ID Class Order Superfamily Length Start End Strand View
scaffold_8_LTR-Caulimovirus_81 RetrotransposonsLTRLTR-Caulimovirus12777840379679+
scaffold_8_LTR-Caulimovirus_82 RetrotransposonsLTRLTR-Caulimovirus917967379763+
scaffold_8_LTR-Caulimovirus_83 RetrotransposonsLTRLTR-Caulimovirus987975479851-
scaffold_8_LTR-Caulimovirus_84 RetrotransposonsLTRLTR-Caulimovirus35146368044637154-
scaffold_8_LTR-Caulimovirus_85 RetrotransposonsLTRLTR-Caulimovirus630646389614645266-
scaffold_8_LTR-Caulimovirus_86 RetrotransposonsLTRLTR-Caulimovirus40146452674645667-
scaffold_8_LTR-Caulimovirus_87 RetrotransposonsLTRLTR-Caulimovirus333246456644648995+
scaffold_8_LTR-Caulimovirus_88 RetrotransposonsLTRLTR-Caulimovirus90946490784649986-
scaffold_8_LTR-Caulimovirus_89 RetrotransposonsLTRLTR-Caulimovirus124046537064654945-
scaffold_8_LTR-Caulimovirus_90 RetrotransposonsLTRLTR-Caulimovirus85746550994655955-
scaffold_8_LTR-Caulimovirus_91 RetrotransposonsLTRLTR-Caulimovirus297046559464658915+
scaffold_8_LTR-Caulimovirus_92 RetrotransposonsLTRLTR-Caulimovirus394446678544671797+
scaffold_8_LTR-Caulimovirus_93 RetrotransposonsLTRLTR-Caulimovirus11181059853510599652+
scaffold_8_LTR-Caulimovirus_94 RetrotransposonsLTRLTR-Caulimovirus18211060079310602613+
scaffold_8_LTR-Caulimovirus_95 RetrotransposonsLTRLTR-Caulimovirus24011060261110605011+
scaffold_8_LTR-Caulimovirus_96 RetrotransposonsLTRLTR-Caulimovirus54721086619910871670-
scaffold_8_LTR-Caulimovirus_97 RetrotransposonsLTRLTR-Caulimovirus54031087166510877067+
scaffold_8_LTR-Caulimovirus_98 RetrotransposonsLTRLTR-Caulimovirus27121087705610879767+
scaffold_8_LTR-Caulimovirus_99 RetrotransposonsLTRLTR-Caulimovirus23941087975210882145+
scaffold_8_LTR-Caulimovirus_100 RetrotransposonsLTRLTR-Caulimovirus25231088217910884701+

< 3 4 5 6 7 > Total 7


Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1277

Start:

78403  

End:

79679

Strand:

+

>scaffold_8_LTR-Caulimovirus_81

ACAGTTCAAGACAAAAGAGACAGCTTCTCAACGTTCCTAAGGTGGTTTTCACCATTGACTGTCTGGAGTGGAAAACTACGAAGATCCGCAAATGCGACAAATCTAACATTCAAAAAGCTGAAGAGAGGTGGACTCAACCCATTCTTCAATCCACATTCAATCTACTTCTTTCATCGTCCCGTCAAGGTCAACCGCAAAACAAGCAAAATCCTCGCTCTCCCAACTCTTATTCATCACGGCGATTTTTCAAGAGGA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

91

Start:

79673  

End:

79763

Strand:

+

>scaffold_8_LTR-Caulimovirus_82

AAGACTACAAATTCAACAATTTCTTGGCGTAATCAATTATGTGGGAGACTTTATTCCACACCTTTCCAGAATGACGAGACCTCTACAGAAG

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

98

Start:

79754  

End:

79851

Strand:

-

>scaffold_8_LTR-Caulimovirus_83

TCTACAGAAGGATTTAGCTGAGGGCGTTTTGGAGGCTTAGAAAGAGACATGATTGAGAGTTTGTTTTCCAGAACATTCAAAACGATCAGTCATAAACA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

351

Start:

4636804  

End:

4637154

Strand:

-

>scaffold_8_LTR-Caulimovirus_84

TTAAAGCTAGCACGAGCGGAGGGTCGTGTTGACTAAGTCTAGACGACAGTCGTGTTTACAAGCAAGGGTTCATATTCCAGGTAAAGGGAGCGGTTCGGACCTCTTTGCCTACTGTGTTGCTCAACCTACTATTAGGAACTGTGAACCCCGGCGAGTACTATTGACTGCCGTGTTCGACCGTCGTATTGACGGACCACTTATGCTAACCTTAAGAGAACAATACAGAATCGCGACTGTGTTTAGAATAGAAAGAAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

6306

Start:

4638961  

End:

4645266

Strand:

-

>scaffold_8_LTR-Caulimovirus_85

TAGAGAGAGAACTCTCTAATTATATATATAGATTTCAAGTTCTGATTTCTTACAAGGGGTACACACTTATTTATAGGAGGTTTTAAGGCGCTGACATAAGCGCTTACCTCAGCGATACATCATCGCTTACATCATTGCTTACATAATCATTATATCAGCGATTACATCATCGCTTACATCATTATTTATTTTACATGATTTTAAACATATCATATTATATTTTATATTTAACATACCGCTTAATGATCCATTTCG

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

401

Start:

4645267  

End:

4645667

Strand:

-

>scaffold_8_LTR-Caulimovirus_86

CTGATCAGATCACGAACACCTTTTACTGAAAAAGCACTAGGCTTTTTAGCAAAGTATTCATAAGGATTAACCAACGGGAGAGTTGTTTCTGGCAATTGATCTCCGGGAACGTATTCGATTTCATACAAGGAATTTATTTTAGAAAGGAAATTATTTTTTTGGATTTTTGGTAAAGTAGATATAGCAAATTGAGAATCTATAGAAGGATTTAGCTGAGGGTGTTTAGGAGGCTTAGAAAGAGACATGATTGAGAGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3332

Start:

4645664  

End:

4648995

Strand:

+

>scaffold_8_LTR-Caulimovirus_87

ACAATATTGTGCATACACCAAAAATTGTTCCGAACAATATCAACTCCGCTGGACCAGACGAATTAAGCCAAGCAGAAAAGGTTCTCAACTGGCAAACAGAAAATGCCTTTGTTCAGAATCAATTACTGACATCCATTAGCCACAAGGTTGATCAAATGTCAGATAACAACAATAGAAGATTCAACAGTCTGCAAGGAGCCATATCAGAGATTCAACAGAAACTCAGCAACTTGCACCAAGAAATGATGGCTATGG

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

909

Start:

4649078  

End:

4649986

Strand:

-

>scaffold_8_LTR-Caulimovirus_88

TAATCTTAAAGCTAGCACGAGCGGAGGGTCGTGTTGACTAAGTCTAGACGACAGTCGTGTTTACAAGCAAGGGTTCATATTCCAGGTAAAGGGAGCGGTTCAGGCCTCTTTGCCTACTGTGTTGCTCAACCTACTATTAGGAACTGTGAACCCCGGCGAGTACTATTGACTGCCGTGTTCGACCGTCGTATTGACGGACCACTTATGCTAACCTTAAGAGAACAATACAGAATCGCGACTGTGTTTAGAATAGAA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1240

Start:

4653706  

End:

4654945

Strand:

-

>scaffold_8_LTR-Caulimovirus_89

TATGAACGGAATGGGGAACGTTTGTCTTGCATTGTTGAGGTGAAACGCATGAGTTTGAAAGTTCTCATATGCTTCATTGTCTTGAAGGTTGAAATCTGGACGAACTCCTCTTGAAAAATCACCGTGATGAATGAGAGTTGGAAGAGCGAGGATTTTGCTTGTTTTGCGGTTGACCTTAACGGGACGATGAAAGAAGTAGATTGAATGCGGATTGAAAAACGGGTTGAGTCCACCTTTTTTCAGCTTCTTGAATGT

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

857

Start:

4655099  

End:

4655955

Strand:

-

>scaffold_8_LTR-Caulimovirus_90

TCTTTTTTCTTGCAAAGCTTGTCAAGAGTTCTGAACACCTGCTGCTGTATTTGTCCAATCGAGATTTCTTCGATTGTCTGCCCTTGATCTCTGATATACAGCTTTGTTTGTTGACTTAGGTAGTCGTCGATGGATGAAAGATAAACTTGCTTCAGGCTTGGATTGTTTAGACCATTGAGAGCATAATACCTTCGAGTTTGTCGCTCGAAATGCTTTGCTAAATCTCTCTTCTTCAATGAACAACACTTCGCTGTG

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2970

Start:

4655946  

End:

4658915

Strand:

+

>scaffold_8_LTR-Caulimovirus_91

CGATCATCGCCTATTCTCAATCGAAGACTCAGTATCTGCAGAATTCAACAAAATTGAAGAAGAACTAAAGATGGCATCATGTGCAGATTCACACACGGAGTTCCTTCAAAAGTGTAATCATCCGTTATGGTTAAACTCAAGCTTCTTCGTATCCCTACCATTCAAAGAAGATGTACACACAACACCAACAAAAGCAAGCCATGCAGGAATGCCTCCAACATTGTTGCAGAAGGCAAATGAGGAATGCAATCAATT

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3944

Start:

4667854  

End:

4671797

Strand:

+

>scaffold_8_LTR-Caulimovirus_92

CAGAATTCATGGACAAGTCAAAGCATCTTTCGAAGATATGTGCTCGCCCGGATCTAAACATCAAATGTTCGAAAAAGAAAAAATGTTCATGTGAAGATCGACGAAAAGACCGAAGAAGATCCAAGAAATCATTCTTGAAGTCGAAATATTTCAACAAGATTAAACGCAAGCGATTCTTTAGAAAGAAGAAAAGCTTCGAGAAAACTTCAAGATGTTTTCTATGCAGAAAGACGGGGCATTTTGCAAAAGACTGTC

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1118

Start:

10598535  

End:

10599652

Strand:

+

>scaffold_8_LTR-Caulimovirus_93

ATCTCCCAAGGCTATGGCAGCAGCAGGGCTACACTCATCTACACTTTGGTGTAGTACGAATCGGTTTAACCTTACACGCACGAAAAGGTTTACCAGTTGTAGCACGGATTGCTTTGCTTGACTCAAGGCTCAAATCCTATCAACAAGCTTGCATCGGAACAGTACAAACAACGCTGAACGCAGGAACAATATTTATAACACTGTTTCCAAATTTCAATGTCTCACTACAAGATCCAAATCTCCTGAAGGCGCTTA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1821

Start:

10600793  

End:

10602613

Strand:

+

>scaffold_8_LTR-Caulimovirus_94

GAAGCAATCACTTCCCCTACAGAAGTGGTGATACGACGATTCACATCGAGATGTCAGGCGCATTAAAAGAATGGTGGAATTCGCTTGGAGAATATCGGCAGCAGCAGGTGTATCAGACAACGATACCTCTACTTCTTGGAGAAATACATAGAGAATTCGTTGGCACCCCAAATCATTTAAAAGAACAACTACAAGAAGAATTCTACACAGCGAAGTGTTGTTCATTGAAGAAGAGAGATTTAGCAAAGCATTTCG

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2401

Start:

10602611  

End:

10605011

Strand:

+

>scaffold_8_LTR-Caulimovirus_95

AACATATTCAGGCGCTACAACAGTTTCAAGACATCGTCAAGAAAACCGGAATCATGCTATCAGCTAGAAAGATGATAATAGCCCAACCCAACATTGATTTTCTTGGCATGCATATCAAAGAAGGAAGTTTCATACCACAGGCCCATTTAGCTACAGAACTTCTAGATTTTCCCGATGAAAATCTTACAAGGCGACAAATTCAACAATTTCTTGGAGTAATCAATTATGTGGGAGACTTCATTCCACACCTTTCCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

5472

Start:

10866199  

End:

10871670

Strand:

-

>scaffold_8_LTR-Caulimovirus_96

TGATACCATTATCTTAAAGCTAGCACGAGCGGAGGGTCGTGTTGACTAAGTCTAGACGACGAGTCGTATTTACAAGCAAGGGTTCATATTCCAGGTAAAGGGAGCGGTTCGGGCCTCATTGTCATCTGTGTTGCTCAACCTACTATTAGGAACTGTGAACCCCGGCGAGTACTATTGACTGCCGTGTTCGACCGTCGTATTGACGGACCACTTATGCTAACCTTAAGAGAACAATACAGAATCGCGACTGTGTTT

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

5403

Start:

10871665  

End:

10877067

Strand:

+

>scaffold_8_LTR-Caulimovirus_97

GTGTATAATCCTTTTGACTATATGTCATCTGGATTACCCACATATCAAGAATCATATTCTCCAGGATTTCTGTTTGGATATCAAGATCCAAAACCAAAACAGCATGTACCTGGATTCTTATCCTCTGATGAAGCCTTTACATCTCGATTTGGTACAACTTCGCCCAGCAATTTCAAAGCACAGGTGGCAAGAGCTAAACCAAGACGTCAAAAGGATTCTGAGTTTCACATCAATCCATCCAAGAAGCCAAGCTTC

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2712

Start:

10877056  

End:

10879767

Strand:

+

>scaffold_8_LTR-Caulimovirus_98

ATCCTTATGAATCAGATGATGAAAAGCGAAGAAGACGGAGAAAAAAGAAGGATCCACTTTATAAACGCTACCTTGAAGGAGATCCCACAGTAGGTCCACTTGGTGACGACAACTACGACTTCATAGTCGAGTATTCAACAAAGAAGGATGACTCAAACCAGCACCTCATGATGATAAAGATGGATTTTCCTCCGCCAAAAGACTTTGTCAAGGACGATATTGTGCATACACCAAAAATTGTTCCAAACAACATCA

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2394

Start:

10879752  

End:

10882145

Strand:

+

>scaffold_8_LTR-Caulimovirus_99

AAGAATGAAGAAGAGCATATTCAGGCGCTACAACAGTTTCAAGACATCGTCAAGAAAAACGGAATCATGCTATCAGCCAGAAAGATGATAATAGCCCAGCCCAATATTGATTTTCTTGGCATGCATATCAAAGAAGGAAGTTTCATACCACAGGCCCATTTAGCTACAGAACTTCTAGATTTTCCCGATGAAAATCTTACAAGGCGACAAATTCAACAATTTCTTGGAGTAATCAATTATGTGGGAGACTTCATT

Arabidopsis lyrata (v2.1)

ID:

scaffold_8_LTR-Caulimovirus_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2523

Start:

10882179  

End:

10884701

Strand:

+

>scaffold_8_LTR-Caulimovirus_100

ACATTCGATGACATTCCTTTTGAAAAATGGAATAGTCGTCTCGACGAGTTTCATGCGTGGATGACGTCCGAAGCAATCACTTCCCCAACAGGAATGGTGATACAACAATTCACATCGAGACTTTCAGGCGCATTAAAAGAATGGTGGAATTCGCTTGGAGAATATCGGCAGCAGCAGGTGTATCAGACAACGATACCCCTACTCCTTGGAGAAATACATAGAGAATTCGTTGGCACCCCAAGTCATTTAAAGGAA