ID Class Order Superfamily Length Start End Strand View
scaffold10379|size412_LTR-Copia_81 RetrotransposonsLTRLTR-Copia13931169+
scaffold10381|size412_LTR-Copia_82 RetrotransposonsLTRLTR-Copia1135117-
scaffold103|size234654_LTR-Copia_83 RetrotransposonsLTRLTR-Copia1041798718090+
scaffold103|size234654_LTR-Copia_84 RetrotransposonsLTRLTR-Copia1051807818182-
scaffold103|size234654_LTR-Copia_85 RetrotransposonsLTRLTR-Copia1282679126918-
scaffold103|size234654_LTR-Copia_86 RetrotransposonsLTRLTR-Copia1054294043044+
scaffold103|size234654_LTR-Copia_87 RetrotransposonsLTRLTR-Copia1254310443228+
scaffold103|size234654_LTR-Copia_88 RetrotransposonsLTRLTR-Copia2875215652442-
scaffold103|size234654_LTR-Copia_89 RetrotransposonsLTRLTR-Copia1157718177295-
scaffold103|size234654_LTR-Copia_90 RetrotransposonsLTRLTR-Copia2968117181466-
scaffold103|size234654_LTR-Copia_91 RetrotransposonsLTRLTR-Copia1948156181754-
scaffold103|size234654_LTR-Copia_92 RetrotransposonsLTRLTR-Copia1598175181909-
scaffold103|size234654_LTR-Copia_93 RetrotransposonsLTRLTR-Copia1398216282300-
scaffold103|size234654_LTR-Copia_94 RetrotransposonsLTRLTR-Copia1878278682972-
scaffold103|size234654_LTR-Copia_95 RetrotransposonsLTRLTR-Copia2968306683361-
scaffold103|size234654_LTR-Copia_96 RetrotransposonsLTRLTR-Copia1398936089498+
scaffold103|size234654_LTR-Copia_97 RetrotransposonsLTRLTR-Copia3409395094289-
scaffold103|size234654_LTR-Copia_98 RetrotransposonsLTRLTR-Copia1619413594295+
scaffold103|size234654_LTR-Copia_99 RetrotransposonsLTRLTR-Copia158110464110621+
scaffold103|size234654_LTR-Copia_100 RetrotransposonsLTRLTR-Copia194119178119371+

< 5 6 7 8 9 > Total 964


Boechera retrofracta (v1.0)

ID:

scaffold10379|size412_LTR-Copia_81

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

139

Start:

31  

End:

169

Strand:

+

>scaffold10379|size412_LTR-Copia_81

AAAAGATGAAATGATTTCCGCCGAGTAGAGGGGTAGGAAAATTTCCTATGACCCCATTATTCTACTTGGATAAGGAATGATCACACAAAGGCCTGAAGTGAGGGGTAGGAAAATTTCCTATGACCCCATTATTCACCTA

Boechera retrofracta (v1.0)

ID:

scaffold10381|size412_LTR-Copia_82

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

113

Start:

5  

End:

117

Strand:

-

>scaffold10381|size412_LTR-Copia_82

CCCCATAGCCCTCGGCTCCTTAGGGCAGTCTTTGCAGTCCTTGACCACAACAAGTAGTTATTCCCCTTGAGAACAACTGGTAGAACAGCTTGCTTTTGCATCTCCATGAATTG

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_83

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

104

Start:

17987  

End:

18090

Strand:

+

>scaffold103|size234654_LTR-Copia_83

GATCGATCGATCCTTCGCTTGATCGATCGATCTCCACAATCCAAACAGAGCCGTAAGAAAACAGAGGAGGACTGATCGATCGATTACCCGTGGATCGATCGATC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_84

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

105

Start:

18078  

End:

18182

Strand:

-

>scaffold103|size234654_LTR-Copia_84

GGATCGATCGATCATACCTGGATCGATCGATCTTAGCGCGTCAAGTCGATCTTAAAATCTTACGGCAAAAATGGATCGACCGATCGGCCCTTCATCGATCGATCT

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_85

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

128

Start:

26791  

End:

26918

Strand:

-

>scaffold103|size234654_LTR-Copia_85

GATCGATCGATCCATATGTTGGATCGATCGATCAGAATCCCGACCGATCGAACCGAAACACCTAGGTCGATCCAAAAACTTTACGGCAAAACAGATCGATCGATCCTCCGCTTGATCGATCGATCTCT

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_86

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

105

Start:

42940  

End:

43044

Strand:

+

>scaffold103|size234654_LTR-Copia_86

AGATCGATCGATCAAGGGCTGATCGGTCGATCCATTTTTGCCGTAAGATTTTAAGATCGACTCGACGCACTAAGATCGATCGATCCAGGTCTGATCGATCGATCC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_87

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

125

Start:

43104  

End:

43228

Strand:

+

>scaffold103|size234654_LTR-Copia_87

GATCGATCGATCAAGCGGAGGATCGATCGATCTGTTTCGCCGTAAAGTTTTTGGATCGACCCAGGTGTTTCGGTTCGATCGGTCAAGATTCTGATCGATCGATCCAACATATGGATCGATCGATC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_88

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

287

Start:

52156  

End:

52442

Strand:

-

>scaffold103|size234654_LTR-Copia_88

GGATCGATCGATCCAGGGGCAGATCGATCGATCCGTTTCGCCGTAAGAATTCAGGATCGATTAGGACGCCATAGAACGATCGATCTGTCTCGCTCTGTTCTGTATGCTCTCTTCTGTAGTCAGGATTGATCGATCCAGGGGAGGGATCGATTGGTCCAGTTTTGCGTAAGTTTTTAGGATCGACTGGGAAGAGATCAGATCGATCGGTCGGAGGTTGGATTGATCGATCGATCATGTTTCAGCGTAAATAATTATGATTGATTTGAGTTGATTAGGATCGACCGATC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_89

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

115

Start:

77181  

End:

77295

Strand:

-

>scaffold103|size234654_LTR-Copia_89

ATATGATTATGGCTTGGTTTGGCATAGGTGGAGACAAGCCTTATCCTCACATCAGCGGCCCGTGTGCTGGTTTGGGGGGAGACTAGGAGATTAATTAAGAGCGATATGGCACCAA

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_90

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

296

Start:

81171  

End:

81466

Strand:

-

>scaffold103|size234654_LTR-Copia_90

TTGATGTTTACGGTTATGAAGAATAAAAAACTTGGACGAGAGAGAAACAAAGTATAAAAGAAAACTGAAACTTCTTATTGACTTTCTTGTGTTATACTCGTCACACCACAAACACAAACACACGTTACAAAATCAAGACTCAATCTATACTTATACACGTGAACCATTGTGTTTGAAACAACATGAATGTATAATTAATAAACACAACTGTACGAAAGACATTCGTGACTCTTCATATATAACTAACTTATACAAATGTGATTTTGTATTATACGAGATATGATTATTCTTCAACA

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_91

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

194

Start:

81561  

End:

81754

Strand:

-

>scaffold103|size234654_LTR-Copia_91

GCTATGTGACCCGATTTGTCACACACATAACACTTTTTTTCATTTTTCGCACTCATTTGTGGAACGCATCCGTTCTTTCTTCTCCAACAATCTACTTCATTGTGATTGTCTCTTTTACATACGCCACACCATCTCTTGGTCTTCTCATGGCGTTTATTTTCTTGTTTGCTTCCTCCTTTTCGAACCAAGCTTTT

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_92

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

159

Start:

81751  

End:

81909

Strand:

-

>scaffold103|size234654_LTR-Copia_92

TTTTGTGCGTGATTCTTCACGTCTTCTTCGGTTGTCTCTCCAACTGGCTTCTGCTTCCTTTTTCTCTTAGGTAAGCACTCTTTCTTTGCTTGGTGTCTTCCTTGATCACCAGCGTGCATGATTCTTCACGTCTTCTTCGGTTGTCTCTCCAACCGGCTT

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_93

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

139

Start:

82162  

End:

82300

Strand:

-

>scaffold103|size234654_LTR-Copia_93

TTTTTCTGATATTTTAATTTTCTCGTCCATAGCATCTTGCCATTCTTTGAACTCACCAGCTTCATCATACTAATGTGTTTCATTCAACAATAAAACATGCTTCATATATTTGAGCAAAATCTTCAAATTCCACCCTTGG

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_94

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

187

Start:

82786  

End:

82972

Strand:

-

>scaffold103|size234654_LTR-Copia_94

GATTTTCTTCTTGATTTTAATCATCGCCGGTGTGTTTACATCCGTAGAAACAACCGCTGGTACTCCATTCTCAATCACATCCCAAAGCTTTATCGTCTTTAGGATGTCTTCATTTTGATTTGCCAAAAAGTTAAAGGCAACGCCATGGAAGATCAGTATTGCTTGGAGATGTTGTCTCCATAACTCT

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_95

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

296

Start:

83066  

End:

83361

Strand:

-

>scaffold103|size234654_LTR-Copia_95

TTGATGTTTACGGTTATGAAGAATAAAAAACTTGGACGAGAGAGAAACAAAGTATAAAAGAAAACTGAAACTTCTTATTGACTTTCTTGTGTTATACTCGTCACACCACAAACACAAACACACGTTACAAAATCAAGACTCAATCTATACTTATACACGTGAACCATTGTGTTTGAAACAACATGAATGTATAATTAATAAACACAACTGTACGAAAGACATTCGTGACTCTTCATATATAACTAACTTATACAAATGTGATTTTGTATTATACGAGATATGATTATTCTTCAACA

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_96

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

139

Start:

89360  

End:

89498

Strand:

+

>scaffold103|size234654_LTR-Copia_96

AAAAGATGAAATGATTTCCGCCGAGTAGAGGGGTAGGAAAATTTCCTATGACCCCATTATTCTACTTGGATAAGGGATGATCACACGAAAGCCTGAAGTGAGGGGTAGGAAAATTTCCTATGACCCCATTATTCACCTA

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_97

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

340

Start:

93950  

End:

94289

Strand:

-

>scaffold103|size234654_LTR-Copia_97

GATCGATCGATCTATATGTTAGATCGATCGTTCGTTCTATCGCACCCAAATCGATCTTAGAATCTTACGATGAAACAGATCGATCGATCAGCCCATACGATCGATCGATCGGAACCCTGACTGATCGTTCCTACCATTCCAAGTCGATCATCAGATGATACGGAAAATTGAGGTCGGTCCGGATCGATCGATCGATCCGCACCTGATCGGTCGATCACCTCGACTCACCGTCGATCAAAAACCCATACGGCAAAACTGATCGATCGATCCCTCTCATGATCGATCGATCTGACCTCTTATAACATCAAGACGCTTAACCGACCTACTGGATCGATCGATC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_98

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

161

Start:

94135  

End:

94295

Strand:

+

>scaffold103|size234654_LTR-Copia_98

GATCGATCGATCCGCACCTGATCGGTCGATCACCTCGACTCACCGTCGATCAAAAACCCATACGGCAAAACTGATCGATCGATCCCTCTCATGATCGATCGATCTGACCTCTTATAACATCAAGACGCTTAACCGACCTACTGGATCGATCGATCGATCCC

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_99

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

158

Start:

110464  

End:

110621

Strand:

+

>scaffold103|size234654_LTR-Copia_99

GATCGATCGGAACCCCGACGATCGAATCGAAGCACCTAGGTTGATCCAAAAACTTTACGGCGAAACGGATCGATCGATCAGCCCATACGATCGATCGATCGGAACCCTGACCCGTCGGTCCTACCATTCCAAGTCGATCCTCAAATTTTACGGCAAAA

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR-Copia_100

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

194

Start:

119178  

End:

119371

Strand:

+

>scaffold103|size234654_LTR-Copia_100

AAACGGATCGATCGATATAAACAAAGGATCAATCGATCCTGACTTGCCAATACATCGTCGACAGCAGACATGTTGCGATCAACCGTTCGATCGATCAGTCTAAGCTGAGAACGATCGATCTCGCTTCAGTGACTCGATGGCCACGTGTTTTGTAAAAGGGATCGATCGATCCTATACTAGGATCGATCGATCTA