ID Class Order Superfamily Length Start End Strand View
Scaffold15774_LTR-Caulimovirus_81 RetrotransposonsLTRLTR-Caulimovirus192614058614249+
Scaffold15774_LTR-Caulimovirus_82 RetrotransposonsLTRLTR-Caulimovirus954970489971442+
Scaffold15774_LTR-Caulimovirus_83 RetrotransposonsLTRLTR-Caulimovirus3798971602975399+
Scaffold15774_LTR-Caulimovirus_84 RetrotransposonsLTRLTR-Caulimovirus757975624976380+
Scaffold15774_LTR-Caulimovirus_85 RetrotransposonsLTRLTR-Caulimovirus938976408977345+
Scaffold15774_LTR-Caulimovirus_86 RetrotransposonsLTRLTR-Caulimovirus205978142978346-
Scaffold15774_LTR-Caulimovirus_87 RetrotransposonsLTRLTR-Caulimovirus3376978794982169-
Scaffold15774_LTR-Caulimovirus_88 RetrotransposonsLTRLTR-Caulimovirus19411295861129779-
Scaffold15774_LTR-Caulimovirus_89 RetrotransposonsLTRLTR-Caulimovirus382911301911134019-
Scaffold15774_LTR-Caulimovirus_90 RetrotransposonsLTRLTR-Caulimovirus162911343711135999-
Scaffold15774_LTR-Caulimovirus_91 RetrotransposonsLTRLTR-Caulimovirus29611360161136311-
Scaffold15774_LTR-Caulimovirus_92 RetrotransposonsLTRLTR-Caulimovirus139023517892353178-
Scaffold15774_LTR-Caulimovirus_93 RetrotransposonsLTRLTR-Caulimovirus111331201113121223+
Scaffold15774_LTR-Caulimovirus_94 RetrotransposonsLTRLTR-Caulimovirus116831213753122542+
Scaffold15860_LTR-Caulimovirus_95 RetrotransposonsLTRLTR-Caulimovirus1777187272048-
Scaffold15860_LTR-Caulimovirus_96 RetrotransposonsLTRLTR-Caulimovirus8457409774941+
Scaffold16335_LTR-Caulimovirus_97 RetrotransposonsLTRLTR-Caulimovirus33441945322796-
Scaffold16335_LTR-Caulimovirus_98 RetrotransposonsLTRLTR-Caulimovirus2632281623078-
Scaffold16335_LTR-Caulimovirus_99 RetrotransposonsLTRLTR-Caulimovirus2402565925898-
Scaffold1774_LTR-Caulimovirus_100 RetrotransposonsLTRLTR-Caulimovirus1846619466377-

< 5 6 7 8 9 > Total 22


Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

192

Start:

614058  

End:

614249

Strand:

+

>Scaffold15774_LTR-Caulimovirus_81

atgaagtaaagtaTGTGTGATGGATGAGGTAAGTGCTTACGCAAGCAACTTAATCCTCTCCTAAGTGTGTACCCCCTATTTAAGATATAACTTTCATTTTATAAAATATTTTCTTTCTCTAAACTCTTATGTCTCTATAAATTCTCTCTAAGTTTTCTAGATCTCAACATGTTCATAAGCTTTTTTTTCTTC

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

954

Start:

970489  

End:

971442

Strand:

+

>Scaffold15774_LTR-Caulimovirus_82

TATGAATCTGACTATGAAAAAAGAAGACGAATGACAGCGAAGAAAGATCCCTTTTACAAACGATATCTAGAAGGAGATCTAACAGTAGGTCTACTTGGAGAAGATAATTCCCGAtatgaatttaTTGTGGAATACTCATCTTAGAAGAAAAAGCAAGAACTCCCTGAAGTCATGATGTTCAATCCAGACAATTTCCCACCATCCGAAGATTTCACTAAGGGTGATATTGCtcatagtccaaAGATAGTTCCAAATACTATCAACTCCTTTGACCCTATTCAAATTACTCAAGCagaaaaagttcTCAACTGGCAAACGGAGAATGCTGTCGCTCAGAATCAACTCCTTCATACGATCAATCAAAAAATAGATCAAACGGCGAACTACTACAACAAAAGATTCAACGTCTTACAGAGCTCCATAACAGAAATTCATGAACGTTTGGACTAGCTGCATCTAGAAATGACGACTATGGCAAAAAACATGCTAGTCAACACTTCAAGTTTTCGAAgcaaagaagctGAGATGTCAAGCCTCAAAAATCAATTAAAAAATCTTCAAAAATGCCTTAAAAGTATGAAGCAGAACAGAAGATCGACAGATGGATTCTTCCCTCCATTCGGGAATATagatacagaacCTTCGTATCAAACATCTTACTCTCTAGGATTCCTTTCACAAGGCAGTACAAGACCAGTCACACCTTCAGCAGGTTTCctgtcatctgaTGAAGTGTTCACATCCCGTTATGCTATGCCATCTTTACCAACTTTCAAGCTAACATATCGGGAGAAAACAAGGAGATACAAAGAAAAAGAAACGCCAGCCCAACcatttataaaaccaattctctcttcctcaccgTCAAGCCACGACTCTTTTGAAGAACAAAAAAGAGGAGAAGACAAAGGAAAAGGCAAGACTGAAGAAATTGGTATCATTGAGTTCTCaatg

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3798

Start:

971602  

End:

975399

Strand:

+

>Scaffold15774_LTR-Caulimovirus_83

GATGAATCCCTTCCAAGACAATTCGCCATAGGTGAAGGAAGCCACactcctaaagaggaacctgacatagatgaagtatattcagatgaagaaatgcgcgattatcgccagttccatggagaaaaTGGGCAACCAAGACAATTTGCCTCAAAAGTCATCACATTCACATTTGATGTCATTCCGTTTAAAAAATGGAATGATTATCTTAATGAATTCTATGTATGGATGACTTCTGAAGCCCTTacttcaccaaCACATATCGTCATTCAACAATTCACTGCTCGTCTTTCTAGAGCATTAAAGGAATGGTGGAACTCTCTTGGAGATTACagacaaatgcaAATCCATCAAACTACCATTCTACTACTGTTAGGAGAAATTCATAGAGAATTCATCGgcactcctaatCATATCAAAGATCAGTTACAAGAAGAATATTTTGTGGCAAAATATTATTCTCTCCGGAAGAAAGATCTGGCAAAACACTTAGAAAGACAGACAAAAAGATAATATGCCCTTGATGGTCTTAACAATCCAAGTTTGAAGCACGTCTATCTttcatccattCCCAACTATCTCAGCCAACAAACAAAACTCTATATCAGAGATCAAAACCAGACGATTGAAGAAATCTCCATTGGCTAAATCCAACAATACGTCTTTAGATCACTTGACAAACTCTGTAAACAAAAAGAGTTTTGGACGGAAttcatggacaaCTCAAAGCATCTAACGAAGATATGTTCCAAATCCAACTTATTCATCAAGTGTTCCAAAAAAAAATCGTGTTCGTGTAGCGACCGCAAGAACTTTCATAAGATTAAGAAGTTCTCAAAAAAGCCTCTATTCAGACGCAAAAGATTCTTTAGACGGAAAAAAGTTTCAAAAAAACAACAAAATATTTTCTCTGTCGCAGAGAAAGACACTTTGCAAAAAATTGTCCGAACAAATCCAAGAAGAAGATGCAGTATCTCGTCAACTCCATATCCAGCATAGCGCCAGAACTTGATCTCGATCACTATGATCTTGAGTCAATTTTATCTTATGACAGCGATAAAAATGATGTGATATGCGGATATTCAGACATAGAAGAAGAAGAAATATCATTTGAAGAAGAAAAATGCTACAAGATTACAAAATTACCTAGACAAGAAGAATAACACACAACACCACATCTTTCTGTCACGGTTTTTGATCCAGACAAGAAAATACGACCAGTCCAcataattgcaTTCATCGACACAGGAGCCCACACATCAATTATGAATCCAAAGGTGCTTCCACCAGCAATGTGGttaccgtatcaACAAGAATTCAGAGTAGCAAATGCAGGCTCTTTCAAAGTTAAACTCAAGTCTAAGCCAATAATCATTGAAGTCTTTCCAGGAtgtcaaattacaACACAAGTTCTTGGATCAACTGAACCAGGGAAAGATATCATATTAGGATGAGATTGCTACTACAAACTCAAGAAAGATTATGACATCTCTATTGAACCAcgaggtgtaaaATGGAACAATTCCTTCAAACCATTTACAAATATACCAAGAATCTTCTCAGTTGAAGACCTCATGATgtctgagttcaACAACATCAAAGAAGAAATCGAAAACGTCTCATGTGCGGATTCACACAGCAACTTCCTACAAAAATGCAAAGAACCTTTGTGGCTCAATTCAGAATTCTTTGTATCACTTCCTTTcaaagagaatgTGATCACTACGCCAACTAAGGCAAGTCATGCAGGAATGCCTCTAACATTACTTCAACAAGAAAATGAAGAATGCGACCAACTTATTAACCAAGGAATAATCTCAACAACAAATTCATTATGGGCGTGTAAGGCCTTTTATGTCAATAAAAGAGCAGAACAAGCAAGAGGAAAACTAAGACTTGTAATTGATTACAAGCCACTGAATAAAATTTTTCAAGACGTCAAGTTTCCACTTCCGGCAAGAAAGGCGTTGTTACAACACCTCTCCGGGGCAACTATTTTCTCTAAAATCGATTTAAAATCTGGATTTTGGCAACTTGGAATCAAACCAGAAGAAAGACACAAGACGGTGTtctgtcttccCAACCGACATCTAGAATGGAAAGTCCTACCTTTTGGATTAAAGACAGCTCTGTCCCTGTTCCAGTAAGTGATGCTAAAAATATTCAAGCCATGGTTCACACAGCCATAATCTACATCGATGATATCCTCTTATTttccaaaaccgAAGAAGACCATGTCAAGACTCTAAAACAGTTTCGTGATCTGGTTCGAAAACATGGAATCATGCTCACGGCAAAAAAGATGACCGTAACTCAACCAACGATTGATTTCCTTGGAGTCAAGATTACAGAAGGATAATTTACACCACAAGCCCATTTAGATACATAACTACTCTCCTTCCCCGATGAGAATCTGACAAAACGACAAGTGCAATAATTTCTTGATGTAATCAATTGTATCGGCGACTTTATTCCAAAGCTGTCACAGCTgactcagccatTGAGAAAGCTGTTGCAAAATAATCCCCCACAATGGAGTAAATGACAAACTGACACGGTCAAAAAAGCTAAAAGAAGAAATTCAAAAGCTACCACCTCTAAACATTCTCTCTACTGGAAAAAGAATCCTACAAACCGACGTAAGTGACAAATATTGGGGAGCAATATTATTTGAAGACATCGACAAGACAAGACAAATTTGTGCCTACAAAAATGGACGTTTTAAGGAGTCAGAAATGCACTATCACTCAACGTTCAAAGAGATTTTAGCTGTTAAAAGAGCTATTGAAAGATTCGAGTTCTACCTGATAGGacataaattcaAAATTGAAATGGATATGTCATCTTTTCCAAAGATGCTCTAATTCAGTCAGAAGATGGTTCCTCATCAGTAGTTACTACGATGGAGTGAGTGGTTCTCAAAGTATGATTTCGACTCTGCCtatttaaagggcacgaagaacatcctagcagacatgctcagtcgtaaaccactaaacactatctatacaatgacGAGCAAACCAAGTTCCAGCTCTTCATCAATAAGAGATCTCTACGACTTCATCGACAACATACTTGAAGATGCAAAAGATCTTATCAAATccgaacaattcCACAACCGCGTCAATCAAAAGATTTTTAGATACTAGTCCATCATCGTCGCCAATCATGACAGTGAAAATCGGTACATATCACCACTTGGTATCCATCCTGACAACCCATTTGCTCACCTCTACAGAATCCAGAATgtcaacctaccCGAAGAAGTTCTATGTTTCCTCTGGTACCTTTATGCAGTATACACTATTGGAATTATCTTTGATATTCCatggatgtacCAATACATCCACAGCCCGAGTTATGCAGCCAACAACCTTTCAACCTTCCTAGGATGGTTCGCTACAATGAATGTCTGGAGTACCAAGCTCCGTAACTCAGCAAAAACGCTCAACTACCCTTTCAAGAAGTTAAGAAGCTCAaccagctacaatCCATTCTTCAATCCACATACCATCTACTTCTTCAAGCGACCTATCAACATTAATCCAAAATCTGGAAAGGTCTACGCGATACTTACTTTAATCTATCACAAGAATTTCAACAAAAGAATACGTCCAGATTTCAATATGGCAGACAATGAAGCCttcgaagccttTCAGACTCATGCATTTAACCTCAACAACGTAACACAGAAGTTTGATATTCCCTACAAACCAAACTGGTTAttttatgaaatTGACTATCAGATGACGCTTGATGAAAACCTCTAATGGTTCATGTTAAAGCAAGAACAAGAAG

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

757

Start:

975624  

End:

976380

Strand:

+

>Scaffold15774_LTR-Caulimovirus_84

ATGAAGTAAAGTATGTGTGATGGATGGGGTGAGTGCTTATGCAAGCAACTTAATCATCTCCTATAAATAAGTGTGTATCCCCCCTGTGTAAGACACAACTTTCATTCTATAAATATTTTCTCTCTCTAAACTCTCATGTCTATCTAAATTCTCTCTAAGTTTTCTAGATCTCAATATCTTCATAAGCTTTGTTTCTTCCTCTCATCACaaattagggaTCCGATGTTTCTTAGGTCTAGGTAAGCAAAGTAAAGTCTCCAATTTATGAAAGTATTCTAGAGTCTCCGGTCTAAACAACACGACGGCCAATACGGGCTTTCGTGGAGGGTAATCTCTAAGAGTGGcttgagtcatGGCTGGATAAGTGTTAGCGCCTACGTATACTCGCCTTACTTGAGATGAACCGCCATGTCTGTCCAACACGACTTTGTCAATACGTTTAGATATGTGAAACTCTCATACATGACTTAAATCTGTGTGACCCTCTTGCCTATCTTTTATCAATTTGGTATCAAAGCCCAACACTTGTGTATGTTTGGGATAATTATTGTTTATGTTGATTGTTCGAGTTTCTGGAAAACTTAATTCTCATTATCATGTCTGATCTTCAAGTTATTCATTCCCCTTTTCAAATTTCTACCTTACCCCAAAATAAAAACAAGCATTTTCGTCTAAAATAGATTCCCTTTATGAGGTTGAATATGTTCCGggagatcgtcaCCCCGAAACTACTCTTCCTCTTATAAATCCTTATGAA

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

938

Start:

976408  

End:

977345

Strand:

+

>Scaffold15774_LTR-Caulimovirus_85

CCATCTTCCaccagaaaagTCAAGGAATATGTTCAAGCCAGCAAATTCTCTTCCTCCCAAGTTTCAGCGACCGAAGAAGAGCAGTTCAtatcacttgaaATCCCACCGCATCTTCCACGGCTCGGGCAATACCAAGGGTTCACACACCTACACTTTGGTGTTGTGTGGATCGGTCTCACCTTACATGCTCGAAAAGGATTACTGGTCACAACACGAATTGCTTTAATCGACTCTAGACTAAAAACATATCAACAAGCATGTATTGGCACCGTTCAAACTACCCTAAACACAGGAACTGTTTTTGTAACACTATTCCCTAACTTTAATATCTCTTTGAAAGATCCTAATCTTTTAAAAGTACTTAAAGTTCAGTTACAAATTGTTGGCGCACCTATGCAAGAAATAAGTATGATAGCTACGCTTCATCATCAAATTGTTTATCGGGTCCAAGATCatgcccttgatctagtcctcccttcatcagaagaagcactgtttcttgaagtcacatcagCTTCTCAAGCTCCAAATGCCATCCAAATTCCTCGCCAAATATCACGAGAAAAACTAATATAGAAGCTGCCGGAATCATGGGTGACCAgttatgaaaagCTCCATCAAGCACCACAAGGACCTATCTAAACGACTGAAGCAATATTCCAGTCAAGAAATGATGTTCACGCAGTTTTCTATCCAAATCGATGAACGAGAACTGCAAGGGCATTACAAAGAGCAATATCCAAAACCAAGCTCTTTtgagaaagatgGATCATTCGTATATCCATTCAAAGATGAAAATGGATATTGTTTCTTCGACGTCTGTAATTGTACAGTTTGTGAAGAAGTTGCTTATGAATCTGACGATGAAAAAAGAAGACGAATGAGAGCGAAGAAATATCCCCTTTACAAACGACTACAAACGTCCACTTGGAGAAGAT

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

205

Start:

978142  

End:

978346

Strand:

-

>Scaffold15774_LTR-Caulimovirus_86

AGGAAGaaacaaaacttatgaagaTGTTGAGATCTAGAAAACTTAGAGAGAATTTAGAGAGACATGAGAGTTTAAAGAGAGAAAATATTTATAGATGAAAGTTGTGTCTTACATAGGGGGTACACACTTATTTATAAGAGAGGATTAAGTTGCTTGCGTAAGCACTCAACTCATCCATCACACATACACACCTTATACATTACTT

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3376

Start:

978794  

End:

982169

Strand:

-

>Scaffold15774_LTR-Caulimovirus_87

ATTGGAGGTCTTCATCAAGCGTCATCTGTTAGTTAATTTCATAAAATAACTAGTTTGGTTTGTAGCGAATAACGAACTTATGTGTTGCGTTGTTAAGGTTAAATGCATGAGTCTGAAAGGCTTCGAAGGCTTCATTGTCCGCCATATTGAAATCTGGATGTATTCCTTTGTTGAAATCCTTGTGATGGATTAAAGTAGGCATCGCGTAGacctttccagattttggattgatgttgataggtcgcttgaagaagtagatggtatgtggattgaagaatggattgtagctggtTGAGCTTCTTAACTTCTTGAAAGGGTAGTTGAGCGTTTTTGCTGAGTTACTGAGCTTGGTACTCCAGACATTCATTGTAGCGAACCATCCTAGAAAGGTTGAAAGGCCATTGGCTGCATAACTCGGGCTGTGGATGtattggtacatCCATGGAATATCAAAGATAATTCCAATTGTGTATACTGCATAAAGGTACCAGAGGAAACATAGAATTTCTTCGGGTAGGTTGACATTCTGGATTCTATAGAGGTGAGCAAATGGGTAGTCAGGATGGATACCAAGTAGTGATATGTACCGATTTTCACTGCCATGATTGGAGACGATGATGGACTTGTATCTGAAAATCTTTTGATTGATGCTGTTGTGGAATTGTTCGGATTTGATAAGATCTTTTGCATCTTCGGGTATGTTGTCGGTGAAGTCGtagagatctctTATTGATGAAGAGCTGGAACTCAATTTGCTCGTCATTGTATAGATAGTGTTTAGTGGTTTACGACTGAGCATGTctgctaggatgttattcgtgccctttaaataggcagagtcGAAATCATACTTTGAGAACCACTCACTCCATCGTAGTAACTGCTGATGAGAGACCATCTTCTGACTGAATTGGAGCATCTTTGGAAAATATGACATATCCATTTCAATTTTGAATGTCTTATCAGGTAGAACTCGAATATTTCAATAGCTCTTTTGACAGCTAATATCTCTTTGAACGTTGAGTGATAGTGCATTTCTGACTCCTTAAAGCGTCCGTTTTTGTAGGCACAAATTTGTCTTGTCCCGTCAATCTCTTCAAATAATATTGCTCCCCAATATTTGTCACTTGCgtcggtttgtaGGATTCTTTTTCCAGTAGAGGGAATCTTTAGGGGTGGCAGCTTTTGAATTTTTTCTTTAAGCTTTTTGACCGCGTCAGTTTGTCGTTTACTCCACTGTGGGGGATTATTTTGCAACAGTTTCTCAATGGCTGAGTCAGCTGTGACAGCTTTGGAATAAATTCGCCGACATAATTGATTACACCGAGAAATTGTTGCACTTGTCGTCTTATCAGATTCTCATCGGGGAAGGAGAGTAGTTCTGTAGCTAAATGGGCTTGTGGTGTGAATTGTCTTTCTGTAATCTTGACTCGAGCATGATTCCATGTTTTCGAACCAGATCATGAAACTGTTTTAGAGTCttgacatggtcttcttcggttttggaaaataagaggatatcatcgatgtagattagggctgtgtgaaccaatgacttgaatatttttagcatcgcttactggaaCAGGGACGGAGCTGTCTTTAATCCAAAGGGTAGGACTTTCCATTCTAGATATCGGTTGGGAAAACAGAACGCCGTCTTGTGTATTTCTTCTGGTTTGACTCCAAgttgccaaaatCTTGATTTTAAGTCAAATTTTGAGAAAATCGTTGCCCAGAAAGGTGTTGTAACAATGCCTTTCTTGTCGGAAGTGGAAACTTTATGTCTTGAAGAAATTTATTCAGTGGCTTGTAATCAATTACAAGTCTTagttttcttcGTGCTTGTTCTGCTCTTTTATTGACATTAAAGGCCTTACAAGCACATGGTGAATTTGTTGTTGAGACTATTCCTTGGTTAATGAGTTGGTCACATTCTTTATTTGCTTGCTGAAGTAATGCCGGAGGCATTCCTGCatggcttgccTTAGTTGGCGTAGTGATCACATTCTCCTTGAAAGGAAGTGATACAAAGAATTATGGATTGTGCCACAAAGGTTCTTTGCATTTTTGTAGGAAGTCGCTATGTAAATGTACACATGAGACTTTTTCGATTTCTTCTTTGATGTTGTTGAACTCAGACATCatgaggtcttcaactgagaagagtcttggtatagttgtgaatggtttgaaggaattgttccattttACACCTCGTGGTTCAATAGAGATGTCATAATCCTTCTTGAGTTTGTAGTAACAATCTCATCCTAATATGATATCTTTCTCTGGTTCAGTTGATCCAAGAACTTGTGTTGTAATTTGACATCCTAGAAAGACTTCAATGATTATTGGCTTAGACTTGAGTTTAACTTTGAGGGAGcctgcatttgctactctgaattcttgctgatacggtaaccacattactggtggaagcacctttggattcaTGATTGATGTGTGGGCTCCTGTGTCGATGAATGCAATTATGTGGACTGGTTGTATTTTTTTTCTGGATCGAAAACCGTGACAGGAAGATGTGGTGTTGTGTGTTATTTTTCTTGTCTAGGTAATTTTGTAATCTTGTAGCATCCTTCTTCTTCAGATGATATGTCTGAATATCCACATATCGCATCATTTTCATCGATGTCATAAGATAAAATTGACTCAAGATCATggtgatcgagATCAAGTTCTGGCGCTATGCTAGATATGGAGTTGATGAGATACTGCCTCTTCTTCTTGGATTTGTTTGGACAATTTTTTGCGACAGAGAAAACATTTTGTTGCTTTCTTGAAACTTCTTTTCCGTCTAAAGAAtcttttgcgtcTGAATGGAGGCTTTCTTGAGAACTTCTTGGTCTTATGAAAGTTCTTGCGGTCGCTACACGAACACAATTTCTTTTTGGACACTTGATGGATAAGTTGGATTTGGAACATATCTTCGTTAGATGCTTTGAGTtgtccatgaatTCCGTCCAAAACTCTTTTTGTTTACAGAGTTTGTCAAGTGTTTTGAAGACGTATTGTTGGATTTGGCTAATGGAGATTTCTTCAATCGTCTGGTTTTGATCTCTGATATAGAGCTTCGtttgttggctgaGATAGTTGGGAATGGATGAAAGATAGACGTGCTTCAAACTTGGGTTGTTAGGACCATCAAGGGCATAATATTTTTTTGTCTGTCTTTCAAAGTGTTTTGCAagatctttcttCTGGAGAGAACAACATTTTGCCGCAAAATATTTTTCTTGTAACTGATCTTTGATATGattaggagtgcCGATGAATTCTCTATGAATTTCTCTTAACAGTAGCGGAATGGTAGTTTGATGGATTtgcatttgtctGTAATCTCCAAGAGAGTTCC

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

194

Start:

1129586  

End:

1129779

Strand:

-

>Scaffold15774_LTR-Caulimovirus_88

ATCGCTAACTTGTGTTTGAAAGAAAGAAACaaaacttatgaagatgTTGAGATCTAGAAAACTTAGAGAGAATTTAGAGACTCATTTTAGAGAGAGGATATTATTTCCGAAAAATGAAACTTATCCTTCCCATGAAGGGGTACACACATATTTATAGGAGAGGTTTAAGCATACTTAAGTAAGCGCTTACCTCA

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3829

Start:

1130191  

End:

1134019

Strand:

-

>Scaffold15774_LTR-Caulimovirus_89

TCTTCTTTGataatcttctTTTGGGTATTCTGCTTTTGCTTCTTTCTCTTCTTCTTTTGATATGAAGAAATGGAGGTCTTCATCGAGAGTCATCTGGTAGTCAAGCtcataaaatgACCAATTCATTTTATAAGGAATGGCAAACTTTTGGTATGTGTTGAGGCGGAAAGCATGTAGCTAGAACGACTCAAAAACTTCATTGTCGGCCATGTTGAAATCTGGACGGAATCCTTTGTTGAAATCTTTGTGGTGGATCAATGTTGGCATTGCACAAACCTTTTGTGATCTTGGATTGGGATTGATAGGCCTGTGAAAGAAGTAGATGGAGTGCGGATTGAAGAACGGATTATAAGTATTGGAATTCTTCAGCTTCTTGAaggggtaattgAGTGCTTTTGCTGAGCTGCGAAATTTGGTGTTTCAATCATTCATTGTAGCGAACCATCCTAAGAAGGTGGAAAGACCGTTGGCTGCATATATGCGGTAGTGGATATATTGGTATAACCATGGAATATCAAAGATAATTCTAATAATATATACTGCACAAAGGTACCAGAGGAAACAAATAACTTCTTCTGGGAGGTTGACATTCCGGATTCTGTAAAGATGAGCGAATGGATAGTGAGGATGAATTCCAAGTGGTGTAATGAAGTGGTTGTCAGCTCCGTGGCTGCTCAAGATTATAGACTGGTATCGAAACATCCTTTGCTTGAGGTATAGAATGTTCCGTCTTTGATGATGTCTTTTGTATCTTCAGGTATGTTGCTGCTAAAATCGTAAAGGCTTCTTTTTGCGGAGGAGTTAGGACCTGGGACAGTTGTCATTGTATAGAATGTCTTTAATGGGTTGCGGCTGAGCATGTCTGCTAAGATATTCTTCATGCCCTTTAAAAAGGCGGATTCAAAATCGTAATTCGAAAACCTTTTACTCCAACGTAGCAATTGCTGATGTGGAATTATCTTCTGACTGAACTGTAGCATTTTTGGAAAAGATGACATGTCCATCTcgattctgaatttgtgtccaatcaggtaaaactcgaattttttaatagctcttttgacggctaggatttctTTGAATGTGGAGTGGTAGTGCATTTCTGACTCTTTGAAACGACCACTTCTGTAGCCACAAATTTGTCTATTTTCATCAATCTCTTCGAACAGCATTGCTCCCCAATACTTATCACTGGCATCggtctgaattaTTCGTTTTCCTGTAGAAGGAATCTTTAGGAGTGGTAGCTTATGTATTTCTAGCTTTAGCTTTTTGACTGCTTCAGTCCGTCGTGTAGTCCACTATGGAGGATTCTTTTGGAGCATCTTTCGCAAAGGCTGTGTCAGTTGGGACAGCTTTGGAATAAAGTCACAAACGTAATTGATTACGCCTAAGAATTGTTGTACTTGCCTTCTCATCAGGTTTTCATCAAGGAAAGAGAGTAATTACGTGGCAAGGTGAGCTTGAGGTACAAatcttccttcaTTGATCTTGACACCAAGGAACTCGATATCTTGTTGTGCTATAATCATCTTTTTGCTGAGAGCATGATTCCATAATTTTTTactatatcatgAAATTGCTTCAGAGTTCGGATATGCTCATCTTTACTTGTAGAGAACAGGAAGATGTCATTAATATAGATCAACGTTGTGTGGACCAATGGCTTGAATATTTTTAACATTGTTTGTTGGAACAAGGACGAAGCTGTTTTTAGACCAAAGGGTAgaactttccatTCAAGATGGCGATTAGGTAGACAAAACGCCGTTTTGTAACTTTCTTCTGGCTGGATCCCAAGTTGCCAATACCCTGATTTTAAATTAAACTTTGAGAAAATGGTTGCTCTTGATAGGTGTTGTAGCAATGCTTTTTTTGTTGGCAGTGGGAACTTGATATCTTGGAGGAATTGATTTAGAGGCTTAAAGTCGATGACTAGCCGTAATTTTCCTCGTGTTTGTTCTGCTCTCTTGTTGACATAGAAAGCTTTGCAAGCCCATGGTGAATTCGTTGGTGAGACTATGCCTTGTTTGATGAGTTGTTCGCTTTCTTCATTTGcctgttgtagtAACGCTGGAGGCATCCCTGCATGACTTGCCTTTCTTGGTGTAGTGATTACATTTTCTTTAAAGGGAAGAGATACAAAGAACGCCGGATTAAGCTATAATGACTTCTTGCATTTTTGGAGGAATTCACTGTGAGAATCTGCACATGAGACGTTTTCAATTTCTCCTTTGAtgttttcgaactttaacaccattggatcttcgattgtgaagagtcttgggatggttgcaAAAGCTTTGAAGAAACTTTTCCATTTAACTCCTCTAGGCTCGATGGAGATATCAAAATTTTTCTTTAATGCATAATAGCAATCCCATCCTAGGATGATATCTTTGCCAAGTACTTGAGTCGTTATCTGGCATCCTCGAAAGACTTCTATGGTGATTGATCTTGATTTGAGTTTGATCTTTAGAGAACCCGCATTtgcaactctgaACTCTTGCTGGTATGGTAACCACATGGATGTCGGAAAGACTTTTGGGTTCATGATCGAGGTATAAGCCCCAGTATCTAAGAAAGCAATAATATGGACTGGACGCATCTCTTTTTCTGGATCAAAAATTGTTACAGGGAGATGTGGTGTCTGTACCTCTTCTTGCTGTGGAATTTCTGTAATTTTATAGCATCCTTCTTCCTTTTCAGATGATGATTCGTCGTCTTTAGAATCTAAATATCCGCATATTGCATCTTTTATATCACTATCGTAGGAGAGTATTGATTCAAGATCGTGATGACATAGATAAAGTTCTGGGGCAATATTGGATATCGAATTGATGAGATATTGCTCATATTTCTTGGAATTATTAGAGCAATTTTTGCGAAGTAACCTTCTTTGTGACAGAGGAAGCATCTTGTATTCTCTTGAAAGTGTGTTTTCTTCTATAGAATCGTTTACGCCTGAATGGGGATTTTCTTGGGAGACGCCTTGTTTGTGAGATATTTTCCTGCGTTTATCACATGAGCAAGATTGTTTCTTCGAACATTTGATAGATAAATTGGACTTCGAGCATACTTTGGATAGATGCTTTGATTTGTCCATGAATTTCTGACTAGAATTCTTTCTGCTTGCAGAGCTTATCGAGTGTTCGGAAGACATACTGCTGGATTTGGCCTATGGAAATTTCTTTAACCGCTTGGTTTTGATCTTTGATGTAGAGCTTCGTTTGTTGGCTGAGATAATCGTCTATGGAGGAGACATATACATGCTTCAAACTTAGATTATTGAGACCATCAAGTGCATAGTatctttttgttTGTCTTTCAAAATGTTTTGCCAGATCTCTTTTCTTCAAGAAACAATATTTTGCTGCAAAGTATTCTTCTTGGAGTTGTTTTCTGATATGGTTGGGAGTACCGATAAACTCTTTGTGGATTTCTCCTAGTAatattgggatagtagtttggtaaacttgtaggtgtctgtactctccGAGGAAATTCCACCATTCTTTTAGTGTGCCAGAAAGGCGAGCAGTGAATTATTAGATAACTTGATAAGTTGGTGAAgtaagggcttCGGAAGTCAGCCATGCATGGAAGTCATCAAGACGTTCATTCCATTTTTCAAAGGGAATGTCATCAAATGTGATTGTGATGACTCTTGATGCAAATTGTCTTGCTTTTCTGATATCTTCATGTTGGTCATACTGAAATTGCATTTCTTCGTCATTGGCTATTTCATTGATGTTTGGCTCTTCttttggcatgCTGCTTTCTCCTTGTTGTATGGCAAACTGTTTTGAGAGCGATATATCATCTTCTG

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1629

Start:

1134371  

End:

1135999

Strand:

-

>Scaffold15774_LTR-Caulimovirus_90

TATAACATAACGAGATGTGAATATCTCATCAGAtgataggaaacCTGGGGAAGGTATTGCTGGTTTTGTTGTATTTTGTGAAAGTAATCCTGGGGAATAGGAACCTTGGTATGAAGGCTCCGTATATAAATTGGTGAAGGGAGGAAAGTATAAATATGTCGTTTTTCTGTTCTGCTTTACTTTCAAGGCATCGTTGAAGATCTTTAAGCTGATTTTTTAGATTTGACatttctgcttctttgcttcgaaagcttgaagtattcaccaacatgttttgtgccattaacaacatctcttggtgtagttagtctaatcggccatggatctctgcgatggagctttgcaaggtgttgaatCTTTTGTCGTAGTTATTCGCCATTTGATCCATTTTGTGATTGATTGTATGTAGAAGTTGGTTTTGAGCTATGTCGTTCTCTGTTTGCCAATTGAGAAATTTTTCTGCTTGACTTAGTTGGTCGAGTCCAGCAGAATTAACTGTACTTGGTATTATCTTCGAGCTATGAGATACATAGTCTTTCGTGAAGTCGTCAGGCGGAGGGAAATTGTTTGGGCTGAACATCATGACTTCAGTAGGTTTTGGATTTTTTTTGTGGAATATTGGACGATATACTTGTATCTTGGATTATCTTCTCCCAAGGGCCTATTGTTGGATCTCCATCTAGATATCGTTTGTAGAGTGAGTCTTTCTTTTCTTTTCGTCTTCTTCTTTTCTCGTCATCAGACTCCGATTTATATTCAGTACAGGCAGTACAGGTGCAGACATCGAAGAATTGATGGCCATTTTCGTCCTTGAAGAGATGTAAAATTGATCCATCATGCTCAAAAGAGATTGTCTTTGGGTATTGGTCTTTGTAAGGGCCATGGAATTCTTGTTCATCAACTTGAATGGACAATTGGATGAACATCGGTCTTCGGGATAGGGATGTTCGCGGCTTCTCGAAttttatcttcgtcgttccatcatttcttggttgaaaagatacttcggaagactgaatggggccttgaggtgcctgatgaagtttttcataacttgttacccatgtttcaggatgcttctgtatgagttcttctcgggatatTTGGCGAGGGATCTGGATAGCATTAGGTGCTTGGGAGGCTGAAGTGACTTCTAGAAATAGTGCTTCATCTGTTGAAGGAAGgaccaagtcaaGAGCATGGTCTTGAACTCGGTAAACCATCTAATGGTGTAATGTAGCTATTACACTTGTCTCTTGTATAGGTGCGCCAACAATCTGTAATTGAACTTTGAGTGCCTTCAAGATATTAGGGGAACAGTGTTACAAAAATTGTTCctgcatttagCGTAGCTTGGACGGTGCCTATACATGTTTGTTGATAAGTCTTGAGCCTGGAGACAACTAAAAGCGATCCATGATGTGACCGGTAATCCTTTTCGAGCATGTAAAGTGAGTCCGATTCGTACAACACCAAAGTGTAGATgtgtgaatccttgctgttgccaaagccttggaagatgttccgggatgtttagtgagatgaatTGCTCTTCTTCGGTGGCTGGAACTTGGCATGAGGAGAATTTGCTGGCTTGGACATATTCTTTGACCTTTCTGGTGGAAGATG

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

296

Start:

1136016  

End:

1136311

Strand:

-

>Scaffold15774_LTR-Caulimovirus_91

AACACCACGAACAGAAAAGATACTTGATTTCCTAGCGAAGATTTCATAAGGATTTACAAGAGGAAGAGTAGTTTCAGgtaatcgatctcctggaacatattcaacctcataaagaaaatctatattaaaagaggatgcttgatttctgtgtttaggtaaagtAGAAAATTTTAAAGGGGAAGGGATGATTTGAGAGTTAGACATTGATGATGATGGTTAACTTTTTCCAGAAACTCAAACAAACaacataaacaaTGATTCTCACTAACATACACAAATCATGCGCTCTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1390

Start:

2351789  

End:

2353178

Strand:

-

>Scaffold15774_LTR-Caulimovirus_92

gtaCCTGTTTTGGAGAAATTCTCGAGTCAAAAAATCTGGAATAAAATTTGTTTTTTCTCCTTTAATATATTCTATATCAAAATCGAAAATACTTAGTaatgcctgccATCGGGCAAAAATTTGTTTTGAAGCAAGATTTTTAACATCTTTTGGTAAAACATCTTTGCCGCTTTTACAATCAATTCTTAGTAAAAACTTTTGAtttaaaagatcGCTTTGAAATTTTTGTATACATAAAACTATACTTAATATTTCTTTTTAAATAGTTGAATAATTTTTCTGGGTCTCATTCCAATGAGCATAAGTAAATTGTATTATATTTTTACGACCGGTTGTTTCTTTTTGTTTCAGAATACCCTCGTATCCTATATCAGAGGCATCTTTTTCACAATTTTTTCTAGGTTTGGGTCCGCAATatgcagacatgGAATTTCTAAGACTTGTTTTTTAATCTGTTGGACAAGAGCGGTATGCTCTTCAGTCCAaggggctgggtTTTTCTTTAAACGATCATGTAGTAGTCTACCTATTCTGTTAATATTTGGACAAAAATCTAGaacataatttAGACTTCCTAGGAACCTTTGTAATTGGGTTTTGTCTAAGAGTTTGTTAGAAAATTTATTTGCAAACTCTAATGATCTTTCTATTGGTTTTATCATTCATTTGGATATGTAATGACCAAGAAATCTTATTTTGGTTTGCAAAAAAAGGCATTTTTGTTTTGGAAATAACAAGTCCATTTTTTCGTGCAACATAGTAAAATGCTTTTAGATGTTTAAAGTGTTCATCAAGAGAGTTTGAAAAGATTAGTATGTcatcaatatatattatacaaaattttgagtattctgagaatatgtcattcataattctttgaaattttgaaggtgcattctttaaaccaaagggcatcacgttccattggtattgcccaaaaggaacagtaaATGTTGTTTTATATCGATCATTTTCAGATATTTGGATTTGCCAAAATCCTTATTTTAAATCGAATTTTGAAAATATATGTGTAGAATGAAGTTTTTGAAGGAGGTCTTTTTTATTAGGAATTGGATATCTAATCCattttaatgcTGAATTTAACGGTTTGTAATTTATTACAAGTCTTGAAGTTCCTCTTTCTATTTCAGAATTTTTGTTTATTTAGAAAGCAGAACAAGACCATTGAGATCTTAACTTTGAAATAAATTTTTTGTTTAAAAGTTCTGAAATTTCTCTCTTACAATGACTCTTTAAATCAGAGTTCATCTGAATTGGTCGAGGCTTTGTAGGAATTTCTGTTTCATCAAAATTTTTTTCATAGGGTAGATCAACAATGTGTTGTTTtctatcccagAAAGCAGTTGGTAAATCTGAACATAATTGTTTT

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1113

Start:

3120111  

End:

3121223

Strand:

+

>Scaffold15774_LTR-Caulimovirus_93

ACTTAAGCAATATTCCAGTCAAGAAATGATGGAACCACATAAATCAAGTTCGAAaagccaagaacatcctctttccgaaggcCACCGTTGTTCACGCAGTTTTCTATCCAAATCGATGAACGAGAACTCCAAAGGCATTACAAAGAGCAATATCCAAAACCAAACTCTTTTGAGAAAGATGGATCATTCGTATATCCATTCAAAgatgaaaatggACATTGTTTCTTCGACGTCTGCAATTGTACAGCTTGTGAAGAAGCTGCTTATGAATCTAACGATGAAAAAAGAAGACGAATGAGAGCGAATAAAGATCCCCTTTACAAACAATATCTAGAAGGAGATCCAAACAAATTCCCACCATCCGAAGATTTCACTAAGGGTGATATTGTTCATAGTCCAAAGATAGTTCCAAATATTATCAACTCCTCTGGCCCTATTCAAATTACTCAAGCAGAAAAAGTTCTCAACTGGCAAACGGAGAatgttgtcgctcagaatcaactccttcatacgatcaatcaaaaaatggatcaaatggcgaacaactacagcaaaagattcaacggcttacagagctccATAACAGAAATTCATGAACGTTTGGACCAGCTGCATCTAGAAATGATGACAATGGCAAAAAACAAGCTAGTCAACACTTCAAGTTTTCGAAGCAaagaagctgagATGTCAAGCCTCAAAAATCAATTAAAAGATCTTCAAAAATACCTTGAAAGTATGAAGCAGAACAGAAGATCGACAGGTGCATTCTTTCCTCCATTCGGGAATATAGATacagaaccttCGTATCAAACATCTTACTCTCCGGGATTCCTTTTAAAAGGCAGTACAAGACCAGTCACACCTTCAGTAGGTTTCCTGTCATCTGATGAAGTGTTCACATCCCGTTATGCTATGCCATctttaccaactttcaagccaatatatcgggagaaaacaaggagatacaaagaaaaagaaacgccagcccaaccatttaaaaaaccaaTTCTCTCTTCCTCACCGTCAAGCCACGACTCTTTTGAAGAACAAAAAGGAGGAGAAGACAAAGGAAAGGGCAAGGCTGAAGAAATTAATATCATTGAGTTCTCAATG

Boechera stricta (v1.2)

ID:

Scaffold15774_LTR-Caulimovirus_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1168

Start:

3121375  

End:

3122542

Strand:

+

>Scaffold15774_LTR-Caulimovirus_94

CAGAAGATGATGAATCCCTTCCAAGCAAATCCGCCATAATTGAAGGAAGCCACAATCCTAAAGAGGAACCTGACATAGATGAAGTAtattcagatgAAGAAATGCGCGATTATCGCCAGTTCCATGGTGAAAATGGGTAACCAAGACAATTTGCCTCAAAAATCATCACATTTACATTTGATGACATTTCGTTTAACAAATGGAATGATCATCTTGATGAATTCTATGCATGGATGACTTCAAGCCCTTACTTCACCAACACATATCGTCATTCAAAAATTCACTACTCGTCTTTCTGGAGCATTAAAGGAATGGTGGAACTCTCTTGGATATTACAGACAAATGCAAGTCCATCAAACTACCATTCCGCTACTAGTAGGAAAAATTCATAGAGAATTCATCGGCACTCCtaatcatatcAAAGATCAGTTACAAGAAGAATATTTTGCGGCAAAATGTTATTCTCTCCAGAAGAAAGATCTTGCAAAACATTTTGAAAGACAAACGAAAAGATATTATGCCCTTGATGGTCTTAACAACCCAAGTTTGAAgcacatctatCTTTCATCCATTCCCAACTATCTCAGCCAACAAACGAAGCTCTATATTAGAGATCAAAACCAGACGATTGAAGAAATCTCCATTGACCAAATCCAACAATACGTCTTCAGAACACTTGATAAACTCTGTAAACAAAAAGAGTTTTGGACGAAATTCATGGACAACTCAAAACATCTAACGAAGATATGTTCCAAATCCAACTTATCCATCAAGTGTTCCAAAAGGAAATCGTGTTCGTGTAGCGACCGCAAGAACTTTCATAAGTCCAAAAAGTTCTCAAGAAAGCCTCCATTCAGACgcaaaagattCTTTAGACGGAAAAGAAGTTTCAAGAAAACAACAAAATGTTTTGTCTGTCACAGAGAATGACACTTTGCAAAAAATTGTCCAAacaaatccaaGAAGAAGAGGCAGTATCTCGTCAACTCCATATCCATCATAACGTCTGAACTTGATCTCGATCACCATGATCTTGAGTCAattttatcttaTGACAGCGATGAAAATGATGCGATATGCGGATAGTCAGACACGGAAGAAGAAGAAATATCATCTGAAGAAGAAGAATGATACAAGATTACAAAATTACCAAGACAAGAAGAAGAAC

Boechera stricta (v1.2)

ID:

Scaffold15860_LTR-Caulimovirus_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

177

Start:

71872  

End:

72048

Strand:

-

>Scaffold15860_LTR-Caulimovirus_95

TGGAAAAATTCTCGATTCCAAAAATCTCGATCAAAATTTGTTTTTCCTTTAATATACTCTATATCAAAGTCAAAAATACTTAGTAAAGTTTGCAATCGAGCAAAAATTTGTTTTGAATCAAGATTTTTAACATCTTTtttgtaaaacATCTTTGGCACTTTTACAATCAATTCTTAA

Boechera stricta (v1.2)

ID:

Scaffold15860_LTR-Caulimovirus_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

845

Start:

74097  

End:

74941

Strand:

+

>Scaffold15860_LTR-Caulimovirus_96

CAATTATGTTCAGACTTACCAACTGTCTGAGATATAAAACAACATTTTGTTGATCTACCCTATAAAGAGAAATATGATGAAAGAGAAATTCATACAAAGGCTTGTCTAATTCAGACGAAATCTGATTTAGATAGTCATTGTAAAAAAGAAATTTTAGAACTTCTAAACAAGAGATTAATTTCAAAATCAAGATCTCCATGGTCTTGTGCAACTTTTTATGTGAATAAAAACTCTGAAATAGAAAGAGGGGCTCCAAGACTTGTAATAAATTACAAACCATTGAATTCTCCATTAAAATAAATTAGATATCCAATACCAAATAAAACATATCTCCTTCAAAAACTACATTCTGCACACGTATTTTCAAAATTCGATTTAAAATCAAGATTTGGGCAAATCCAAATATCTGAAAATGATCGATATAAAACAACATTCACTATTCTTTTTGGACAATACCAATGGAACGTAATGCCCTTTGGTTTGAAAAATGCGCCTTCGGAATTTCAAAGAATTATGAATGACAAACTTTCAGAATATTCAAAATTTTTGTATAGTATATATTGATGACATACTTATCTTCTCAAACTCTCTCGATAAACATTTCGAACACTTAAAAACATTTTACCATGTCGTATGTAAAAATAGACTTGTTATTTCAAAAACAAAGATGTCTTTATACCAAACCAAAATTAGATTTCCTGGTTATTACATATTCAAAGGCATGATAAAACCAAAAGAATGATCATTAGAATTTGCAAACAATTTCTTGACAAACTTTTGGACAAAACTCAATTACAAAGGTTCCTTGGAAGTCTTAATTACGTCTTAGATTTTTTCCAAATATC

Boechera stricta (v1.2)

ID:

Scaffold16335_LTR-Caulimovirus_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3344

Start:

19453  

End:

22796

Strand:

-

>Scaffold16335_LTR-Caulimovirus_97

TATTGTTGGGTAAAGTGGCTAGGAGTTACTAAGGGAATGGATTTAGAGATAGATTTGACTAAAAGTTGGTCGTGGCGACTGGTTTGGAAAAGTGTTTGAATGGTGGATAGGGAGCAACGATCGAGATTGTATTTATCCCACCATTTGACTCGGTATTCTTTGACAAGGGAATATGGCATATCGGGTAGGGTGAGTAAAAGGTTAAAATGCCACGAGCAGATCCATGGGATACCCAGGTCTGCATGAAAGAGTATTTTGGGATAGGGGCCGATGGGTTTTTGGGTTAGGTGTTTGGTGAAGTATGGGTAGGATGTTTTTAGAACTTCAGGTGGATAGATTTTGTCGGAAGGTCCGAACCAATGCCACCATTTATTAAACCATCCGGGTATGTGTTTAGGGAATTTTTGGTCAAAAGAAATGAACCAGGAGTGGTCATAGGGACGTAGGTATAGGAATCTGAGCCAGGCGTTTTGGTAATCTATATAAGAGTAGCCTGGGATTGGAAAACCGGGTTGAGAAAAGGGTCTTGTAGTATGGAGGTGGAGTAGACCAAGGTCGTTGATAGATGCTATACGGAGTATTTTACAGGTGGAGTAAGAGATGAGGTTTGGATTAGTTTTGTCTGGGTAATGAGTTACTTCGATAGATTTTGAGTATACCAGAATATACTCATAGAAGGTTCGGTTTTTGGTTATGTTGTCTgttggatagaGTGTATCTTGATAAAAGGTTCGGTTTATGAACTGCTGGAGTTCTTTGAGTTTAATGGGCTCGGTATGATGGGTCGTCATAAGGTGTTGTTTTTGGGGTTTAAGGAAATAGGTAGATTTGGTTAGTGGCTCTTGGATAGGTTGGGAGGGTTGGCCCTTTTCTGTGGCTACAGCCTTTGAATAGGAAAGAGGTGGAAATTCAGCTAACGCTGAATATTGATTTTGAATAGTCGAGGGTATTCCTTGAAGGTGTGGTTGGTTCTTGATATAATCGGACGAAGTCATAGGTTTTTTTGACTTAGGGTCTGTCATCTTGAATATCTTGTTGATTATCTGTGAATTTACCCTGTAAATATTCACGTGTTAGAAAATCTGGTAAAGAATTATTTTCGCCTTTAATATATTGAAtatcgaaatcaAATACTGAAAGAATAGCTTGCCATCGGGCAAAAATTTGTTTTGATACCAAATTTTTGACATCCTTTTTCAGTATTTCTTTTGCTGATTTACAGTCGACTCGTAATAAAAAAAATTTATTGATTAAATCATCTTGAAATTTGGAAATGCAATTAACTATAGAAAGGACTTCTTTTTTAACAGTTGAATAATTTTTCTGGGGTCCTAGCCAGATTCCAGAATGAAATCTAGCTATTGTTTCTTGACTAGATTCTGAAAGTTTTTGTTTAAGTATGCCACCATAACCTAATTCAGAAGCATCAGTTTCTACAATCATATATGCTTCTGGGTTTGGTATAGTAAGACATGgaagggttttaACCTTCTGTTTAATTTGTTGAACTAATTTTGTATGTTGAATAGTCCAAGGCTTTGGATTTTTTTGTAATCGTtgaaataaaggTTGAATAGTTTTACGGAGATTTGGAAGAAAATCCGAAACATAGTTTAGACATCCTAAAAATCGTTGTAATTGAGTTTTCTCTCTTAACTCATCGGGGAATTTGTCTGCAAATTCTATTGATCTTGAGATGGGAACAATAGTTCCTTGATAAATGTTATGTCCTAAAAATCTTATTTTTGTTTGGAATAAGGACATCTTTTTTGCTGATACTACTAATCCATGTTTTGTGACTATGTTTAAAAATGTTTTTAAGTGATGGAAATGTTGATCGATGGATGTTGAATATATTAATACATCGTCAATatagacaatggtgaatttagaatattgattgaatatatcattcataatatgttgaaattcagaaggtgcatttttaagaccaaaaggcattacattccattcataatgtccgaatggtattgtggatgcagttttgtatttatctttttcggctatttgaatttgccaaaatccgcttttcatatcaaattttgaaTATACTTTAGCATTGTATAATCGTTTTAATAAATCTCGTTTATTGGGTATTGGATATCTAATCCATTGAAGTACATCGTTTAGGGGTTTGTAATtaattactagtCGTGGTACTCCCCGTTCTTTCTCGGCTTGATTATTAACATAAAAGGCTGAACAACTCCAAGGGGATTTGGACGGTCTGATAAGTTTTTTCGTGAGTAGATCATTTATTTCTTGCTTACAAATTTCTAACAATTCCTTATTCATCTGAATAGGTCTTGCTTTAGTGGGTATATTTTTCTCATTGAATTCCTTTATATATGGGAGTTCAACAGTATGCTGTTTTCTTTCCCAAAAGGCGTTTGGTATTTCCGAACATATTTGTTTTACAAGATCAGCTTCGATAGCTTTTATGTTCTCTTTTATATACTGCATATTAAGTTGTTCTTCTATTTTTGAATAAGTTATTTCTTCCTGCAGATGTTGAATATGCTTTTGTTTTCCTTTAATTATGTTTATTGTTTTTTGAATAGTGTTTTGTTGAAGACTTAAAATTTCTTTAGTCTTCATTGGAGATATAAAATTGAATAATAACTTAGTACCTACTACTTTTGTCGATATACCTATTTCAGTTaccttaaaagggtaaatttgagtgaagaaaggagtgcctaatatgatttctTGTGTTAGGTTTTTTACTAAAATAAACTGATTCTTAAAACAGTATCCTTGGTTATATATTTTCGCACATGGTAGTTTATATTGTACCTTTAAACTACTACCATTAGCACCACTTAATCTTTCGGTGGTTTTTTCATAATATTTTGTTGGAATAATTCCTTCacggatacaattgtaatccgcgccagtatccattaaggcaattatgtttattttaaaatcatggcctacatgtaaagtaataTTTGTGTACCATTTTTGATAATTAATTTTATTAATTATTTGTATATAATCTTTATTATCTAATTGTTCTATGTTATTATTAATCTCTGGgttttgattacTTGATGATGCTTGATTATTTTGTGAGTCGATTAGAGATAGTCTTGCGTCTATTTGTCATTGCTTAAGCTCTTGTTGATGAATAAACACCTGTAACTCTTTAATTTGAGCTTTAATCTGCTTAATTTCATTTTGTAATTCGCCGGTTGATACTTGTTTGAATAAACTTTGAGTTGGATATttctcaaatattttatttAGACTAAATGGTTGTGGCGTAGATATTTTAGTTTCTTGATTTATTAAGTCTTTTAATTTTATTAAATATT

Boechera stricta (v1.2)

ID:

Scaffold16335_LTR-Caulimovirus_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

263

Start:

22816  

End:

23078

Strand:

-

>Scaffold16335_LTR-Caulimovirus_98

ATCTATTTTATCTATGATATTAGTAAGAATTGTTTATCTTTATCATTGGTTATAACGTTAATTGTTTTACAATTGCTTAAATTGTCAGATAGTTCCTGTGATTCGGTTGAAGAATCACTTGAGTTTTCAATTTCATTTATTAAGTATTCATCATTAGAATTTTCCGACGATTCTGATTCTGATATTAGAAGTTTGGTTAATCTTTCTTGAATACCAGGTTGATCTTGAAATATTTCATTTATTTTCTTTTTCATCTTGCATTC

Boechera stricta (v1.2)

ID:

Scaffold16335_LTR-Caulimovirus_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

240

Start:

25659  

End:

25898

Strand:

-

>Scaffold16335_LTR-Caulimovirus_99

GTTGTTAATTTTGTCATAATTTCTCTTGAATTAATAGTTGATTTAGAAGTAGAAGAAGATGTATGTTTTGGCTTGAACATCTTTCTAAATGATAAAGCTATGGTTATGATCAGAAGAAGTTTTCAAAAGAAACTTACCACTTCTACGGGATCGCTTTTTGCTGGCTTGCCAACGGTCTTACGGCCTACTCCGAGGACTTGCTGCCTGGAACACCATCAACTCCGGCGGTTTAGTAGAAGA

Boechera stricta (v1.2)

ID:

Scaffold1774_LTR-Caulimovirus_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

184

Start:

66194  

End:

66377

Strand:

-

>Scaffold1774_LTR-Caulimovirus_100

AGGAAGAAACAAAGCTTATGAAGATGTTGAGATCTAGAAAACTTAGAGAGAAtttagagagacatgagagtttagagagagaaaatattttatagaatgaaagttatctcttacataggggggggggggggtacacacttatttataggagaggaTTAAGTTGCTTGCGTAAGCACTTACCTCA