ID:

Scaffold10040_LTR-Copia_41

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

91

Start:

521452  

End:

521542

Strand:

+

>Scaffold10040_LTR-Copia_41

ATTTATATTtattgtggagctcactgtcactatgcgtgcatagtaactcattttgttttcctataaatagaggcttccgcttaatgtaaaa

ID:

Scaffold10040_LTR-Copia_42

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

96

Start:

521648  

End:

521743

Strand:

+

>Scaffold10040_LTR-Copia_42

cgttatcaGCACGATCGCTCCGATCGAAACTGAAAAATTTCCGCAAATCACTATTCACCGCCGGAGTACTGTTCACGTCGGAGGTACTGTTCATCG

ID:

Scaffold10040_LTR-Copia_43

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

155

Start:

549909  

End:

550063

Strand:

-

>Scaffold10040_LTR-Copia_43

tcaagaacacaatcgaaggaagaaataggaaacagattaaaaacagagacacgggagtttgattacctagttcacaaagatcaaggttacgtcgggggcgaattcgtcttcggcaatccactaaaaacaaagagagaagattacacagagctcaa

ID:

Scaffold10040_LTR-Copia_44

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

4131

Start:

550306  

End:

554436

Strand:

-

>Scaffold10040_LTR-Copia_44

CTCCACCTTGATTCAAATCTCCTTCTTCTTCATGATGAATTACACTACTTGAGACTAACATTCGGCAATGGCAAGTTCAGGACTCACCTAATTAGTTTGATGCAGTCAAGAGCCGCTCCAAACTTCTGTACCGGTATGCTCTTTGTCAGCATATCTGCTGGATTCCTTGATGTGTGAATCTTTTTGACCTCTACATCTCTACCTTCAATAACATCCCTAGTGAAATGAAACTTCACAGCTATGTGCTTAGTTCTTTCATGGAACGTATTGTTTTTAGATAGACAAATAGCTGATTGAGAATCACACCAAACTGATGTTGCTACAATATCAATCTTCATGTCTTTTAGTAAGCCATTAATCCACAAAGCTTCCTTCACAGCTTCTGTCAAAGCAATATACTCTGCCTCCGTTGTAGATAGCGCCACTATATGCTGCAAGTTGGACTTCCAGCTTACTGCATTACCACCCACAATGAAGATATAACCACTGAGTGATCTCCTTTTATCAATATCAGCAACAAAATCTGAGTCACAGAACCCTTGAATCTTCATATCTTCTCCCTTAGTGTATAACAAACTCAATTCTGAAGAACCTTTCAGATATCTCAATAGCCACTTGACTGCTTTCAAGTGAATGTTGCCTGGATTGCTCATAAACCTGCTAACCAGTACAATTGCATAGGCAACATCTGGTCTAGATCCAATCATAGCATACATAACACTACCTACTGCACTAGAATAGGGAGTTACATATGTATCCACACACTCATCACTATTCTTAATTGTAGACAATCTAAAATGTGAACCAATTGGTGTGCTAACACTTTTTGATTCACTTATTTGAAACCTCTGCAAAACCTTCTGCAAATATCCTGGCTGAGATAATCTTAGTGTTCCATTCTTCTTATCACGTATAATATCAATTCCAAATATCCTTCTTGCCGGTCCTAAGTCTTTCATCTCAAATTCAGAGCTTAGAGATTTCTTAAGACCATTGATATCACTTATATTCTTAGCTGCTAGCAGAATGTCATCTACATAAAGAAGTAGGTAGAGAACATCATTTGGCCTAAGTTCTTTCACATAAACACAAGAATCATGATCTGACCTTGTGAAGTTTTGTTCCAACAGAAATAAGTTGAATTTTCTGTTCCATTGTCTGGGAGCCTACTTTAATCCATAAAGCAATTCCTTGAGTTGACAAACCTGATCTTTCTCTGAATCTATCTCAAAACCCTTAAATTGTTCCATGTACAGAGTTTTATCTAGCTCACCATGTAAGAATGTCGTCTTAACATCCATTTGTTCAAACTCTAGCTCCTTGTTCACCACCAAAGACTTGAGGACTCTGATAGAAATGTGTTTGACTATTGGTGCAAACACTTCTTAATAATCAACCCCTTTTCTTTGAGTAAACCCTCTAACAACTAACCTTACTTTGAATTTTTCAGGTTCTATACCAGGGATTCCAGGCTTCTTTTTGTAGAGCCACCTGCAGCTTATGACCTTTTGATCCTTTGGTCTGCAAACTATGTCCCAAGTCTCATTTTTCATCAATGATTCCATCTCCTCATCCATGCCCTTCTTCCAACTTAGCCATTCTTGACTTCTCTTAGCATCATGGAAGCACTGAGGTTCATCATTGTCAATCTCTTCTGCTGTTACTAGTGCAAAAGCAAACTGAGTGTAATCATTTAGTCTTGCTCGAGCCCGTGGTACCCTTCTTTCTCGATTTCTAGCTAGTTGATATCCAATGAGATCTATCCTACTTAGTTCTAGATCCTCTGCATCACTTGCTTTTGCTTTTGAATCACTAAGAAGTTCTACATGAGCTCCACCTGGCTCAGAACTCTCTGCAATGTCTTTTCTTTTACTGGTGACTTCAGTGACAACTTTTGTCATTGACATTGCCTTATCTGTCTTCTCTGTTTCTGTCTCAGGTTTCAGGTCTTTAAAGACTACTTCTTCATCGAAGATGACATTCCGGCTTATAACACATTTTTGCTGTTCAATAAGACATACACGATATCCTTTTGTACCCTGAGGATATCCCAGGAACACCCTTTTTAGAGCTCTTAGCTTCAATTTTCCCTGGTCCTGATGCACGTAAGCAATAGAGCCAAATCTTCTTAAATGTGCATATCCTTATTTTCTATTAAACCACAATTCATCAGGAATATTGTGGTCCACTACAGATGAGGGAAATCTATTTATTAGATATGATGCTGTAGAAGCAGGTTCAGCCCAAAACCTTTCATCTAAACCAGACTCATTGAGGAGACACCTAACTTTCTCCATCACCATCCTATTTATCCTCTCTGCAACTCCATTCTGTTGTGGAGTGTATGTGCAAGTTTTGTGTCTCTTAATGCCATTCACTCGGCAAAACTCATCAAACTTGTTattacaaaactCAAGACCATTGTCAGTCCTCAAAGTTTTAACTTTCTCCCCTGATTGATTCTCAATCATTTCTTTCCATTCACAGAATTTTGCAAATGTTTCATCCTTAGTTTTGGGAAAAATTAACCAAACATTATGAGATTTATCATCAATTACAGACAATAAATATTGCATACCTGACAGTGACATAGTCACATTTGGAGAGCCCCATAAATCTGCATGAATGTAACTTAATAAGTCCTCAGTGTTATGCTTAGCAACCATTAAAGCTGAGCTTCTTAGCTTTTCCCGTTATACAGTGTTCACAAAATGGTAGCTCCACTGCATCCTTCTTAGCAATCATCCCTTTCTCAGTCAATATTTTCATACCATTCGGACTAAGGTGTCCAAGCCTACTATGCCACAGCTTGGTTTGATTCTTTACCTCTAGTGTGCTGCAATTTTCACTTGCAATAGTGTGACCATTCAAGATATACAAGCCATTTACTAGCTTACCTGTCAAGGCTGTCTTACCATCTCTGTGAAACCTGATTTGACCATTAGTGCCCTCATGACTGAAACCAAGCTGGTCTAGAGTTCCAGTAGATATCAAGTTCCTTCTCAAGTTTGGTACAAATCTGACATTTTTCAACATCCTTATGGAGCCACCAGGAGACTTAATCTTAACCGTTCCTATTCCTCTGGATTCTACACAATGATTATCACCAAGAAGTATCATTCCAGATCCTGTTTCCTTAAAATCACAAAGCCATTCAAGTCTTGAGGTCATGTGATAGGTACATCCGGAGTCAATCACCCACAATTCTTTCTGTTCTTCTTCATGAACACTTAGAGCTTCTGAGTATATCAACTTCTCTGTAATGATCCCTGCTTCACCCTGGTCTTCACTTTCTTGCTTCTTTTTCCACTGAAAACAGTCCTTCTTGATGTGTCCTGACTTTTTGCAGAACCAACATTTTACTCTATCCCTGGAACCAGACCTGCTTCTGCTTTTACTTTTACCATTACCTTGTCAACTTCTATTCTGTGATCTATCCCTTTCCATTGTGACTAGAGTTGTTGATGATGACTTTGTCACGTCTCTGAGATCTTGCAATTCTCTTTCTATAGATATTGCAGATGACACCACATCTTGCAAGGATAAGGTCTTATTTACATACTTTGGAGTATGCTTGAGTTGATCATAACTTGGTGGAAGAGAATTTAACATCAAGATTGCTTGTACTTCTTCTGTTACAGAGATCTCAAGATTTCCAGGCTCAGCAACAAGCTTCAAGAAATCGTCAACGTGATCATTTATGCTCTTGATCTCTGTCATCTTGAAAGAATAGAACTTCAATTGACAATACACACGATTTGGTAGAGATGTCTCCATGTATAAAATATTGAGAGTCTTCCACATCTCTGCAGCTATTTCACAATGGTTGATCTTCCTTAAGACCGAATCACCAACATGCAGAATGATCTGACTCATAGCTTGTTCAGATTTATCGACCTTGATTGGATCAATAACTGTTTCCATGACAGGTTCCAACGCTGCCTTGGCTTCATCACCATCCGATGATTTCTTTCCTTCAACTTTGGATGATTGTATCATCTTTGTCATCGTGAAATCTGTTATTGCACTTTTCAAACCAAGAATGTTTAAGTGCGCAACCATCCGGATCTTCCATAACGAGAAGTCAGAGGATCCATTGAACTTCTCAAACTCATGCTTTGAATTCGTCAT

ID:

Scaffold10040_LTR-Copia_45

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

149

Start:

554570  

End:

554718

Strand:

-

>Scaffold10040_LTR-Copia_45

tcaagaacacaatcgaaggaaaaaatagaaaacagagtaaaaacagagacacgggagtttgattacccagttcaccaagatctagatgatcaaggttacgtctggggcaatccactaaaaacaaagagagaagattacacagagctcaa

ID:

Scaffold10040_LTR-Copia_46

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

177

Start:

572427  

End:

572603

Strand:

-

>Scaffold10040_LTR-Copia_46

TAGATTTGTATGATAATCATCCTAGTTGTGTCTTCCTTGACAAACAAAGTCTGATCCACTCAACCTCTTGTGTGCCTTTGATTAATCAGAAATGCAGTAAGTCTTTCATACCATGGACAGGGTGTTTGCTTCAGCCCGTACAATGTCTTTTGATGTTTATAGACATGATTTGGACAT

ID:

Scaffold10040_LTR-Copia_47

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

741

Start:

572643  

End:

573383

Strand:

-

>Scaffold10040_LTR-Copia_47

CGCTATTCTATACTGTTTGGTGAGTATCCCAAGAGGAACCCTCCTTCACTTCGAGAGTCAAACTTCCCAAGTTTATCCTTATCATTCATAATGTAGCACAAACACCCAAAGACCCTAAAATAGTTGAGGTTTGGTTTCTTTCCTTTCCATATCTGAAATAGTTGAGGTTTGGTTTGTTTCCTTTCCATATCTCATATGGAGTCTTCTCTGTGCCTATCCTCAAGTATACTCTGTTGATCACATAACATGCAGTATTGATTGCCTCAGCCTAAAATCTTTCGGGGACACCATTCCCATGGATCATAGCTCGTGCCATCTTCTGAAGAGTCTATTTTTTTTTTCAACCACTCTCTTTGACTGTGGTGTTTTGCGAGCTGAATATTAATGAATAATACCTTGAGTTTCACAAAACCTGTTGAACAGAGAGTTTTGGAATTCTCCTCCATGGTCACTTCTGATCTGCTTGATGCCCATCTTTTTCTCGTTTTTCAGCTGAAGTGCAAGAATTTTGAAGCTGTCCACCGTTTCTGTGTTTTTCCTTTAAAAAATGAACCGAGGTATATCGTGAGAAATCATCAACTAAGACAAAAACATCCAACGATACTCAGTCTGTATTGGCCCCATTAAATCCATGTGTATGAGATCTTGAACTTGAGTAGTGTGAATCCCTTCCACCTTTTTGTGTTGAACTTTGATTTGTTTCCTTTGATTAAAGGCTTCACTGACTATTTTGTCAACATG

ID:

Scaffold10040_LTR-Copia_48

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

206

Start:

597074  

End:

597279

Strand:

-

>Scaffold10040_LTR-Copia_48

ctggttgcaggtcaagggtggggatcgaccgatccaggtaggatcgatcgatcctatggggtcgttttggtccagagactttttgaggattcgggaTCGATCGATCTCGGCAAGATCGATCGTTCTTAAGGGGTCGATTTTGGCCAGAGACTTTGAAAAACTTGGGGGGGAAAACGAGTTCGATCGATCCTGGCAAGATCGATCGA

ID:

Scaffold10040_LTR-Copia_49

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

205

Start:

604665  

End:

604869

Strand:

-

>Scaffold10040_LTR-Copia_49

ctggttgcaggtcaagggtgGGGATCGACCGATCCAGGTAGGATCGATCGATCCTATGGGGTCGTTTTGGTCCAGAGACTTTTTGAGGATTCGGGATCGATCGATCTCGGCAAGAtcgatcgttctTAAGGGGTCGATTTTGGCCAAAGACTTTGAAAAAGTTGGGGGGGAAACGAGTTCGATCGATCCTGGCAAGATCGATCGA

ID:

Scaffold10040_LTR-Copia_50

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

141

Start:

604858  

End:

604998

Strand:

-

>Scaffold10040_LTR-Copia_50

AAGATCGATCGAGCTTAAGAGTCAGGATCGACCGTTCCTGAGAGGATCGATCGTTCCTAGGGGACGTTTTTGAGTCAGAAGCTTCAGGTCTGTTTTATGGGGttaggatcgatCGATCCTGGGTGAGATCGATCGATCCCT

ID:

Scaffold10040_LTR-Copia_51

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

232

Start:

610792  

End:

611023

Strand:

-

>Scaffold10040_LTR-Copia_51

GGATCGATCGATCCATATGACAGACCGATCGATCCCTTATGCCGGTTGTGTGATCAAGGATATTGTGGGAAGAGGATCGACCGATCTCAAGGGGAGATCGATCGATCGGGTGTACaagagagtttaagatcgatcgatccatggaaagatcaatcgatctggaagggtgtggtgatacggttcgttattcagtatccgagatcgatcgatcaggggacgtgatcgatcgatc

ID:

Scaffold10040_LTR-Copia_52

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

106

Start:

610919  

End:

611024

Strand:

+

>Scaffold10040_LTR-Copia_52

gatcgatcgatccatggaaagatcaatcgatctggaagggtgtggtgatacggttcgttattcagtatccgagatcgatcgatcaggggacgtgatcgatcgatcc

ID:

Scaffold10040_LTR-Copia_53

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

434

Start:

632111  

End:

632544

Strand:

-

>Scaffold10040_LTR-Copia_53

TCAACATGCTTCAGGTCAGGTACTCCTCTGATTGCTTCTTTACTCAGTAGTTTGGATAAAATCTGAGCATTCATGTGTCCTAGACGCAGATGCCACAGTACAGGATCATCCTTTTCAGCTTTCATGCATGTTGCTGGTTCCTCCCACATATAACAGTTGTTGCATGTTCGCACACAAGCAATGGTGGTACGGTTTCTGCCATCATTTGCCCAACATTTTACTTTGTGAATGCCCACATTCAAACCTTCATCGCATAGCTGGCTCACACTGATCAAATTTACTATTAACCCTTCTACAAAATGCACATTTGTGAGCTTAGATTTTTCTGCTTCTGTCAAATCTCACTTTTCCTTAATTTTATCCTTTGCTCCTCCACCAAAAGTGACTTTGCTCTCTTTAACGTCTGTGTAGTTGTTGAGGTTGTCTTGACTTCC

ID:

Scaffold10040_LTR-Copia_54

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

773

Start:

632582  

End:

633354

Strand:

-

>Scaffold10040_LTR-Copia_54

ACATACACTTGTGAATCTTGTCTCTGATTTGGATAGAATTTTCCTTATTTGAGCAGTTTGTTCACGCGATCAGCATACCGGTAGCAGTTTCTTTTGATATGACCATGACGTCCACAGTAGTAGCACTCATATCCACTCATGATCTTGTAGACATTGTTTTGACGTCTTGCTGGAACAGGTCATGTGCTGTTTTTCCGAAGAGCCTGAACCCTCTCAAAGGTTTCTGTCCTTCCTTTGACAAAATTTGTCTTCCCACTGGTTTCTCCTCCATTATATCCCAGACCAAAGTTCGATTTTCCTACACTTCCAGAAGCTAGAATGATTTCCAAATCTTTTGTACCACTGTTCCGCATATGAATCTTCTTCCTTGTTTCTGACAGCTCTTGAGTGAAATCTCTGTTTTTCTCAACTTCTCCTGTCAGTTCCTCTTTCAGTCTTGCGTTCATTCGTTGAAGTTGTGCAAGTTCCTTATTTTTCTCCAGCTCTCCTGTCAACTCCATTTGTAATTTCTTATTTTCTTCCTCAAGATCCAGCTTTTCTTTCATCAATGACACTTTTTCTTTGCTAAGAAACAGCCAATTGTCATACAAGATTTGAAACTCACAATCTACATCAATCTCCTTTTTATCACCTGATTCTTCCACAGATGTTTCAGAGTCACTGTCGGTTGTTTCATCTTCACCCTTGATGCTCCCCATGAATGCTACAAACCCTGTCACTTCATCTTCAGAGTCGTCATCGTCAGAGTCGCTTTTGCTTTAAACAATGTAGGA

ID:

Scaffold10040_LTR-Copia_55

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1055

Start:

663393  

End:

664447

Strand:

-

>Scaffold10040_LTR-Copia_55

ATAAAAATTTGCTATATAAGTGTGCTGATTGTACATTCTGCTTTTGTATGACCAATGCCCTTGCACCCAAAACATTTGAGTTGATCCCTCCTTTAAAATTTTGACAGTCAGCTTTCATATGACCGTACCGTTTGCATTCATGACATTGAATTTCAGCTTTCTTTCCACTTCTATCACGTTCATTTCCTTTTCCTTTCACGAAGGTTCTACTGCCTCCTTTCTCAACCTTCTTCAGTGCATGGTTGAAATTCTTAGCCATTAGACTTATCTGATTCTCCAATTCCTGAATTTTTAGTCTATCATCTGATGCAACTAGCGCCACTCCTTTGGATTCAACATTCTTCTCTGGTGTTATTTCCATCTCATGTGCTTGAAGCATTCCCACAACTTCCCCAAATTCAATGGACTCTGTATCCAATGATGTACTCATTGCAGTTCTCTTGCTTTCAAACCTTGATAGAAGACATCTAAGCAGCTTCTTCACCATTTTCTTGTCTTTGTATTTTTTCCTAAAATTTTCACTTTGACTCGCAATTGCACTGATTTTCCCACTGAATTCTTCAAGTGATTCGATTCCTCCATGGTGAGATTCTCAAACTTTGATGCAAGCATGTCGAGTCTAGAACTTTTTACGCTAGTTGTTCCTTCATTTGCTTTTGCAAGCTTGCCCCAAGCTTCTTTAGCTGAATCACAGTTTTGAACTCTCTTAAATTGATTCTCGTTGATAAAGTTAGAAATAGCTGAGAGCGCCTTTGAATTTGCAGTTGCTTGACTTTTTTCAGTGTCTGTCCACAAGTTTGCTGGATTGAGGACATCCTTCCCGTCTTCACCTCTTGCTATAGGAGGGCTCCATCCAGCGCTTACAGCCATCCAAGCTTCCACACTAATACCctgtatggctgCTCTCATCTTCACCTTCCAGTGTCCGTAACTCTCTTTTTCAGCATTATTGGTCGAGTTACAACGTACAACTCCTTGGAGTAGTCCATCCCTTCCGTAGGATCCTAACCTGTTGTTAACATACAACTTGGTTCAGATGCCCGCTCTAATACCAA

ID:

Scaffold10040_LTR-Copia_56

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

121

Start:

664638  

End:

664758

Strand:

-

>Scaffold10040_LTR-Copia_56

CTTTTTATTCTCATAAAAACGGCTAACCTCAAAAGCTCCTCAAAATACCCCTTTTATATTCATAGGGTTTTTAGGATCTTTTAGGTCGTTGATTTAGATGATTGATTTTGCCAAATCTTCA

ID:

Scaffold10040_LTR-Copia_57

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

180

Start:

671903  

End:

672082

Strand:

+

>Scaffold10040_LTR-Copia_57

TCTGTTTTCAAAACAGGGAAGGATCGATCGATCCATAGGACAGACCGATCGATCCCTtatgtcggttATGTGATCAGGGATATTTTGGAAAGAGGATCGACCGATCTCAAGAGGAAGATCGATCGATCGAGTGTCCCAGAGAGTTTAAGATCGATCgatccatggaAAGATCAATCGATC

ID:

Scaffold10040_LTR-Copia_58

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

232

Start:

671923  

End:

672154

Strand:

-

>Scaffold10040_LTR-Copia_58

GGATCGATCGATCCATAGGACAGACCGATCGATCCCTtatgtcggttATGTGATCAGGGATATTTTGGAAAGAGGATCGACCGATCTCAAGAGGAAGATCGATCGATCGAGTGTCCCAGAGAGTTTAAGATCGATCgatccatggaAAGATCAATCGATCTGGAAGGTGTGGTGATATGGTTCGTTATTCAGTATCCGAGATCGATCGATCAGGGGACGTGATCGATCgatc

ID:

Scaffold10040_LTR-Copia_59

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

236

Start:

688913  

End:

689148

Strand:

+

>Scaffold10040_LTR-Copia_59

AGATCGATCGATCCATATGTCGATCGATCGATCCGATTATTTTTCGTCCAAAAACAGGGCCATCAGATCAAAATAGAGGAATACAGATCGATCGGTCGTGAGTAGATCGATTGATCCGCCTACAAGTCAAAACACGGACCCATTAGCGATCGATCGTACCTAAGGTACCATTTTTGGTCACAGACTTCTGAGTCTTCTGAGATCGATCGATCCTGCAACGATCGATCGATCCTGCA

ID:

Scaffold10040_LTR-Copia_60

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

169

Start:

689110  

End:

689278

Strand:

-

>Scaffold10040_LTR-Copia_60

TGAGATCGATCGATCCTGCAACGATCGATCGATCCTGCAACGATCGATCGATCCTCCTACAGGTAAGTAATTCTCGACTAAATCGATCGATCGATCCTTAGTTCCCATTTTTGGTCAGAAGCTTCTGAGTCTGCCAAGATCGATCGATCCTATATTCGATCGATCGATC