ID Class Order Superfamily Length Start End Strand View
scaffold7|size4355475_LTR-Caulimovirus_621 RetrotransposonsLTRLTR-Caulimovirus82763991764072+
scaffold7|size4355475_LTR-Caulimovirus_622 RetrotransposonsLTRLTR-Caulimovirus90764070764159-
scaffold7|size4355475_LTR-Caulimovirus_623 RetrotransposonsLTRLTR-Caulimovirus84764171764254-
scaffold7|size4355475_LTR-Caulimovirus_624 RetrotransposonsLTRLTR-Caulimovirus17418148261814999-
scaffold80|size432629_LTR-Caulimovirus_625 RetrotransposonsLTRLTR-Caulimovirus105315613315717+
scaffold828|size7559_LTR-Caulimovirus_626 RetrotransposonsLTRLTR-Caulimovirus391228618-
scaffold828|size7559_LTR-Caulimovirus_627 RetrotransposonsLTRLTR-Caulimovirus3916331023-
scaffold828|size7559_LTR-Caulimovirus_628 RetrotransposonsLTRLTR-Caulimovirus38810381425-
scaffold828|size7559_LTR-Caulimovirus_629 RetrotransposonsLTRLTR-Caulimovirus39118482238-
scaffold828|size7559_LTR-Caulimovirus_630 RetrotransposonsLTRLTR-Caulimovirus38722532639-
scaffold828|size7559_LTR-Caulimovirus_631 RetrotransposonsLTRLTR-Caulimovirus39126573047-
scaffold828|size7559_LTR-Caulimovirus_632 RetrotransposonsLTRLTR-Caulimovirus38730623448-
scaffold828|size7559_LTR-Caulimovirus_633 RetrotransposonsLTRLTR-Caulimovirus39134663856-
scaffold828|size7559_LTR-Caulimovirus_634 RetrotransposonsLTRLTR-Caulimovirus38738714257-
scaffold828|size7559_LTR-Caulimovirus_635 RetrotransposonsLTRLTR-Caulimovirus39142754665-
scaffold828|size7559_LTR-Caulimovirus_636 RetrotransposonsLTRLTR-Caulimovirus34546805024-
scaffold8|size4582595_LTR-Caulimovirus_637 RetrotransposonsLTRLTR-Caulimovirus28643704054370690-
scaffold92|size519399_LTR-Caulimovirus_638 RetrotransposonsLTRLTR-Caulimovirus91252636252726+
scaffold9|size3886705_LTR-Caulimovirus_639 RetrotransposonsLTRLTR-Caulimovirus112898506898617+
scaffold9|size3886705_LTR-Caulimovirus_640 RetrotransposonsLTRLTR-Caulimovirus12628513312851456+

< 28 29 30 31 32 > Total 32


Boechera retrofracta (v1.0)

ID:

scaffold7|size4355475_LTR-Caulimovirus_621

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

82

Start:

763991  

End:

764072

Strand:

+

>scaffold7|size4355475_LTR-Caulimovirus_621

ATCATCCACCTATAAATATGTGTACCTCTTTTTGTAATCCACAATTTACATCCACAAAGTAATATAATTCTCCCTCATGAGT

Boechera retrofracta (v1.0)

ID:

scaffold7|size4355475_LTR-Caulimovirus_622

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

90

Start:

764070  

End:

764159

Strand:

-

>scaffold7|size4355475_LTR-Caulimovirus_622

AGTGAGCTGGTCGCACTTTTCGTTTGCTTGTTGTAGCAACACTGGAGGCATTCAAGCATGATTCGTCTTTGTTGGTGTGGTAGTGACGTT

Boechera retrofracta (v1.0)

ID:

scaffold7|size4355475_LTR-Caulimovirus_623

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

84

Start:

764171  

End:

764254

Strand:

-

>scaffold7|size4355475_LTR-Caulimovirus_623

CGAGTGCATAGTATCTTTTTGTTGTTTGCTTTTCAAAGTGTTTTGCCAAATCTTTTTTCTTCGGGGAACAATATTTTACTGCAA

Boechera retrofracta (v1.0)

ID:

scaffold7|size4355475_LTR-Caulimovirus_624

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

174

Start:

1814826  

End:

1814999

Strand:

-

>scaffold7|size4355475_LTR-Caulimovirus_624

CAAATGAGAGACCTCAGACCTAAACATAATGACAAAGTCATATTTACAGACAAGAAAGAATTTAGATTAGAAAAACATACGTAGACACTAATTCTCAGTCATAGCTCAACCACTGTTAGAAATTTTCCCTAATGAAAGTTGCACTGATTGTCGTATTGTTTAGATCGGAGATTC

Boechera retrofracta (v1.0)

ID:

scaffold80|size432629_LTR-Caulimovirus_625

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

105

Start:

315613  

End:

315717

Strand:

+

>scaffold80|size432629_LTR-Caulimovirus_625

TGTCAGCTATATGTAAGCATGACGTCAACATTAGTAGAAATATCTAGAGTGTGTATGAGGTAAACGTTTACGTAAGCGACCTTATCCTCCCCTAGGTAAAAATGT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_626

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

228  

End:

618

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_626

TACTTTTTATAAATACAAAATTCTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATGTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTATCCTCTTATGGTGTCGACAGTTAGATTACATTGTTGCCTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCACTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_627

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

633  

End:

1023

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_627

TACTTTTTATAAATGCAAAATACTATTTTAAAATTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAACTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCGCTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_628

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

388

Start:

1038  

End:

1425

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_628

TACTTTTTATAAATGCAAAATACTATTTTAAAATTTGAAATTTACAAAGATTGTTTGAAAACAGTATCGAATAAAACTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTAAGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGTCAGCTAGTGGGTC

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_629

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

1848  

End:

2238

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_629

TACTTTTTATAAATACAAAATTCTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCGCTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_630

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

387

Start:

2253  

End:

2639

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_630

TACTTTTTATAAATGCAAAATACTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTACTTGGTAGTTTAAAAACTTACAAGGATTGTTAACGATAACAATTTTTGAAAACTTAAAGATTTTTAGAGAGAGAAGGTGGAGAGATTTTTAGAGAGAAAGTTACGTGAAAATCGCTCGTGCCTCCTTCGTTGGTAGAGTTCAGTATTTATAGGGGAAGCTGAGTGCTTGCTTGCGTCATTGTTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGCCGACAGTTTGATTACATTGTTGCTTACGTCCTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGTCTGCTAGTGGGTC

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_631

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

2657  

End:

3047

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_631

TACTTTTTATAAATACAAAATTCTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAACTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCGCTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_632

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

387

Start:

3062  

End:

3448

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_632

TACTTTTTATAAATGCAAAATACTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTACTTGGTAGTTTAAAAACTTACAAGGATTGTTAACGATAACAATTTTTGAAAACTTAAAGATTTTTAGAGAGAGAAGGTGGAGAGATTTTTAGAGAGAAAGTTACGTGAAAATCGCTCGTGCCTCCTTCGTTGGTAGAGTTCAGTATTTATAGGGGAAGCTGAGTGCTTGCTTGCGTCATTGTTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGCCGACAGTTTGATTACATTGTTGCTTACGTCCTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGTCTGCTAGTGGGTC

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_633

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

3466  

End:

3856

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_633

TACTTTTTATAAATACAAAATTCTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAACTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCGCTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_634

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

387

Start:

3871  

End:

4257

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_634

TACTTTTTATAAATGCAAAATACTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTACTTGGTAGTTTAAAAACTTACAAGGATTGTTAACGATAACAATTTTTGAAAACTTAAAGATTTTTAGAGAGAGAAGGTGGAGAGATTTTTAGAGAGAAAGTTACGTGAAAATCGCTCGTGCCTCCTTCGTTGGTAGAGTTCAGTATTTATAGGGGAAGCTGAGTGCTTGCTTGCGTCATTGTTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGCCGACAGTTTGATTACATTGTTGCTTACGTCCTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGTTCAGCTAGTGGGTC

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_635

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

391

Start:

4275  

End:

4665

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_635

TACTTTTTATAAATGCAAAATTCTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAACTTTTATTTGGTAGTTTAAGAACTTACAAGGATTGTTAAAGATAACAGTTTTTGAAAACTTAAAAATTTTTAGAGAGAGAAGGTTGGAGAGATTTTTAGAGAGAGAGTTGCGTGAAAATCGCTCGTGCTTCCTTCGTTGGTAGAGTTGAGTATTTATAGGCGAAACTGAGTGCTTGCTTGCGTCAATATTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGTCGACAGTTAGATGACATTGTTGCTTACGTCTTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGGCCCGCTAGTGGGTCTTT

Boechera retrofracta (v1.0)

ID:

scaffold828|size7559_LTR-Caulimovirus_636

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

345

Start:

4680  

End:

5024

Strand:

-

>scaffold828|size7559_LTR-Caulimovirus_636

TACTTTTTATAAATGCAAAATACTATTTTAAAACTTGAAATTTACAAAGATTGTTTGAAAACAGTATAGAATAAAGCTTTTACTTGGTAGTTTAAAAACTTACAAGGATTGTTAACGATAACAATTTTTGAAAACTTAAAGATTTTTAGACTCGCTCGTGCCTCCTTCGTTGGTAGAGTTCAGTATTTATAGGGGAAGCTGAGTGCTTGCTTGCGTCATTGTTTACATCAATATGTTGCTACGTGTTGTCCTCTTATGGTGCCGACAGTTTGATTACATTGTTGCTTACGTCCTTGCTACGTGTCGTCTCCTTATGGTGTCTTCTTGTGGTTCAGCTAATGGGTC

Boechera retrofracta (v1.0)

ID:

scaffold8|size4582595_LTR-Caulimovirus_637

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

286

Start:

4370405  

End:

4370690

Strand:

-

>scaffold8|size4582595_LTR-Caulimovirus_637

TTATAGATAAACAAAAGAGAGATCTCAGATCTATACGTATTGACAAAGTCGTGTCGACACACATGAGGGATTTCAGATAAACGGAGCATACGTAGGCGCTAACTTTCAGCCATGGCTGAACCACTGTTTAAAATTTCGCCTCATGAAAGCCGTAATGTATGTCGTATTGTCTAGATCACAGACTTTACAATACTTATCTAAACCTAATAATACTTTGATCGCTTACTTGTGTATGAAAGAGTGAAACAAAGTTTATGAAGATCTTTGAGCTCTAGAAAACTAGAGA

Boechera retrofracta (v1.0)

ID:

scaffold92|size519399_LTR-Caulimovirus_638

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

91

Start:

252636  

End:

252726

Strand:

+

>scaffold92|size519399_LTR-Caulimovirus_638

ACCCTTCGCTTATGACTCATTGTTACGGTTGATGTTCCAGGCCGCAAGTCCTCGGTGAAGGCAGTAAGACCGTTGGCAAGTTACCTTTATG

Boechera retrofracta (v1.0)

ID:

scaffold9|size3886705_LTR-Caulimovirus_639

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

112

Start:

898506  

End:

898617

Strand:

+

>scaffold9|size3886705_LTR-Caulimovirus_639

TCTATCCAAGATCCATTTGAATAAATAAATTAAAAAAAAAAAGGTAATTATGATGTATATATTTCGTATTTTTATCATCGTATATTCTAGTAGACTCTGTATATTATTTGTT

Boechera retrofracta (v1.0)

ID:

scaffold9|size3886705_LTR-Caulimovirus_640

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

126

Start:

2851331  

End:

2851456

Strand:

+

>scaffold9|size3886705_LTR-Caulimovirus_640

TTTTTAATAGTGGTTGAGTTATGACCAAAAATTACCTTCGATGCTTCTTTTACCTGATATCCCTCTTGTCTGTTAACACGACTTAGTCAATACGGTTTTATCGCGAAATATCTCCTTTATGTATCT