ID Class Order Superfamily Length Start End Strand View
scaffold_1_LTR-Gypsy_81 RetrotransposonsLTRLTR-Gypsy1231284359612843718-
scaffold_1_LTR-Gypsy_82 RetrotransposonsLTRLTR-Gypsy1641288445712884620-
scaffold_1_LTR-Gypsy_83 RetrotransposonsLTRLTR-Gypsy1231301017913010301+
scaffold_1_LTR-Gypsy_84 RetrotransposonsLTRLTR-Gypsy871302657113026657-
scaffold_1_LTR-Gypsy_85 RetrotransposonsLTRLTR-Gypsy1201303796513038084-
scaffold_1_LTR-Gypsy_86 RetrotransposonsLTRLTR-Gypsy901303887013038959+
scaffold_1_LTR-Gypsy_87 RetrotransposonsLTRLTR-Gypsy871303929513039381-
scaffold_1_LTR-Gypsy_88 RetrotransposonsLTRLTR-Gypsy871304601913046105-
scaffold_1_LTR-Gypsy_89 RetrotransposonsLTRLTR-Gypsy911304634513046435+
scaffold_1_LTR-Gypsy_90 RetrotransposonsLTRLTR-Gypsy901305175713051846+
scaffold_1_LTR-Gypsy_91 RetrotransposonsLTRLTR-Gypsy871305214013052226-
scaffold_1_LTR-Gypsy_92 RetrotransposonsLTRLTR-Gypsy1131305241213052524+
scaffold_1_LTR-Gypsy_93 RetrotransposonsLTRLTR-Gypsy2611305326513053525-
scaffold_1_LTR-Gypsy_94 RetrotransposonsLTRLTR-Gypsy12601305408613055345-
scaffold_1_LTR-Gypsy_95 RetrotransposonsLTRLTR-Gypsy11861305534313056528-
scaffold_1_LTR-Gypsy_96 RetrotransposonsLTRLTR-Gypsy2881305660613056893-
scaffold_1_LTR-Gypsy_97 RetrotransposonsLTRLTR-Gypsy11621305766513058826-
scaffold_1_LTR-Gypsy_98 RetrotransposonsLTRLTR-Gypsy2021305957013059771-
scaffold_1_LTR-Gypsy_99 RetrotransposonsLTRLTR-Gypsy1271306464013064766-
scaffold_1_LTR-Gypsy_100 RetrotransposonsLTRLTR-Gypsy871306590813065994-

< 5 6 7 8 9 > Total 342


Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

123

Start:

12843596  

End:

12843718

Strand:

-

>scaffold_1_LTR-Gypsy_81

CCTGCAAAATAAAATGAGCTTTGAGTAATCTAGTATTACTCAGTGAGTCGGGTACCCTTCTGTCATGCATTTCGATCCCACCCAAATCAAACATGCAACAAAATCAGAGAGCGTTAGCGGAAG

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

164

Start:

12884457  

End:

12884620

Strand:

-

>scaffold_1_LTR-Gypsy_82

CAATAATCTAAAACACCAATGAACGCCTAGATCATCCTCCTCTCCACGCCATGATTCCACGGATCACACCTTGCTTTTACCTGCATCAAAGAAAGAGATGCATAAGTATTTTATAAATACTTAGTGAGGCAATCATCCCACCACTGGCTATACACACAAGCAGA

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

123

Start:

13010179  

End:

13010301

Strand:

+

>scaffold_1_LTR-Gypsy_83

TTGTTTGGCTATTGTATTTGGGTGTTAATGTTTTAACTTACTTCTATGTATAGCCCGTAGATAGGACATACGTCTCATTAAACTATTGGTAATAATAGTTACACATCTCATTTCTTAATGTAG

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

13026571  

End:

13026657

Strand:

-

>scaffold_1_LTR-Gypsy_84

TACACTCTCTCTTTACCTAATTCACAAGTGATAATACAACTTGATATCTTAGTACATCTTAGTCGCTTTCGGAAAAATAGAAAACAT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

120

Start:

13037965  

End:

13038084

Strand:

-

>scaffold_1_LTR-Gypsy_85

TTAACTACATTAAGAAATGAGATGTGTAAATATTATTATCAATACTTTAATGAGACGTATCTACGGGCTATACATAGAAGTAAGTTAAAATATTAACACCCAAAGACGATAGCCAAACAA

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

90

Start:

13038870  

End:

13038959

Strand:

+

>scaffold_1_LTR-Gypsy_86

TGTTTTGCTTGTGTATCATTATGTTCTTGATTTCCTTGTGTGTATACCCCATATACGAGAAGATCACATCACTAAATAGTTGTTATAATA

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

13039295  

End:

13039381

Strand:

-

>scaffold_1_LTR-Gypsy_87

TACACTCTCTCTTAACTTAATTCACAAGTGATAATACAACTTGAGATCTTTGTACATCTTAGTCGCTTTCGGAAAAATAGAAAACAT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

13046019  

End:

13046105

Strand:

-

>scaffold_1_LTR-Gypsy_88

TACACTCTCTCTTTACCTAATTCACAAGTGATAATACAACTTGAGATCTTTGTACATCTTAGTCGCTTTCGGAAAAATAGAAAACAT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

91

Start:

13046345  

End:

13046435

Strand:

+

>scaffold_1_LTR-Gypsy_89

CGACACAAAATGTTAGTGTCGATTGACACCCACCTTTGGTGTCGAGCGACATTGAAACTCTAACATCACTCCAGTCGCTTCTCATCGACGT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

90

Start:

13051757  

End:

13051846

Strand:

+

>scaffold_1_LTR-Gypsy_90

TGTTTTGCTTGTGTATCATTATGTTCTTGATTTCCTTGTGTGTATACCGCATATACGAGAAGATCACATCACTAAATAGTTGTTATAATA

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

13052140  

End:

13052226

Strand:

-

>scaffold_1_LTR-Gypsy_91

TACACTCTCTCTTTACCTAATTCACAAGTGATAATACAACTTGAGATCTTTGTACATCTTAGTCGCTTTCGGAAAAATAGAAAACAT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

113

Start:

13052412  

End:

13052524

Strand:

+

>scaffold_1_LTR-Gypsy_92

ACACCATTGGTGACCATCCTCACGACACAGAATGTTGGTGTCGATCGACACCCACCTTTGGTGTCGAGCGATACTGAAATTCTAACATCACTCCAGTCGCTTCTCATCGATGT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

261

Start:

13053265  

End:

13053525

Strand:

-

>scaffold_1_LTR-Gypsy_93

TGGTTGTAAAACTCTCCTTGACAAAACAAGTGGATGGATGGACGAATAAGTAACCAGATGGATCGATGGACGCCACAAAGCTTATGAAAGAGCTTTGATAAGTCAAGAACTCAAGCTTCAACGGATTCGCACACAGAGAAGACAAGAGCGGCTAGGTTTTCTTCGCTAAGAAAATTCGGTCTTTATTTCATAAAACGTGAAGTGTTTACAAGCTGAGAAAGAGCTTTATTAATAGCTCTGCAGCCTAGGGCTTCTATGGCC

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1260

Start:

13054086  

End:

13055345

Strand:

-

>scaffold_1_LTR-Gypsy_94

TCATTCCCTCCCTCTTGAAAAGGTTCTGACCTCAGAACTGGTTCTTCTGCATCAAAAGGTGCTTAGTCAGTAACATTGAATGTAGCAGAAATGTTTAACTCACCTGGCAGCTCAAGCTTGTAAGCATTATCGTTGATCTTCTCTAAAACTCGGAAAGGACCGTCGCCTCTTGATGAAAGCTTGGACTTCCGTTGGTTAGGGAAACGTTCATGGCACATGTGTAGCCAAACCCAATCTCCCGGTTCAAAGGTGACTTCTTTACGGCTTTTGTTGGCTTGTTCCTGGTACTTTTCTGTCTTCTTGTCTATGTTCTCCTTAACTTGTTGGTGTAGTTTCTTCACAAACTCAGCCCGTGTCTCTCCATCTGCGCTAAAAACAGCTTGTGGCAATGGTGAAAGATCAAGTGGGGTGAGAAATTTAAAACCATAAACAATTTCAAAAGGGGAGAATTTAGTAGCAGAGTGCTTAGCATGATTGTAAGCAAACTCGATGTAAGGTAGGCATGTAAGCCAGTTCCTTAAGTTCTTACCGACCGTGGCCCTTAGTAAGGTAGAGAATGTTCGATTTACCACCTCGGTTTGGCCGTCAGTTTGAGGATGACACGTCATGGAGAAAATGAGCTTTGTTCCTAGCTTCTTCCATAAGGTCCTCCAAAAGTGGCTTAGAGATTTCGTGTCACGGTCCGACACTATGGTCCTTGGTATTCCATGAAGACGAACAACCTCTTTAAAGAATAGATCCGCCGTTTGGGTTGCATCATTAGTCTTGTTGCATGGAATGAAATGGGCCATCTTTGAAAACCTGTCAACAACTACAAAGATCGAGTCCTTGTGGTTTATCTTCGGGAGTCCTAAAACAAAATCTTTAGATATGTCCACCCAAGGCATGTTAGGGATAGGTAAAGGCAATCATAAACCGTGTGGATGTAACATGTATTTAGCCTTTAAGCAAGTGATGCATTTAGAACAGAAACGTTCTACGTCCTTCTTTAAGTGTGGCCAAAAGAAGTGCTCGGTTAGTACACTTATAGTCTTATCTCGCCCAAAATGTCCCATGAGGCCTCCTCCATGAGCTTCTCGGACTAGTAACTCTCTCATGGACCCTTGTGGAATACAAAGCCGCTTCTCCTTGAATAGTAAACCGTCTTGTTGATAGTATGCTCCAAATGCTGCCCTTGTAGTCTCCTTGTAGATATCTTGAAAGTCGGGGTCTTCTTCATAGATTCTCTTAATGTGTTCAAACCCCATGATCTTAGCCTCC

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1186

Start:

13055343  

End:

13056528

Strand:

-

>scaffold_1_LTR-Gypsy_95

TCCTTGACAAACCGTCGATAGAAGCTTGCTAAACCATGGAAGCTCCGAACGTTGTTGATGGTTGTAGGAGTCGGCCATTCTTGTATTGCCTTGATCTTCTCGTTGTCTACTTTTAGTCCCTGCGAACTAACAACAAAGCCTAGGAAAACCAATTGATCAGTGCAAAAAGTACATTTCTTAAGGTTTGCATATAAACCTTCCTCCCGGAGCGTCTCTAGAACCTGTTCTAGATGGCCTAAGTGATCTGCAAAACATGTAGTATAGATGAGTATATCATCAAAGTAAACTACTACAAACTTACAGATGTAGGCTCTTAGGACGTGATTCATGAGCCTCATGAAGGTGCTAAATGCATTTGTAAGTCCAAACGGCATTACTAGCCACTCATACAAGCCTCGCTTAGTTTTGAATGCGGTTTTCCATTCGTCGCCTTCCTTCATTCTAACTTGATGGTATCCGCTCTTCAAGTCTATCTTAGAAAAGATGGTTGCTCCGTGTAGTTCATCTAGCATATCGTTTAGCCTCGGAATGGGGTGTCTATACTTGATGGTAATGTTGTTTATAGCACGGCAATCCACACACATCCTCCATGTCCCATCCTTCTTGGGTACTAGTAGAACAGGAACAGCACATGGACTTAGACTCTCTCGAATGTAGCCCTTTGACATAAGGTCTTGAACTTGTAGCTCCAATTCCTTAGCTTCCTCGGGGTTGACTCGGTACGCCGGTCGGTTTGGTAGAGGAGCACCGGGCACTAGATTGATTTGATGCTCGATTCCTCTAAGTGGTGGTAGTGCAGCGGGTATCTCTTCGGGAAAGACGTCCGTGAACTTCTCTAAAAGTTTTAGTATCTCCTCGGGTACTTCTTTCTCTTCGGTTCCTGAAAATAACCCTTCTCAAAAGATCATAAGTAGCACTGTGTTCTTGGAATTAAGTGAGTTTAAAACAGTATTAGGTGATACATATAAGTTAGTCTTACTCATCTTAGCTCCCTTTTCCATTGTTTTTTTTTGTATTTCATGGACTTCTTGTGGGGTTAGTGGTGCGAGATTATGCTTGCGGTTGTTGTGGGTGAAACTATAGTAGTTGCTTCGCCCACTGTGAAGTGTATCTTTGTCGAATTGTCATGGCCTTCCTAGAAGTAAGTGGCCGGCTTGCATTGGCACCACATGATACAAGACTCGGT

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

288

Start:

13056606  

End:

13056893

Strand:

-

>scaffold_1_LTR-Gypsy_96

TTGATGTAGATCTGACACGATGGCGGTCACTTCTCTCGTGTGGGATCGAATAAAGGGGAAGTGCTGGCGGATTGAAGTACACCACAGAGATGTGATTGGTCTCTGATACAGTACACGATCTTAGCCTTGTGGAATCACACACCCAAGACAAAGAACAAGCTTATTCTCTTAAGAACACTTAAAGAGAAGAAGTGAAGAAAGTTCGGTTCTTTATTGATAATCAAGGGTGAAAAATCGTACAACTGCTGCAGGGGGACTTTATAAGAGTCCATCAGCTAGCCCTAGGGC

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1162

Start:

13057665  

End:

13058826

Strand:

-

>scaffold_1_LTR-Gypsy_97

CACCACATCACATAGAACTTGGTCGGCATACTTTCCCACACTAAAAGGTACGGTGAATTGCTCGGATATCTTGAGCTCGGTCTCGTCATTAAGCCATTTGAGACGGTAAGGCCCGGGTGTCTTGTTTTCTTAAAACCTAGCTTATCCACAAGATATTTGCTGGCCACGTTAGTGAAAGAACCTCCATCAATGATAAGACTACATACCTTAGACAAAATGGTGCATCGAGAGTGAAAGATGTTCTCTCGTTGGATCGTCTCGGGGTCAAAGAAAGAGCTTAGGGCTCTTCTAGTCACTAGGAGCTCTCCAACATCAGGATAGTCAATAACATCTTCTTCTGAACCGGCTAGTTCTCCTTCAGCTTCATCTTGAGATTCATACTCTCCATTATCTTTGAGGATCATGAGTCGCTGGTTTGGGCATTTTTGAGCATAATGGCCTTTTCCCTGACATTTAAAACATGTAATGTCACGAGATCGTTGGTTTTGGGGCTTACCTTGGTCGGGTTTCGTTGGCATGGTTGATCCCGGGATAGGTTTCTTAAACTTGGGATCAATTTCTATAGACTTTCCCTTGTCTATATTCCGTTGGGGATGTGGCGTCCAATTGGTTATACTCCGGCTAGTTGAAGCAGCCTTCTTCTTGATATGTTGCTCCGCTTGTATAGCCAAGTGCAGCAAGTCTTCTAAGTCACGATATACTTGCATCTCAACCTTCCTCTGAATTCTGTCATTTAAACCATCAAGAAACTGAGCCATAACAGTTTCCTCGGACCCATCAATTTCCAATCTGTTTTTAAGGAGTTCAAACTCCTCAAAATACTCTTCTACGGTTTTGGTGCCTTGAGTTAGTTTCCGAAATCTTTTATGCAAATCTCGGTGATAGTATGATGGCACATATCTCTTCCGTAGGCAGTACTTTAAGTCTTCCCAAACAAGAATCTGGCGGTGTCCAAGTCTCCTTCTCTCCAAAACTTCTCTATCCCACCAGACTAGTGCATTCTCCGTGAATTGTGCAGCAGCAAGAGACACCTTCTTTGCATCTGAGTAGTTGTAGTACTCGAATATGGACTTTATTCTTCTCTCCCATTCAAGGTAAGCTTCTGGATTTATTCTCCCAGCAAATGTTTGAGCCGTGATCTTCAAGTCATTATTGCCTTGTC

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

202

Start:

13059570  

End:

13059771

Strand:

-

>scaffold_1_LTR-Gypsy_98

GGATCGATGGACGCCACAAAGCTTATGAAAGAGCTTTGATAAGTCAAGAACTCAAGCTTCAACAAATTCGCACATAGAGAAGACAAGAGCGGCTAGGTTTTCTTTGCTAAGAAAATTCGGTCTTTATTTCATAAAACGTGAAGTGTTTACAAGCTGAGAAGGAGCTTTATTAATAGCTCTGCAGCCTAGGGCTTCTATGGCC

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

127

Start:

13064640  

End:

13064766

Strand:

-

>scaffold_1_LTR-Gypsy_99

TTAACTACATTAAGAAATGAGATGTATAAATATTATTACCAGTACTTTAATGAGACGTATCTCATATCTGTAGGCTATACATAGAAGTAAGTTAAAATATTAACACCCAATGACGATAGCCAAACAA

Capsella rubella (v1.1)

ID:

scaffold_1_LTR-Gypsy_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

87

Start:

13065908  

End:

13065994

Strand:

-

>scaffold_1_LTR-Gypsy_100

TACACTCTCTCTTTACCTAATTCACAAGTGATAATATTACTTGAGATCTTTGTACATCTTAGTCGCTTTCGGAAAAATAGAAAACAT