ID Class Order Superfamily Length Start End Strand View
Scaffold10040_LTR-Gypsy_61 RetrotransposonsLTRLTR-Gypsy158596772596929+
Scaffold10040_LTR-Gypsy_62 RetrotransposonsLTRLTR-Gypsy929597971598899+
Scaffold10040_LTR-Gypsy_63 RetrotransposonsLTRLTR-Gypsy3438599016602453+
Scaffold10040_LTR-Gypsy_64 RetrotransposonsLTRLTR-Gypsy174604347604520+
Scaffold10040_LTR-Gypsy_65 RetrotransposonsLTRLTR-Gypsy271606038606308+
Scaffold10040_LTR-Gypsy_66 RetrotransposonsLTRLTR-Gypsy194610472610665+
Scaffold10040_LTR-Gypsy_67 RetrotransposonsLTRLTR-Gypsy150612829612978+
Scaffold10040_LTR-Gypsy_68 RetrotransposonsLTRLTR-Gypsy886613003613888+
Scaffold10040_LTR-Gypsy_69 RetrotransposonsLTRLTR-Gypsy108625485625592-
Scaffold10040_LTR-Gypsy_70 RetrotransposonsLTRLTR-Gypsy353626822627174-
Scaffold10040_LTR-Gypsy_71 RetrotransposonsLTRLTR-Gypsy973628451629423-
Scaffold10040_LTR-Gypsy_72 RetrotransposonsLTRLTR-Gypsy153633374633526+
Scaffold10040_LTR-Gypsy_73 RetrotransposonsLTRLTR-Gypsy1005633994634998+
Scaffold10040_LTR-Gypsy_74 RetrotransposonsLTRLTR-Gypsy1655635254636908+
Scaffold10040_LTR-Gypsy_75 RetrotransposonsLTRLTR-Gypsy720651789652508+
Scaffold10040_LTR-Gypsy_76 RetrotransposonsLTRLTR-Gypsy2503656878659380+
Scaffold10040_LTR-Gypsy_77 RetrotransposonsLTRLTR-Gypsy1736660128661863+
Scaffold10040_LTR-Gypsy_78 RetrotransposonsLTRLTR-Gypsy173661864662036+
Scaffold10040_LTR-Gypsy_79 RetrotransposonsLTRLTR-Gypsy1002662380663381+
Scaffold10040_LTR-Gypsy_80 RetrotransposonsLTRLTR-Gypsy122671603671724+

< 4 5 6 7 8 > Total 675


Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_61

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

158

Start:

596772  

End:

596929

Strand:

+

>Scaffold10040_LTR-Gypsy_61

agacgggaggaccgtctcactaagcattatcaatgcttacgcgcctcttttggtgcaggtaaagagaagtcttaagtcttggagcgcgtggaaccaaggccgaagggagggaaaaggatgatctagacgggctctcgtatcttgtgtttgggttgttt

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_62

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

929

Start:

597971  

End:

598899

Strand:

+

>Scaffold10040_LTR-Gypsy_62

tgatgggtatgttggctcagattttggagaggttaccaggaccggtaccagctccagcccctgagatgccaccaagaggtgaagagccaccaagagttatggctcatgaggcagttgcagggcaaatgatcccatcttacctttccgtgatggatcatatgcagaggcttggcaCAAAGTTCTTTCTTGGGGGTGCCAAACCTGTTGAAGCTGATGAGTGGAGGACAAGACTGGAGAGAAACTTCCACTCTATAAGGTGCCCTGAGGAGTATAAGGTAGATattgcggtgcattacctggagggagatgcgcatatgtggtggagaaacgTGTTGGCTAGAAGAGCCAATGGTGTGAATACTTGGGAGGAATTCTGTGAGAAGTTCAACCTCAAATACTTCCCGCAAGAAGCTATGGATCGTTTGGAGAAGTAGTTTTTAGAATTGTCTGAAGGAACGAGGTCGGTTCGAGAgtatgaagtgGAGTTTAACCGACTTTGAAGGTATGCGGGGAGGGGTCTTGAGGATGAATAGGCCCAAGTAAGAAGGTTTCTAAGGGGGATGCGTTTGGAGTTGAGGAATAGATGCAttgtgagatcaTATGCATCGGTGGCCGAGTTAGTGGAGAAGGCGGCCATGATTGAAGAAGGTTTAATAGAGGAGAATAAAGCAGCTAAGTCTCCGACTCAAGGGAAGAAGTCCTTTACTTCCGATTCTGGGAGAGGTGGCAAGTTCATGGGAGGCCAGAAGAGGAAGTGGgagggctcttcTCAGAGTGCTTCTAGCACTCAATCGGGATGCTTCAAGTGTGGAGACAAGAGTCATAAGGCTGTTAACTGTCCTAATAAGGATAGCAGGATTTGCTTCCATTGCAAGGAAGTGGGACATATCAAGACTTCCTGTCCCAAACTTCAACAAGGTAGCGGAAGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_63

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

3438

Start:

599016  

End:

602453

Strand:

+

>Scaffold10040_LTR-Gypsy_63

TAAATTATTTCGATATGGTTATGTATGTTGTCATTTGTGTGTGGGTATTGGGGTTGTTATTGGTGTGTGGCCTCAATGCATAGACTATGTGTAGGGaccctgaacgTGGGAGGGGTTATATCTCACGTGTTGTTTGATTATGGAGCATCTCATTGCTTTGTCACTCCGGAATTAGTGAAAGAAGGAAGGCTCCGAGAAGAGCCTAGTGATTGTTTGAGAAGAGTGAAAGTGGATGGGGGCCAGACTTTTGAGACACATAGTCTAGTAAAAGATGTCGAGGTCCATATTGCGGAGAAGTGAAGCCAGCCAATCTAATCGTGTGGCCGGTGGAATTATATGATGTGATATTGGGAatggattggctTGGGAAGTATAAGGCTCACCTAGATTGTCATCGGGGTCGAGTTATATTCGGAAATGACCATGGGCGAGTGGTGTATCAAGGCGTGAGACCTACGCAGGGAAGCTTGGTGATTTCGGTTATTCAAGCCGAGAAGATGATAAACAACGGATGTGAAGCATATCTCGCGACTATCtcgatacccgaGGAGGTTGGAGATTCAATGCTTCAAAACATTCCTGTGGTGAGAGAATTTGAAGACGTGTTTCAACCGTTGGAAGGATTACCGCCACTGAGATCGGATCTTTTCACGATTGATTtggaaccggggACGGCTCCTATTTCTAAAGCTCCATACCGTGTGGCCCGGCGGAGATGGCAGAGCTTAAGAAGCAATTGGAGGagctattggaTAAGGGTTTCATAAGACCGAGCTGCTCACCATGGGGAGCGCCGGTTATGCATTGATTATCAGGGTTTGAATCGGGTGACGATAAAGAATAAGTACCCTCTTCCCaggattgatgAGTTGTTGGATCAGTTAAGAGGTGCTACTTAATTCTCGAAGATTGACTTGGCTTCTGGATACCATCAGATTCCTATAAAGGAGTCAGATATTCAGAAGACTACGTTCAGAACGAGGTATGGGCATTATGAGTTtgtagtgatgcCTTTTGGGTTGACGAATGCACCAGCGACTTTCATGAGATTGATGAATGACGTGTTCCGGGAGTATTTGGATGAGTTTGTGATCATCTTTATTGATGACAtattggtgtatTCGAAGAATTCTGACGAGCATGGTGATCACCTGAGAAAAGTATTGGAGAAATTAAGGGAGCAAAAGCTTTTTTCGAGGCTAAGTAACTGTAGCTTTAGGCAAAGAGAGATTGGAGTTTTGGGTCACGCAGTTTCGGAGAGCGGAGTATCTGTCGACCCAGAAAAGATTAaggccatcagAGAATGGCCGAGACCTGAGAATGCTACAGAGATAAGAAGCTTTCTCAGTCTAGCCGGTTATTATAGGAGATTCGTCAAAGgttttgcgagtATTGCTCAGCCTATGACAAAGTTGAAAGGGAAGGATGTTCCCTTTGTTTGGTCTCAGAAGTGTGATGAGAGCTTCTTGAGACTTAAGGAGATGTTGACTACTGCTCCAGTGTTGGCTTTACCCGATCCGAAGGAGCCGTACGTGGTTTATACGGATGCCTCGAAGTTAGGATTGGGTTGTGTTTTGatgcagcatgGGAAGGTTATTGCTTATGCTTCAAGACAATTGAGGAAGCATGAAGCTAATTACCCTACTCATGACTTAGAAATGGCTGCAGTAGTGTTTGCTCTAATGATTTGGAGATCATATCTGTATGGGGGTAAGGTGCAAGTGTTCACAGACCATAAGAGTCTCAAGTATATATTCACTCAGCCTGAGTTGAACTTGAGACAAAGGAGGTGGATGGAGCTTGTGGCGGACTATGACCTTGAGATAGTTTATCATCCAGGGAAAGCTAATCTCGTTGCGGATGCGTTAAGCAGGAAACGGGTAGCTGCAAGTACCGAGAGAGATGCTGAGGAGTTAATGAGTATGATTAGTACCTTGCAGCTATGCGTTATTTCTAATGAGTCAGAACCGTTGGGTTTAAAAGCGGTTAATCAGGCGGATATCTTGAGCAGAGTACGTACGGCTCAAGATAAGGATGAGGCTTTGATTAAAGCTTATAAAGATGAGAAAACCGAGTATGAGATTTCGAATAATGGAACCATCTTGGTTCATGGTCGAGTatgtgtgcctaATGATGAGGAGTTGAGGAGAGATATTCTTCGAGAGGCACACCAGAGTCGTTTCTCTATTCATCCCGGGGCGACTAAGATGTACCGAGATTTGAAACGGTATTAtcattgggttGGGATGAAGAGAGATGTAGCCAAATGGGTGGCTAGCTGCGAAACTTGTCAGTTGGTGAAAGCTGAGCATCAAGTCTCGAGCGGTTTATTACAGAGTTTACCCATTCCTGAGTGGAAGTGGGACATGGTGACAATGGATTTTGTGGTTGGGTTACCGAATTCTCGGGGCAGAGATGCGACTTGGGTTATAGTTGATCGTTTGGCAAAGTCTGCTCACTTCCTCGCGATAAGGAAGACAGATGGAGCTCGGGTTTTggcgagaaggTACATCAATGAGATTGTGAGGTTACATGGGGTACCTGCGAGCATTGTATCAGACCGTGATAGTAAGTTCACATCGGTTTTCTAGCGAGAATTCCAGAAGGAAATGGGTACTAAGGTACACATGAGTACAGCATATCATCCTCAGACGGACGGacagtcagagagaaccaTTCAGACTCTTGAGGATTTATTGAGGATGTGTGTGCTGGATTGGGGTGGCATTGGGCCGACTACCTGAGCTTGGTGGAGTTTACGTATAATAACAGCTACCAAGCTAGTATCGGAATGGTAGGCTATGCAGAACGCCATTATGCTGGACTCAAGTGGGGGAGCGAAGCATGTTTGGCGAGGGCATTGTACAGGAGACTACGgaaaagatccgAGTCTTGAAGTTGAATATGAAGGAAGCTCAAGACCGTCAGAAAAGTTATGCGGATAACCGCAGGAAAGAGTTGGAATTCGCCGAAGGAGATATAGTTTATCTCAAGATGGTGATGCTTAAGGGTTCCAACAGGTCTTTTTCCGAAAGTAAGTTAAGTCCGAGGTATATGGGACCGTTCCGAGTGGTGGAACGAGTTGGTCCTGTTGCCTATAGGCTGGAGTTGCCAGCGTCTATGCAAGCATTTCACGATGTTTTCCACATTTCAAAGCTGAAGAAATGCTTGCATAGGGACGATCAGGTGTTATAGGACATTCCACCTGAGTTATCACCGAGCTTGAGGGTCGAGGCAAGGCCCGTGAAGATTCTTGATCGTAGGATCAGGGTTGACGGGAGGAAGAGAACTCCcgagattaaggTCTTGTGGGATTGTGACGGGATTGAAGAGAAGACTTAGGAACCGGAAAGAAGAATAAAGGCCAAATTCTCCAAGTGGTTTGAGAAACAAGCCGAGACTTAGATTCGAGGACGAATCTAATTAAGGGGGGAGAGA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_64

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

174

Start:

604347  

End:

604520

Strand:

+

>Scaffold10040_LTR-Gypsy_64

TATGTTCATGGCCGTGAGATGGGACGACCGTCTCACTAAGCATTATCAATGCTTACGCGCCTCTTTTGGTGCAGGtaaagagaagtcttaagtcttggaacgcgtggaaccaaggccgaagggagggaaaaggatgatctagacgggctctcgtatcttgtgtttgggttgttt

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_65

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

271

Start:

606038  

End:

606308

Strand:

+

>Scaffold10040_LTR-Gypsy_65

gcacagcagggggtgcttacttttatgatccgcggagtgagataccgtcttcccttccaggatctttgcagcatctacggtttccgtagaaacttctcccgctgcgagctgcccaccaagttcctagacgtccaaaacttcTGGCGGCATTTCGGTCATGGGCAATATCACAGCAAGACGACCACACAGATAGATATCCGCCATCCGGTCCTGCGATGCCAGGCTCGGATCCTGAGCAACACGCTGATGTGCAAGATGGAGCCCAACAAGA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_66

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

194

Start:

610472  

End:

610665

Strand:

+

>Scaffold10040_LTR-Gypsy_66

TGGAGATCGAGATTGGAAAGAAATTTCCACTCTGTAAATGCTCGGAGGAGTATGAGTTGATCTCTTGGTGCATCACTTAGAGGGAGATGCAcatatgtggtggagtagtgtattggctaggaaagccaacggtgtaggcatctggggagttttagaggtgaggaataagtttgatgctagagtgcttccttcag

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_67

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

150

Start:

612829  

End:

612978

Strand:

+

>Scaffold10040_LTR-Gypsy_67

GTGGTCtcagaagcgtgacgggagcttcttgagacttgaaagaatgttgactggctccggtgttggcttaaccggactttaaggagccatatgtgattgatacaggtgcctcgaggctaagtttgggttgtgctctaacgcagcatggga

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_68

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

886

Start:

613003  

End:

613888

Strand:

+

>Scaffold10040_LTR-Gypsy_68

agagatgctacgggcttggtgagtacgattagtacttgttgctacgtgttattttcgataagttagaaccgttgaggtttaaagcggttacccaggctgatattttgagaagagcgcgatgtgctcaaaggaaaagatgagaattaattagggcttctaaggacaagaagtcCGAGTATTGGGTTCTGAATAATGAAACCACCCTTGGGAATGGTCGGGTTGTGCGCCGAATGATGAGGAATCGAGGAGAGATATTGTTTAGGAGACACATCAGGGTCGATTCTCTACTCATCCCGGGGCGACAAAGATGTACCGAgacatgaagtggtactatcattgggttgggacgaataggaatgcgaccaaatgggtggctagtcttgagactcactaattagtgacaattgagcatcaaatcccgagcgggttattacagagtttacccattcctgagtggagttggGATAGGAGTACGATGGATTTCGTAGTTGACTTACCGCTTTCTCGGGACAACGATGCTATCAGGGTTATTATGGACCGTTTAACCGAGTCCGTTCACGTTCTCGCCCTAAGGAAGTCAGGTGGAACTCGAGTTTTGGCGAGGAAGTACATCAGTGGGATGGTGTGGTCACATGGTTCACCTATGAGTATAGCGTGTTATCCTTTTATGACGGGTAATCAGAGAAAACCATTTAGACTCTCGAAAATCTATGAGGGATATGTGTGTGTTAGATTGGGGTGGCCAATGGGCCGATTACCTGAGCttggtagagtTTATGTATAATAACAGTTACCAAGTGAGTATAGGGGAGGGCACCATACGGGGCTTTGTATAATAGGCCTTGCATGATGCCATTATGCCGAACTCAAGTGGGGGAGCAAAGCA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_69

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

108

Start:

625485  

End:

625592

Strand:

-

>Scaffold10040_LTR-Gypsy_69

TAAAAACGTGTAAAATACGATGTTATCAACTCCCCCACACTTATCTTTTGCTCGTCCTCGAGCAAACAAAAGTCAAGCATGGTGAAGTTATTTTATTAAAAGCAGTAA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_70

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

353

Start:

626822  

End:

627174

Strand:

-

>Scaffold10040_LTR-Gypsy_70

TTTGGCCAATCGATGACCGCACCAACTGTTGCTAGGAACGGTCTACCAAGGATGAGTTCAGTGTGATTATCTCCTCTTATTTTGACTACATGGAAGTCAGTAGGAACGCAACAGTTCACAATCCATATGATCACATTTTCAGCAACTCCGTATGAACGCATCGCATCGGCATTGGCGAGCCTGATCCGAATTGTTGACCTTTTAAGCTTTGTGGATTCCCAACATCTTTGCTCATTCCATGGACATGACGTTTATGCTTGCTCCTGAATCACATAAAGCATCATTGaaagtacgaccAAGTATAGAGCATGTTACCTTGTATTGTCCAGAGTCATCTCTTTTGAAGACTGTTG

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_71

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

973

Start:

628451  

End:

629423

Strand:

-

>Scaffold10040_LTR-Gypsy_71

tgaaGGGGTTGGTGCCCTCATGGGTGGGTACGTCTGATCATGTGGATTCTCCACATTGTTGCTTCGGTATGAGAGATTAGGGTGGTTCGGGTAGTTAGAGTTGAAACCACCTTGTCGAAGTTACCGACAAAATTCACCTCACACTCGTTCTCTTCTCTTgcctcctcgtcAGCTTGTGCCCTTGCAGCATCCAACTCGTCTACAAAGTGAACATGTCTCCTTATCACTTGTAGTACCTTGTCCAACTTGTCGTTTAGTGCTCTCATGTCAATCTTCATCTTATCACCTCCATCATCGGTTATACTATGATCTCGACGATCATCGTCTCCTCCGCAGTTAGTGTCACTTTGCGCCATGTTCTCCACCAATGTCATTCAATGCTCAGCATCTTGCCCTAAgaagttaccgtTGCATGCGGTATCAAGTAGCTCGCGATACTTCATCAAGAGTCCTCTGTAAAAAGTGCTCAATAGCGACTCTTCACTAAATCCATGGTGTGAGCATTGAGATAAGTATCCCTTGAAGCACTCCCATATCTCTCCAAAACTTTCTGAACCTTTTTACACATAGCTCGATATCTCATTGCGGAGTCGAGCAGTCCGAAAACTTGAGAAGTACTTCACAAGGAACACCTTCTTGCATTGCCCCCATGTTAggatcgacccaGGTGGTAGACCTTTCTCCCATTGTTGTGCTTTGTCCCAAAGAGAATGGGAATAGACGCACCTTCAGAGCGTCCTCTGAAACTCTGTTAATCTTCACTGTACCACACAACTTATCGAATTGATCCATATGATCAATTGGATTCTCCATAGGCAACCCATGAAATTTGTTGCCTTGCAACATAGTAATCAAGTCTGACTTGATTTCAAAGTTGTTGTTCGCAACTGGTAGGGCGAGAATCCCAGATCTTTAAGCCACAGAAATAGGCTCATCAATTGTACCAATAGTCGGGGCGACTCTTGGTTGGCGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_72

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

153

Start:

633374  

End:

633526

Strand:

+

>Scaffold10040_LTR-Gypsy_72

TGATATGTCTATATTTTACATGGTTTTAGCATGCATTTATCACCTGTTTAGCCTTGATTATTAGCATATTCTtagcatttgtCTCTAGTTTTGCATACTTAGAGTGTTTGCATTAGGTTTTCATGCATTTTGCATTTTGGAGCCGTTTTAGGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_73

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1005

Start:

633994  

End:

634998

Strand:

+

>Scaffold10040_LTR-Gypsy_73

GTTTAATTTCTTCTATTCCATCATTTCTCTTCCTTATCTCTTTACTTATGCAAGTAATTTCGTTTTCTGGGTTTgtgattatgctgttcttcatgtgttctgagtagtcattagggttcttgaggatgggttagattaggtgtggaatcttagtctcctaggtggtttaagagtagattgcttgatttcccttctagattagtgttcttaatgctaataactctctgatcaattgaaattagaacATAGGTTTTTCCACACCCAGAAGGTGTTTGATGAAATGCCTGACTGAATTTTAGCCTAAGGGATTAGTTGTCTAGGGTGTTTATTGACTTTAACAAACTGAATCTCAATGCCTGTTATTCTAGATTTCGCTAAGGGAttaggtctggaactagattagcttgaggttatcTGTCACGGAAGTGGATTTAGCTGCTTATGAGTTTGTTGTCTAGGGAATAGTTTGTTTAAGTTTATTAAACCATCTAGGTAGATTAAGAGGATACACTGAGTCTATAACCCCCATCCTTAAGAGCTTATTTTCCTTGATTGATTTCTGTTTCATTATCTTGCTAGTTTTTTTCAGTAGTTATCATTCTGCTATTGCTCTGTTTTCATTTTGCTAGTTACTACTAGTCTCTGTTTTTAGTATCTGTTTTTAGTCTCTGTTAGGTTGGAAGCTTCACATCTCATTGCTTGCTTGGCTTGACTTAGACAGTTTGATTGCATCCTTCTTGGTTAATATCGCACCCATTTGGATTGACACctttctgtattacaatgacatgaatatgcattaaggcatttgacagatagcataaacataaaaattTGCTATATCAAATTGGCGCCGTTGCCATTTGGGTGTTGTTTGTTACAATTTGGATTTCAAATCGTTTTAGATCAAGTTCTTATTCGATCTACTCTGTTACTGACTTAGTTTTTCCTTTCTGTCTCTTTGTATTTCAGGTACGACTTGACTCGATCTCACTAGCTCGACCA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_74

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1655

Start:

635254  

End:

636908

Strand:

+

>Scaffold10040_LTR-Gypsy_74

ATTGGTGCGGGAGATGCtcccaacactcACACCAACAGGCAAGGGATTGTACATCCTACAGTCCAGAACAATAACTTTGAGATCAAGAGTGGCTACATAGCTATGGTGCAGAGCAACAAATTCCATGGGCTGCCTATGGAAGACCCTCCTGATCATTTAGATGAGTTTGATAGGCTCTGCAGTCTTACCAAGATCAATGGAGTCAGTGAagatggtttcaagCTGCGACTCTTTCCATTCTCTCTTGGTGACAAAGCCCATCTCTGGGAGAATCAACCCCATGGCTCTATCACTTCATGGGATGATTGCAAGAGAGCTTTCCTTGCcaagttcttctccaatgctcgaacagctcgcctccgaaatgagatctccagattttctcagaaagatggggagagtttctgtgaatgctgggaacgattcaaaggctacaccactcaatgtcctcaccatggtttcagcaatgagtccctactcAGCACACTTTACAGAGGAGTTCTCCCTAAGGTCCGAATGCTTCTTGATACGGCCAGCAATGTTAACTTCCTCAACAAAGATGTTGGTGACGGCTGGGAGCTTATGGAGAACCTTGCCCAATCTGATGGTAACTACACTTCTGAGTATGATAGAAGCGTGCGGAGCAGTGTTGATTTGGATGAGAAGACTAGGAAGGAAATTAAGGCTCTGAATGCCAAGATGGATCAAATACTCCAGCAGAGGAAGCAAGTtcactttgctagtgaggatacagtttttcaggttcAAGATGGGGAGGAAGATGATATCGAAGAGGTCAGCTATGTCCAGAATCAGAGTGGCTACAACAAAGGTTTCATCAACTACAAGAACATCCCGAATCTCTCTTTTAGAAGCACCAATGTTGCCAACCCTCGGGATCAAATTTACCCGCCTCAGCAACCACCGCCCCAGTCCAAGCCTTTTGCTGCTTACAACCAGAATCAGAGTTTTGTCCCTAAGTAGCATTACTAGACCAGCTATCCGCAACAGGGAGTCATGGGTGCCCCACCTAGTTTCACATCTCACCAAGCTCAGCCTTCTACCGCTCCAGATCATCAGACGATAAACCTGCTCCAACAGATTCTTCAGGGTCAAGCAGCTAGTGCAATGGAAGCTGCTAAGAAACTTGGTGAAATCAATACGCAGATAGATTACAACTATAATGACCTCAATAACAAGTTTGAGTCATTGAACTCAAAGATCAAGTACATGGAGGGCAGGACTGCATCTACTTCTAGCACATCACAGCTCCCAGGAAAAGCTGTCCAAAACCCAAAAGACTATGCTCACATCAATGCCATCACTTTACGAAGTGGAAAGGAGTTACCAGAGAGGGAAGGTTCAGTTAAAGTCACTGAGGACAATGAGGTTGAAGATGGGGAGGATTTGAGCTGCAAAGAATACAAAAAAACACGTCTGGAGGCTGACTCTAGCACCAAACTCGACCAAACTGGTCGAGCCAGCCCTCCAGCTGCGCCAAAACCAGTGgttttagagaaaaagaaagcaccctttgtccctcctccttacaaacctaaactgcctttcccaaaacgattcaaaaaggaaataATGGAGAAGTATAGAGCGCTTTTTGACAAGCACATGAGGGAAGCAGAGATCAGGATACCTCT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_75

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

720

Start:

651789  

End:

652508

Strand:

+

>Scaffold10040_LTR-Gypsy_75

AGTACGGGGTTAATCATCGTGTTGCTACACCATATCAACCTTAGACAAGTGGACAAGTTGAGGTTTCAAACAGGCAGATCAAGGAGATTCTTgagaagactgcgggtacttcgcggaaggactggtctactaaactgaatgatgcgctctgggcatacagaactgctttcaaaacaccgctggggactacgccatttcacctgctgtatggaaaagcatgtcatcttcctgttgaacttgagcataaaggaatctgggcgacaaggctactcaactacgacatcaaacctgctgctgagagaaggttgattcagttgaatgagcttgatgagatcagatatcacgcctatgagaattcgaagttgtacaaagaacgaaccaaggtccatcatgataagaagATCCTTACACGACACTTCGAGCCAAACGACCAGGTCCTTCTTTATAACTCTCGTTTACACTTATTTCCTGGAAAACTTCGCTCTCGTTGGTCAGGTCCTTTCACCGTCAAGGAAGTGCGACCACATGGTGCAATAGTGCTGCTTAATTCGTCGGGAGACGAATTCACTGTGAATGGGCAAAGGGTCAAACATTATTGGGCGAAagccgaaattccagcaggacagatcgtgcctctggctaatccacccgtcgcctaaccgtcgttgaagtcaggctcgtgacatTAAACAAGCGCTCGGTGGGAGGCAACCCACTGGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_76

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

2503

Start:

656878  

End:

659380

Strand:

+

>Scaffold10040_LTR-Gypsy_76

ATTTCCCATTGCCATTCATTGATCAGATGTTAGAAAGACTTGCAAATCACTCTTATTACTGCTTCTTAGATGGGTATAGTGGTTTCTTTCAAATTCCAATTCAtcctaatgatCAGGAAAAAACTACTTTTACTTGCCCATATGGAACATTTGCTTATTGGAGAATGTCTTTTGCTACTTTTCAGAGATGCATGACCTCTATATTCTCAGATTTAATTGAGGAGACTGTggaagtattcatggatgatttttccgtgtatggctcctctttctcctcctgcttgttgaatcttTGCAGGGTGCTTACTAGGTGTGAAGAGACAAATCTAGTTCTCAACTGGGAAAAATGCCATTTCATGGTTACAGAAGGAATTGTCTTGGGGCACAGAATTTCCGAGAAAGGGATAGAGGTAGATAAAGCCAAGGTTGATGTGATGATGCAGCTGCAACCGCCTATGACTGTCAGAGATATCAGGAGTTTCCTTGGGCATGCTGGGTTTTACAGAAggttcatcaaggatttctcaaagatagccagaccactcactaggctattatgcaaggaacaagaattcatctttgattctgagtgtttgaaagctttccagctgattaaggaagctttggtctcagctccaatagtccaagcaccaaactgGGATTATCCGTTCGAAATCATGTGTGATGCTTCGGATTATGCTGTGGGAGTTGTTTTGTGTCAAAAGATTGACAAGAAGCTGCATGTGATCTACTATGCAAGCAGAACACTTGATGAAGCTCAAGGGAGATATGCAACAACGGAgaaggaattactggctgttgtctttgcttttgagaagttcagaagctacctagtgggttccaaggtgatagtctacacagatcatgcagcactcagacatatctatgcaaagaaggagactaagcCAAGACTGCTCAGATGGATACTTTTGCTACAAGAGTTTGACATGGAGATTATTGACAAGAAGGGTATAGAGAATGGTGTAGCGGACCACTTATCAAGGATGAGGATTGATGATGCAGCACCAATTGATGATTCCATgcctgatgaacaattcatggaagttgtcatgatagtagaggaaaagagaccctggtatgcagattttgccaattaccttgtaagCGGCGAAATTCCTGAAGGTCTTGATGCTTACAGGAAAAAGAAGTTTCTGAAGGATGTGAACCACTACTTCTGGGATGAGCCCTACTTATACAAGAGAGTTTCAGATGGTCTATTTAGAAGGTGTATAGCTGAAGAAGAGGTAAGGGGAGttctagagcattgcCACGGTTCAGTATATGGAGGTCACTTCGCTACATTCAAGACTGCGCAGAAGATGCTGCAAGCAGGTTTATGATGGCCATCGATGTCCAAGGATGCTCAAGCTTTCATCACCAAgtgtgatccttGTCAGAGAATGGGTAACATCAGTAGAAAGAATGAGATGCCTCAGAATCCAATTCTGGAAGTTGAATTATTTGATGTGTGGGGCATCGATTTCATGGGGCCTTTTAACCCACCATCTCATGGGAACAGCTACATCTTGGTGGCTGTAGATTATGTCTCCAAGTGGGTTGAAGCAATAGCCTGCCTGCCAATGATGCAAAGATAGTTTTGAAGATGTTCAAGAGTATCATtttccccagatTTGGAGTGCCAAGGGTAGTGATCAGTGAAGGAGGATCTCACTTCATCAACAAGCTCTTTGAGAATCTATTGAAGAAGCATGGGGTTAAGCACAAGATAGCTACACCATATCACCCTCAAACCAGTGGGTAAGTGGAAGTGTCCAACAAGCAGATCAAAACCATTTTGGCAAGAGTAGTAGGGGTTTCAAGGAGAGATTGGTCTTCTAAGcttgatgagactctctgggcttatcggACTGCATTCAAAACACCCATTGGGAGAACACCATTCCAGCTACTCTATGGTAAGGCTTTCCATCTGCCTGTGGAGATTGAGTacaaggcattgTGGGCAACAAAACTCTTGAACCTAGATATCAAGACCGCTCTGGAAAAGAGAGCATTGGATCTGCATGAACTAAAGGAGATCAGGTTGGATGCTTATGAGAGTTCTAAAATTTATAAGGAGAGGACTAAAGCCTTCCATGACAGGAAGATTTTACCCAAGGAATTCAAAACTGGTGATCAGGTCCTCCTATTCAATTCTAGACTCAAGTTGTTTCCAGGAAAATTGAAGTCTAGATGGTCAGGACCATTTGTTATCAAGGAAGTTTCACCATATGGGGCAGTCACCTTGGTCGAAAAGTACGGAAAAGAATTCACAGTGAATGGGCAAAGGATCAAACCGTACATGGCTGACAGCATCATTCTAGAAGGAACCTCAATTCCTCTGGATGAACCTCTCCTTGCTTGAGTAAAACaggaagtcaagcttagtgactataAACAAGCTCACTTGGGAGGAAGTTCCATGTCTATCCTTGTATATATTGCTTAAATTTTTTTTTTA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_77

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1736

Start:

660128  

End:

661863

Strand:

+

>Scaffold10040_LTR-Gypsy_77

TACACTCGAGAAAGCATGGAGGATTCAAtctcctccttCTTCTCCAACCCTTGAGGTACCTGTTCTGTCTATCCCTGTATATATCATTTGCATTTCTTTCTTGCTTTTTGTTGTTTCTTAATCCTtctttctaaatttttattacacaagggactgtgtaatttaagtttgggggaagggttaagatctgtttgacatgtttattgtgttcttattttccattttcgtGCATATTTGAGTTTGCATGCATCTAAGGCATAGAAAAACCAAAAAAATTTGAAAATTTTTCAAAAATGATTACAAAAACAGAGTGTTCATGTAGTTGCATTAACATTTTAGGATTGAGTCTAGATTGTTTTCATATAGGGCTGTTGCATATGcataggggattatgatgattatgaccttgcaagcttgctgatttaatatgataatttcaatgccctcgtttctagttgtctaatgcattgttaatgaacttgaagtaagactgcaccatactttgaatgcacaactagattattgtctcaattgaagcatgctgtgatttgataccattccctatctatttgaacctgaacttgacttataattatcatgtctatgcactgcatctgaactcatggataccatatacatacttggattttctttcacctgtttaccactcttgctaatccaagtagctgttctcatCATTAGAACAGTTTTACCATGCCCTTAGCCTAGCCTTCTTTCAAGCCATGCTATTACTTTAGTGAGTGTGTGAGGCCTATTTCTGAATGAGATTGGTAGAAAGTGTTAGGTTtgagccgacaaggatagagtctcaTGTAGTTCTGGTTTGCAATTTTTGAATCAGATAGGACTAGGTGGGATCTTAATCATTGGGCATAGGGTTTGGTTCTGTGAGAAGAAAGAAAGAAAACTTGGAGAaaaatgaaagaAAAAGGTTAAGAGTTCTTAGGAGAGGAATAATCTGAAGTGTCTTAATCTAGTAAAGGATTTGGAGGTGTGCTAAGTATAAGAAAATAAAGGGCAAAAAGCTTAAAGTCTGAAAAACATAGAAAAATGCCTAAGCTGGTAATGAAAAAATAAAAAAAAGAGAGCCATAAGAAACCTCAATCCGCTAGAAGTGTATAAAGCCTCTCCTAGAACAAGAATAAAAGAAAAGAAATGAATCTGATCCAAGAAAAACAAGGCAAAAACGCCTAATGTGTTAAGGGTAGAATTAGGGTGACTTTCTAGGTTTAGAACTATAGGTTAAGAAGACTTATGTATGGTTGGGTAGATGAGAGTCTATtcttgtatgcaTAGGTTGGTTCTTACCTTTAGCATTCTACTGAAGCTCATTCGCTTTCTTGAGAGATCCCTGCTTTGAAATGATTAACCATATGGAAGGGACCATCTTTGTctcttgaccttacccttaaccaaatgagttcattgaatgtgcatagcttgattcatggtttctgcttaattgaatattaaagggaatggtagatttgaatgcatgtctaggttgagacttgattgaaattgtgctgtgaagagtatggctaaagtttttaagtagagttcatatgctttgcattctagaactagcaacttggacattgagataatctattatatcagcatgctttggttctgaatctccactttcaaacctcttctccatcttattcttatCTGTTTGCTTGAGGGCAAGCAAAGACTAAGTTTGGGGGAGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_78

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

173

Start:

661864  

End:

662036

Strand:

+

>Scaffold10040_LTR-Gypsy_78

TGATATGTCGATATTTTACATGGTTTTAGCATGCATTTATCACCCGTTTAGCCTTGATTATTAGCATATTCTTAGCATttgtctctagTTTTGCATACTTAGAGTGTTTTGCATTAGGTTTTCATGTATTTTGCATTTTGGAGCTGTTTTAGGTACATTTAAGGGATTTTGGA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_79

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1002

Start:

662380  

End:

663381

Strand:

+

>Scaffold10040_LTR-Gypsy_79

ACTTTCCTATTTTGTCTTTTTGTGTTTTAGGGTTTTTTATGTTTTAGTAtaaataccccTTGAGGGTTTAAGACAAAGAAGTTTTTTATGCTTTAGAGAAGTTTTAGCTCTCTCTTTTTCTGTTCTTGCTTTCTAGATCTTGTAACTTTGATTCTACTTGTTATCTCAGTTTGATTTCTTCTATTTCATCATTTCTCTTTCTTATCTCTTTACTTATGCAAGTATTTCGTTTTCTGGGTTTGTGATTATGCTGCTTTTCATGTGTTCTGAGTAGTCATTAGGGTTCTTGAGGATGGGTTAGATTAGgtgtggaatcttagtctcctaggtggtttaagagtagattgcttgatttcccttctagattagtgttcttaatgctaattactctctgatcaattgaaattagaacataggtttttccacacccagaaggtgtttgatgaaatgcctgactgaattaattctagagatttacattcctagcctaagggattagttgtctagggtgtttattggctttaacaaactgaatctcaatgcctgttattctagatttcgctaagggattaggtctggaactagattagcttgaggttatctgtcacggaagtggatttagctgcttatgagtttgttgtctagggaaTAGCTTGTTTAAGTTTGTTAAACCATCTAGGTAGATTAAGAGGATACACTTAGTCTATAACCCCCATCCTTAAGAGCTTCTTTTCCTTGATTGATTTCTGTTTCATTATCTTGCTAGTTTCTTTCAGTAGTTATCATTCTGCTATTGCTCTGTTTTCATTTCGCTAGTTACTGCTAGTCTCTGTTTTTAGTATCTATTTTCAGTCTCTATTAGGTTGATAGCTTCACATCTCATTGCTTGCTTGGCTTGACTTAGATAGTTTGATTGCATCCTTCTTGGTTAATATCGCACCCATTTGGATTGACACctttctgtattacaatgacatgaaTATGCATTAAGGCATTTGACAG

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Gypsy_80

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

122

Start:

671603  

End:

671724

Strand:

+

>Scaffold10040_LTR-Gypsy_80

TGGAGATCGAGATAGGAAAGAAATTTCCACTCTGTAAATGCTCAGAGGAGTATGAGTTGATCTCTTGGTGCATCACTTAGAGGGAGATGCacatatgtggTGGAGTAGTGTATTGGCTAGGA