TBGR-Browse-Bju-LTR.LTR-Gypsy

ID	Class	Order	Superfamily	Length	Start	End	Strand
A01_LTR-Gypsy_21	Retrotransposons	LTR	LTR-Gypsy	943	12175126	12176068	+
A01_LTR-Gypsy_22	Retrotransposons	LTR	LTR-Gypsy	278	12176729	12177006	+
A01_LTR-Gypsy_23	Retrotransposons	LTR	LTR-Gypsy	300	13257806	13258105	+
A01_LTR-Gypsy_24	Retrotransposons	LTR	LTR-Gypsy	283	13258342	13258624	+
A01_LTR-Gypsy_25	Retrotransposons	LTR	LTR-Gypsy	158	13476192	13476349	-
A01_LTR-Gypsy_26	Retrotransposons	LTR	LTR-Gypsy	129	13498439	13498567	+
A01_LTR-Gypsy_27	Retrotransposons	LTR	LTR-Gypsy	180	13498756	13498935	+
A01_LTR-Gypsy_28	Retrotransposons	LTR	LTR-Gypsy	846	13579863	13580708	+
A01_LTR-Gypsy_29	Retrotransposons	LTR	LTR-Gypsy	565	13597408	13597972	-
A01_LTR-Gypsy_30	Retrotransposons	LTR	LTR-Gypsy	405	13611262	13611666	+
A01_LTR-Gypsy_31	Retrotransposons	LTR	LTR-Gypsy	170	13611783	13611952	+
A01_LTR-Gypsy_32	Retrotransposons	LTR	LTR-Gypsy	88	13612059	13612146	+
A01_LTR-Gypsy_33	Retrotransposons	LTR	LTR-Gypsy	88	13624680	13624767	-
A01_LTR-Gypsy_34	Retrotransposons	LTR	LTR-Gypsy	170	13624874	13625043	-
A01_LTR-Gypsy_35	Retrotransposons	LTR	LTR-Gypsy	405	13625160	13625564	-
A01_LTR-Gypsy_36	Retrotransposons	LTR	LTR-Gypsy	152	13688422	13688573	-
A01_LTR-Gypsy_37	Retrotransposons	LTR	LTR-Gypsy	93	13688878	13688970	-
A01_LTR-Gypsy_38	Retrotransposons	LTR	LTR-Gypsy	315	13697690	13698004	-
A01_LTR-Gypsy_39	Retrotransposons	LTR	LTR-Gypsy	158	13745515	13745672	-
A01_LTR-Gypsy_40	Retrotransposons	LTR	LTR-Gypsy	162	13786088	13786249	+

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_21

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

943

Start:

12175126

End:

12176068

Strand:

+

>A01_LTR-Gypsy_21

GGGAAAGTAGCAGCCCATTCTCTAGCCCAGTGCTGCTAGTGAAGAAGAAAGACGAAAATTGGAGGTTTTGCATAGACTACCGTGCTCTGAACCGGGTGACTGTAGCTGACAAATATCCGATACCAATGATCGACCAACTTCTCGATGAGCTCCACGGTGCCGTAGTCTTCTAGAAGCTCGACCTTCGCTCTGGCTACCACCAGATCTTAGTGAAGGCTGAGGATGTTCCCAAAACGGCCTTTCGAACGCACGATGGACACTATGAGTTCCTCGTGATGCCGTTCGGACTGTCTAACGCACCTGCTACCTTCCAGTTCCTGATGAATGACGTGTTCCGACCCCACCTACGACGGTTCGTTCTCGTATTCTTTGATGACATTTTGGTATACAGCAAGACTAAAGAGGAGCATGGAAGGCATTTGGAAATAGTGCTGGGGTTGTTGGAGGAAAACCGTCTCTACGCGAACCGAAAGAAGTGCCATTTTGGCTGTGAGAAGGTGGAATACTTGGGGTACGTGATCTCAGCTCAGGGGGTAGCCGCGGACCCGGAGAAGATACGTGCAATGGTAAATTGGCCAGTACCGAGGGTAGTGAAGGAACTAAGGGGCTTTCTAGGTCTTACAGGCTATTACAGAAAGTTCGTCTTAGGTTATGGGAGTATAGCACGTCCGCTGACGTCTCTGCTGCAGAAGGATCAATTTAGCTGGAGCGTTGAAGCGGCTGATGCATTTTCAGGGCTGAAGAGAGCTATGACTACTGTACCTGTTCTAGCCATGCCTGACTTTGACGAGCTATTTGTGGTAGAATCAGACGCCTCCGGAGTTGGATTGGGCGCAGTTCTGATGCAGCAACAGCGGCCCATTGCCTACTTTAGTCAAGCTTTAACTGCGCGACAGAAGCTCAAATCAGTTTATGAACGAGAGCTTATGGCAATCGTGTTTGC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_22

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

278

Start:

12176729

End:

12177006

Strand:

+

>A01_LTR-Gypsy_22

ATCGGAAGGATACAGTGTGGTGTTGGTAGTAGTCGATCGCTTCACGAAGTACACTCACTTCTTGAAGATGAAACACCCGTTCACAGCTCCAGAAGTCGCTCAACTCTTTGTGCACGGTGTCATCAGACTCCATGGATTTCCACGAACCATAGTGTCAGATAGAGACAAGGTGTTTACGAGCCTATTCTGGAAGGAACTCTTCAAGCTGTCGGGGTCCAAACTCTGTTTCAGTACGGCTTACCACCCACAGACAGATGGGCAGACTGAAGTTACCAACC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_23

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

300

Start:

13257806

End:

13258105

Strand:

+

>A01_LTR-Gypsy_23

GTACCGGTTCTTCTAGTTCCTAAGAAAAGGTAACCAGTGGCGGATGTGTGTTGATAGTAGGCCATCAAAAGATAACCATTAAGTATCAATTCCCTATACCTCGGTTGGAAGATACGCTTGATGAGTTGTCAGGTTCTAAGGTATTTTCAAAGATAGATCTTCGTAGTGGTTATCATCAAATTCGAATCAGGCCTGGAGATGAGTGGAATACTGCTTTTAAGAGTAAAGATGGATTATACGAATGGATGGTGATGCCTTTTGGGTTTAAAAGCTCCTAGCACTTTTCAGAAGATTAATGAA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_24

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

283

Start:

13258342

End:

13258624

Strand:

+

>A01_LTR-Gypsy_24

GCCATAAGGGATTGGCGCCGCTCTTAAGTCAGTCACTGAGTACGCAGCTTTCATGGTCTAGCTACTTTCACATGATATTTGTTAGAGATTTTAGTACCATTATGCGCCATCACTAAGTGTTTGAAGAAAGGGAAGTTTCATTGGGGATCCGAACAAGAAGAGAGTTTTCTTTAATCAAAGAGAAGCTTTGTACTGCACCAGTATTAGCCTTACCTGATTTTGACAAAGTGTTTCAAGTGGAATGTGACGCTAGTGGTTTGGGAATAGGTGCCGTCTTATCACA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_25

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

158

Start:

13476192

End:

13476349

Strand:

-

>A01_LTR-Gypsy_25

TGACAAGCATGTCATCAATATAAACTTCCATCGTTTTTCCGAGTTGTTTGGAGAACATTCGGTTCACGAGTCGTTGATAAGTTGCACCAGCGTTCATGAGGCCGAAGGGCATTACCTTATAGCAATAAGTTCCGCGATCGGTAATGAATGCAGTCCTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_26

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

129

Start:

13498439

End:

13498567

Strand:

+

>A01_LTR-Gypsy_26

CTCTGGATTTTTCCAAATCCCTATTCATCCTGACGATCAAGAAATGACCACCTTTACATGCCCTTACGGAACATTCGCATACCGCAGAATGCCATTCGGTCTTTGTAATGCCCCTGCCACTTTCTAACG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_27

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

180

Start:

13498756

End:

13498935

Strand:

+

>A01_LTR-Gypsy_27

TCCTAGGACATAAAGTGTCCGCTGCTGGTATCGAAGTAGATCGAGCAAAAATTGAAGTAATGACCGGTTTGCCTGCACCCATGAACGTAAAAGACGTGAGAAGTTTTCTAGGGCATGCCGGATTCTACAGGAGGTTCATACAGGATTTTAGCAAAATTGCTAGACCTCTCACCTCCCTTA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_28

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

846

Start:

13579863

End:

13580708

Strand:

+

>A01_LTR-Gypsy_28

CCATGTGCTGTACCTGTGCTCCTTGTACCTAAAAAAGATGGGAGCTGGCGCATGTGTGTTGATTGTAGGGCAATCAACAATATAACAGTGAAGTATCGCCACCCTATTCCTAGATTAGATGATATGCTTGATGAATTACATGGCTCTAGTATCTTTTCTAAGATATATTTGAAGAGTGGGTATCATCAAATAAGAATGAAAGAGGGAGATGAGTGGAAAACAGCTTTTAAGACTAATCATGGGCTGTATGAGTGGTTAGTCATGCCCTTTGGATTAACCAATGCTCCTAGCACTTTTATGAGATTGATGAACCATGTGCTTAGATCTTTCATAGGCTTGTTTGTGGTAGTATATTTTGATGATATCCTTGTTTACAGTAAGAGCCTAGAAGAGCATATAGATCATCTTAGGTCTGTTCTTGATGTGTTAAGAAAAGAAAAATTGTTTGCTAACCTTAAGAAATGCACTTTTTGTACGGATAATTTGGTCTTCCTAGGCTTTGTTGTGAGTGCAGATGGAGTAAAGGTGGATCAGGAGAAGGTGAGAGCAATTCAATAATGGCCAATTCCTAAGACCGTAAGTGAAGTAAGGAGCTTCCATGGGCTTGCTGGTTTCTACAGGCGGTTTGTTAAAGACTTTAGCACTATAGCAGCTCCCTTGACTGAGGTGATAAAGAAAGAAGTCGGATTAAGGTGGGGAGAAGCACAAGAGACTGCCTTCCAATGCCTTAATGAGAAGCTTACTCATGCCCCTCTTCTTATACTTCCAGATTTTAATAAAACCTTTGAGATTGAATGTGATGCTTCTGGTATTGGAGTGGGTGATGTTTTGATGCAGGAAAAGAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_29

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

565

Start:

13597408

End:

13597972

Strand:

-

>A01_LTR-Gypsy_29

ATCTACAGACACGCCCTGATCAGACATGATGTGTCCAAGGAAACCAATACTTCTTTGCCAAAAACTACACTTGCTCAACTTAGCAAAGAGTTTATGTTCTCTGAGCCATTCCATCACCGCCTTGAGATGACTCTCATGGTCTTCTTTGCTTCTGGAATATACAAGTATGACATCTATGAAGATGATTACAAAATTATCCAGAAAGTCTCGGAAGATACCATTCATCATCTTCATGAACGCTGCTGGGGCATTGGGCAGACCAAACAGCATAACCACAAACTCATAGTGGTCGTCTTCCGTATATCATTGGGCTCAATTGGGATCTGATGATACCCTGAGGTCAAATAAATCTTGGAAAACCACTTGGCCCCCTTGAGCTGATCCAACATCTCATCAATCCGAGTTAATGGGTACTTGTTCTTCATAGTCACCCTATTCAACCCTCGGTCAATACACAGCCTGAAGCTACCATCCTTTTTCTTCATAAACAGGACTGGTGCTCCCCAAGGCAAGACACTCGGGCGTATAAACCCTTTGTCCAACAACTCCTCAAGTTGTTTCTTTA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_30

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

405

Start:

13611262

End:

13611666

Strand:

+

>A01_LTR-Gypsy_30

CTATGGGAGGGCTACATAAGGGAGAGCCTTAGTCCTTGTGCCGTAGCCGTCCTCCTTGTGCCCAAAAAGGATGGCTCTTGGCGCATGTGTGTGGACTGTCGTGCCATAATTAACATCACAGTAAAGTATAGGCATCCAATCCCTAGACTTGATGACATGCTAGATGAGTTGCATGGTTCCTCAGTTTTCTCAAAAATTGATTTGAAAAGTGGCTATCACCAAATTTGGATTAAAGAAGGTGATGAATGGAAAAAGGCATTTAAAACAAACTAGGATTGTATGAATGGCTTGTCTTGCCATTTGGTCTTACTAATGCACCTAGCACTTTCATGTGTTTGATGAATCATATTTTGAGATCTTTCATTGGTCATTTTCTTGTTGTCTACTTTGTTGACATTCTTATCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_31

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

170

Start:

13611783

End:

13611952

Strand:

+

>A01_LTR-Gypsy_31

TCTTAGGTTTTGTTGTAGGTGCTGATGGACTGAGTGGACAAGGAGAAGATCAAAGCCATCCAGGAATGGCCTAGTCCAACGACCGTGGGCGAGGTGAGGAGCTTTCATGGCCTTGCAGGTTTTTATAGACGATTCGTCCAAAACTTCAGTACCATCGCAGCCCCATTGAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_32

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

88

Start:

13612059

End:

13612146

Strand:

+

>A01_LTR-Gypsy_32

ATCAAGAAGAATGTCGGATTCAAATGGGAACAAGCTCAAGAAGAGGCATTCCAGATTCTTAAAGTGAAGTTGACTCAAGCCCCATTCT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_33

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

88

Start:

13624680

End:

13624767

Strand:

-

>A01_LTR-Gypsy_33

AGAATGGGGCTTGAGTCAACTTCACTTTAAGAATCTGGAATGCCTCTTCTTGAGCTTGTTCCCATTTGAATCCGACATTCTTCTTGAT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_34

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

170

Start:

13624874

End:

13625043

Strand:

-

>A01_LTR-Gypsy_34

GTCAATGGGGCTGCGATGGTACTGAAGTTTTGGACGAATCGTCTATAAAAACCTGCAAGGCCATGAAAGCTCCTCACCTCGCCCACGGTCGTTGGACTAGGCCATTCCTGGATGGCTTTGATCTTCTCCTTGTCCACTCAGTCCATCAGCACCTACAACAAAACCTAAGA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_35

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

405

Start:

13625160

End:

13625564

Strand:

-

>A01_LTR-Gypsy_35

AGATAAGAATGTCAACAAAGTAGACAACAAGAAAATGACCAATGAAAGATCTCAAAATATGATTCATCAAACACATGAAAGTGCTAGGTGCATTAGTAAGACCAAATGGCAAGACAAGCCATTCATACAATCCTAGTTTGTTTTAAATGCCTTTTTCCATTCATCACCTTCTTTAATCCAAATTTGGTGATAGCCACTTTTCAAATCAATTTTTGAGAAAACTGAGGAACCATGCAACTCATCTAGCATGTCATCAAGTCTAGGGATTGGATGCCTATACTTTACTGTGATGTTAATTATGGCACGACAGTCCACACACATGCGCCAAGAGCCATCCTTTTTGGGCACAAGGAGGACGGCTACGGCACAAGGACTAAGGCTCTCCCTTATGTAGCCCTCCCATAG

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_36

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

152

Start:

13688422

End:

13688573

Strand:

-

>A01_LTR-Gypsy_36

TCAGTGACTCCATTATCTACTCCTCGTTTATCTTTAATTTCAATATCAAATTCTTGGAGTAGTAAAATCCAGCGTATGAGTTGGGGTTTTGCATATTTATTTTGCATTAAATATTTAATGGCAGCGTGGTCAGTGTGAACTATCACATGTGT

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_37

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

93

Start:

13688878

End:

13688970

Strand:

-

>A01_LTR-Gypsy_37

GAGGTTATTCAAAGGTCTAGCAATCTTGCTGAAGTATTGTATAAACCTCCTGTAAAAGCCGGCGTGTCCGAGAAAACTTCGCACGTCTTTTAC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_38

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

315

Start:

13697690

End:

13698004

Strand:

-

>A01_LTR-Gypsy_38

GAAAGTCATCCATAAAGACTTCCATAAAGTCTTCGATCATGTCTGTAAAGATTGACATCATGCAACGTTGGAAAGTGACGGGAGCATTACAAAGTCCAAATGGCATTCTGCGATACGCAAATTTTCCATAGGGGCATGTAAAGGTCGTCTTTTCTTGATCATCTAGATGTATGGGAATTTGGAAGAATCAGGAATATCCATCAAGGAAACAATAATACTGGTGATTAGCTAAACGCTCCAGCATTTGACCAATAAAGGGTAGGGGAAAGTGATCTTTCCTAGTAGCGGCATTTAATTTCCTATAGTCGATACACA

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_39

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

158

Start:

13745515

End:

13745672

Strand:

-

>A01_LTR-Gypsy_39

TGACAAGCATGTCATCAATATAAACTTCCATCGTTTTTCCGAGTTGTTTGGAGAACATTCGGTTCACGAGTCGTTGATAAGTTGCACCAGCGTTCATGAGGCCGAAGGGCATTACCTTATAGCAATAAGTTCCGCGATCGGTAATGAATGCAGTCCTC

Brassica juncea (Tumida_V1.5)

ID:

A01_LTR-Gypsy_40

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

162

Start:

13786088

End:

13786249

Strand:

+

>A01_LTR-Gypsy_40

CTCCGGATTTTTCCAAATCCCCATACATCCTGACGATCAAGAAAATACCACTTTTACATGCCCTTACGGAACATTCCTATACCGCAGAATGCCTTTCGGTCTTTGTAATGCTCCCGCCACTTTCCAATGTTGCATGATGTCAATCTTCACAGATATGATAGA