTCGGTTCACGAGTCGTTGATAAGTTGCACCAGCGTTTGAGGCCGAAGGGCATTACCTTATAGCAATAAGTTCCGCGATCGGTAATGAATGCAGTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

157

Start:

13962927

End:

13963083

Strand:

+

>A01_LTR-Gypsy_53

GGTATAGAAGTGGATCGAGCCAAAATTGACGTAATGACCGGTTTACCTGTACCCACAAACGTAAAAGATGTGAGAAGTTTTCTCGGGCATGTCGGATTTTATAGGAGGTTTATACAGGATTTCAGCAAAATTGCCAGACCACTCACAGCCCTCCTAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

121

Start:

13985527

End:

13985647

Strand:

+

>A01_LTR-Gypsy_54

TTTTCAAATTCCCATACATCCGGATGATCAAGAAAAGGCAACCTTTACATGCCCCTATGGAACATTTGCGTATCGCAGAATGCTATTTGGTCTTTGTAATGCTCCCGCCACTTTCCAACGT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

101

Start:

13985912

End:

13986012

Strand:

+

>A01_LTR-Gypsy_55

CCCAAAAATGTAAAAGACGTGCGAAGTTTTCTCGGACACGCCGGATTTTATAGGAGGTTTATACAAGACTTTAGAAAAATTGCTAGACCTTTAAATAACCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

92

Start:

13986221

End:

13986312

Strand:

+

>A01_LTR-Gypsy_56

CGTACGCTTGATGAAGCGCAACAAAATTATGCAACAACAGGAAAAGAACTACTCGCCGTAGTTTATGCATATGAAAAATTCCGTCAATATCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

143

Start:

13986329

End:

13986471

Strand:

+

>A01_LTR-Gypsy_57

ATAGTTCACACTGACCACGCTGCCATTAAATATTTGATGCAAAAGAAAGATGCAAAACCTCGACTCATACGCTGGATTTTACTACTCCAAGAGTTTGATATTGAATTTAAAGATAAACAAGGAGTAGATAATGGAGTCGCTGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

227

Start:

14004720

End:

14004946

Strand:

+

>A01_LTR-Gypsy_58

TGTGTTGATTGAGGGCATCAACAATATAACAGTGAAGTATCGCCACCCTATTCCTAGATTAGATGATATGCTTGATGAATTCATGGCTCTAGTATCTTTTCTAAGATTGATTTGAAGAGTGGGTATCATCAAATAAGATGAAAGAGGGAGATGATGGAAAACGCATTTAAAACTAACATGGGTGTATGAGTGGTTAGTCATGCCCTTTGGATTAACAATGCCCTAGC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

709

Start:

14038254

End:

14038962

Strand:

+

>A01_LTR-Gypsy_59

GCAGTTGGAAGAGCTATCTGATAAGGGGTTTATCAGACCGAGTACTTCACCATTGGGAGCACCAGTGTTGTTTGTGAAGAAGAAAGATGGGACTTTTAGACTTTGTATCGACTATAGAGGTCTGAACAAAGTGACAATGAAGAATAAGTACCCACTCCCGCGTATCGACGAGTTGTTGGATCAGTTACAGGGAGCTTCATGGTTCTCTAAGATTGACTTGCCATCGGGATACCACCAGATTGCGATAGCTGAGGGAGATGTGCGGAAGACGGCATTCCGTACCCGTTATGGACATTACGAGTTTGTGGTGATACCATTTGGGTTGACGAACGCACCGGCAGCATTCATGAAGCTCATGAATGATGTGTTTCGAGAGCACTTGGATAAGTGTGTGATCGTTTTCATCGACGACATCTTGGTTTATTCTCGGAGTAGAGAAGAGCATGCTGAGCATTTGCGGATTGTGTTGGGTAAGCTTCGGGAACATCAGTTGTTTGCCAAGCTGAGTAAGTGTAGCTTTTGGCAGGAAGATTGGATTTTTTGGGTCACGTGGTTTCAGAAGCAGGAGTTGCCGTAGATCAGGAGAAGATTACCGCCATTTCAGAGTGGCCGGCACCTAAGAGTGCAACGGAGATCCGCAGTTTTCTCGGTTTGGCGGGACACTATAGAAAGTATGTCAAAAGTTTTGCTAGCATTGCAAAGCCAATGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

193

Start:

14093276

End:

14093468

Strand:

+

>A01_LTR-Gypsy_60

AAGAGAGATGGTAGCTGGAGAATGTGTGTCAACTGCAAAGCCATCAATAATGTCACTGTAAAGTATCGACATCCCATTCCTAAATTAGATGATATGCTTGATGAGTTGCATGGTTCTAGCATATTTTCTAAAGTTGATTTGAAAAGTGCATATCACCAGGTTAGAATGAAAAAGGGTGATGAGTGGAAAACTG