TBGR-Browse-Rsa-LINE.LINE-L1-Tx1

ID	Class	Order	Superfamily	Length	Start	End	Strand
R6_LINE-L1-Tx1_21	Retrotransposons	LINE	LINE-L1-Tx1	82	2256849	2256930	+
R6_LINE-L1-Tx1_22	Retrotransposons	LINE	LINE-L1-Tx1	84	8272449	8272532	-
R6_LINE-L1-Tx1_23	Retrotransposons	LINE	LINE-L1-Tx1	96	9987879	9987974	+
R6_LINE-L1-Tx1_24	Retrotransposons	LINE	LINE-L1-Tx1	108	11007836	11007943	+
R6_LINE-L1-Tx1_25	Retrotransposons	LINE	LINE-L1-Tx1	249	16167035	16167283	+
R6_LINE-L1-Tx1_26	Retrotransposons	LINE	LINE-L1-Tx1	256	49547787	49548042	+
R7_LINE-L1-Tx1_27	Retrotransposons	LINE	LINE-L1-Tx1	95	9980650	9980744	-
R7_LINE-L1-Tx1_28	Retrotransposons	LINE	LINE-L1-Tx1	95	9992121	9992215	-
R7_LINE-L1-Tx1_29	Retrotransposons	LINE	LINE-L1-Tx1	105	10157015	10157119	+
R7_LINE-L1-Tx1_30	Retrotransposons	LINE	LINE-L1-Tx1	127	10636183	10636309	+
R7_LINE-L1-Tx1_31	Retrotransposons	LINE	LINE-L1-Tx1	82	14162279	14162360	+
R7_LINE-L1-Tx1_32	Retrotransposons	LINE	LINE-L1-Tx1	85	17737019	17737103	+
R7_LINE-L1-Tx1_33	Retrotransposons	LINE	LINE-L1-Tx1	146	21444706	21444851	-
R7_LINE-L1-Tx1_34	Retrotransposons	LINE	LINE-L1-Tx1	146	22067407	22067552	-
R7_LINE-L1-Tx1_35	Retrotransposons	LINE	LINE-L1-Tx1	111	26288791	26288901	+
R7_LINE-L1-Tx1_36	Retrotransposons	LINE	LINE-L1-Tx1	111	26302556	26302666	+
R8_LINE-L1-Tx1_37	Retrotransposons	LINE	LINE-L1-Tx1	109	15326106	15326214	-
R8_LINE-L1-Tx1_38	Retrotransposons	LINE	LINE-L1-Tx1	109	15345009	15345117	-
R8_LINE-L1-Tx1_39	Retrotransposons	LINE	LINE-L1-Tx1	82	16499416	16499497	+
R8_LINE-L1-Tx1_40	Retrotransposons	LINE	LINE-L1-Tx1	116	28385929	28386044	+

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_21

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

2256849

End:

2256930

Strand:

+

>R6_LINE-L1-Tx1_21

TGCCAAGGGATAAGTCACCAGGTCCGGATGGGTTCACAACAGAATTTTTCAAAGCAACCTGGAGTATAATAGGAAAGGATTT

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_22

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

84

Start:

8272449

End:

8272532

Strand:

-

>R6_LINE-L1-Tx1_22

AAAACTCCATCGTGTACCCATCAGGACCAGGTGATTTATCCCCTGCCATAGAGAACAGAACCTTCTTCACTTCTTCTATAGTTA

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_23

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

96

Start:

9987879

End:

9987974

Strand:

+

>R6_LINE-L1-Tx1_23

TTAACTTTTCTTGATATGAATACCATTGAAACTGCCACAAATAATTTCAGTCTGTCAAATAAACTCGGACAAGGTGGATTTGGTTCAGTTTACAAG

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_24

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

108

Start:

11007836

End:

11007943

Strand:

+

>R6_LINE-L1-Tx1_24

CTACAAAATAATATCTAAGGTCTTATGCCAAAGATTAAAAAAGTTCCTTCCACATTTGATATCTGAGACTCAGCCGGCTTTTGTGGCAGGGAGACAAATATCAGATAA

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_25

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

249

Start:

16167035

End:

16167283

Strand:

+

>R6_LINE-L1-Tx1_25

AAGTCTCCTGGACCAGATGGGTTCAATGCAGAATTTTATAAGGCTACATGGGAAATCATTGGTTCAGAATTTGTGATAGCAGTTCAAGCTTTCTTTGATAAAGGCTTCCTTCCTAAGGGTATTAATTCTACAATCTTGGCTTTGATACCGAAAAAAACGAATGCGATGGAGATGAAGGACTACAGACCTATATCATGTTGCAACGTCATTTATAAGGTGATCTCTAAACTATTAGCCAATAGACTCAAG

Raphanus sativus (v1.0)

ID:

R6_LINE-L1-Tx1_26

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

256

Start:

49547787

End:

49548042

Strand:

+

>R6_LINE-L1-Tx1_26

AACAAATAAGTCTCCTGGACCAGATGGGTTCAATGCAGAATTTTATAAGGCTACATGGGAAATCATTGGTTCAGAATTTGTGATAGCAGTTCAAGCTTTCTTTGATAAAGGCTTCCTTCCTAAGGGTATTAATTCTACAATCTTGGCTTTGATACCGAAAAAAACGAATGCGATGGAGATGAAGGACTACAGACCTATATCATGTTGCAACGTCATTTATAAGGTGATCTCTAAACTATTAGCCAATAGACTCAAG

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_27

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

95

Start:

9980650

End:

9980744

Strand:

-

>R7_LINE-L1-Tx1_27

ATACACTGCATTATCAAATTAATCCATTTCTCGTCAAACCCAAGTCTTATCATTACTTGTTCCACGAAGGTCCATTCGACGCGATCATAAGCTTT

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_28

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

95

Start:

9992121

End:

9992215

Strand:

-

>R7_LINE-L1-Tx1_28

ATACACTGCATTATCAAATTAATCCATTTCTCGTCAAACCCAAGTCTTATCATTACTTGTTCCACGAAGGTCCATTCGACGCGATCATAAGCTTT

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_29

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

105

Start:

10157015

End:

10157119

Strand:

+

>R7_LINE-L1-Tx1_29

TTTTCATTGTTTCGCGATATTAATAAAATCTGTATAAGGGTATAGTTTTAAATACAGTGACAAAAAAAAAAAAAAAGGGTATAATTTTAAATTTCGATTAGGACA

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_30

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

127

Start:

10636183

End:

10636309

Strand:

+

>R7_LINE-L1-Tx1_30

TTGGTGTTCCTAGGAAATTCATTCATTGGGTTAAGCTTTGTATAACTACTCCGTCGTTTTCAGTTCAGGTTAATGGTGAGCTTGGGGGCTATTTTCAAAGTTCAAGAGGGCTGAGACAAGGGTGTTC

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_31

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

14162279

End:

14162360

Strand:

+

>R7_LINE-L1-Tx1_31

TAGTTGCATTTGCATCTTTAAGATCGAGTCTAGAGCATTCATCTGCTTGACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_32

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

85

Start:

17737019

End:

17737103

Strand:

+

>R7_LINE-L1-Tx1_32

GAGGTTTACGGCAAAGGAACCCGTTATCTCCGTATCTTTTTATTATGTGTACAGAAGTTCTGATAGCTAATATTAAAAAAGCGGA

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_33

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

146

Start:

21444706

End:

21444851

Strand:

-

>R7_LINE-L1-Tx1_33

TGGCTCTATCAGCTCTGGCAGAAGCACTTTTAATCTGTTTGCAAGGACCTTTGAAATCACCTTGTATAAGATATTACAGCAACTGATGGGCCGATAATCCTTCATCTCCTTAGCATCATCATGTTTCGGTATCAGTGTGAGAATTG

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_34

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

146

Start:

22067407

End:

22067552

Strand:

-

>R7_LINE-L1-Tx1_34

TGGCTCTATCAGCTCTGGCAAAAGCACTTTTAATCTGTTTGCAAGGACCTTTGAAATCACCTTGTATAAGATATTGCAGCAACTGATGGGCCGATAATCCTTCATCTCCTTAGCATCATCATGTTTCGGTATCAGTGTGAGAATTG

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_35

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

111

Start:

26288791

End:

26288901

Strand:

+

>R7_LINE-L1-Tx1_35

TACAAGATCATTTCGAAGTTATTATGTCAGAGGTTAAAGGCGTGTCTTCCATTGCTCATATCAGAAACTCAGTCAGCTTTCGTGCCTAGCAGACTGATTTCTGATAATATA

Raphanus sativus (v1.0)

ID:

R7_LINE-L1-Tx1_36

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

111

Start:

26302556

End:

26302666

Strand:

+

>R7_LINE-L1-Tx1_36

TACAAGATCATTTCGAAGTTATTATGTCAGAGGTTAAAGGCGTGTCTTCCATTGCTCATATCAGAAACTCAGTCAGCTTTCGTGCCTAGCAGACTGATTTCTGATAATATA

Raphanus sativus (v1.0)

ID:

R8_LINE-L1-Tx1_37

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

109

Start:

15326106

End:

15326214

Strand:

-

>R8_LINE-L1-Tx1_37

ATTGAGGTATATTGCTCGTGAATGTGTTACCAGACAAGTTGAGAAGACGCAATTCTTGCAATACTCCAACAGAATTGGGGATCTTTCCACAAAACTTGTTTTCTGAAAA

Raphanus sativus (v1.0)

ID:

R8_LINE-L1-Tx1_38

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

109

Start:

15345009

End:

15345117

Strand:

-

>R8_LINE-L1-Tx1_38

ATTGAGGTATATTGCTCGTGAATGTGTTACCAGACAAGTTGAGAAGACGCAATTCTTGCAATACTCCAACAGAATTGGGGATCTTTCCACAAAACTTGTTTTCTGAAAA

Raphanus sativus (v1.0)

ID:

R8_LINE-L1-Tx1_39

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

16499416

End:

16499497

Strand:

+

>R8_LINE-L1-Tx1_39

AATAACAAAGATTTTGGCTAAGAGACTCAAAAAGATCCTCCCGTCGATTATATCTGAAACTCAGGCTGATTTTATTGAAGGC

Raphanus sativus (v1.0)

ID:

R8_LINE-L1-Tx1_40

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

116

Start:

28385929

End:

28386044

Strand:

+

>R8_LINE-L1-Tx1_40

TCCTTGCATTGGTACCAAAGAAGCTGGAGTCCTATGAGATGAGAGACTACAGACCAATAGCTTGCTGCAACGTTCTTTATAAGGTTGTTTCGAAGATTGTGGCAAACAGATTAAAG