ID Class Order Superfamily Length Start End Strand View
Super_scaffold_48_1_2883341_LTR-Caulimovirus_721 RetrotransposonsLTRLTR-Caulimovirus86121318912132751+
Super_scaffold_48_1_2883341_LTR-Caulimovirus_722 RetrotransposonsLTRLTR-Caulimovirus262321330002135622+
Super_scaffold_62_144894_157958_LTR-Caulimovirus_723 RetrotransposonsLTRLTR-Caulimovirus26536403904+
Super_scaffold_67_371834_1779073_LTR-Caulimovirus_724 RetrotransposonsLTRLTR-Caulimovirus47512345701235044+
Super_scaffold_67_371834_1779073_LTR-Caulimovirus_725 RetrotransposonsLTRLTR-Caulimovirus107412367351237808+
Super_scaffold_67_371834_1779073_LTR-Caulimovirus_726 RetrotransposonsLTRLTR-Caulimovirus95112475951248545-
Super_scaffold_67_371834_1779073_LTR-Caulimovirus_727 RetrotransposonsLTRLTR-Caulimovirus68912549331255621-
Super_scaffold_75_LTR-Caulimovirus_728 RetrotransposonsLTRLTR-Caulimovirus97329304329400+
Super_scaffold_75_LTR-Caulimovirus_729 RetrotransposonsLTRLTR-Caulimovirus1484329455330938+
Super_scaffold_75_LTR-Caulimovirus_730 RetrotransposonsLTRLTR-Caulimovirus1616331145332760+
Super_scaffold_75_LTR-Caulimovirus_731 RetrotransposonsLTRLTR-Caulimovirus928340435341362+
Super_scaffold_76_LTR-Caulimovirus_732 RetrotransposonsLTRLTR-Caulimovirus169225702102571901-
Super_scaffold_93_1_189287_LTR-Caulimovirus_733 RetrotransposonsLTRLTR-Caulimovirus7633274133503-
Super_scaffold_93_1_189287_LTR-Caulimovirus_734 RetrotransposonsLTRLTR-Caulimovirus8053328134085+
Super_scaffold_93_1_189287_LTR-Caulimovirus_735 RetrotransposonsLTRLTR-Caulimovirus4583508035537+
Super_scaffold_93_1_189287_LTR-Caulimovirus_736 RetrotransposonsLTRLTR-Caulimovirus28773649739373+

< 33 34 35 36 37 > Total 37


Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_48_1_2883341_LTR-Caulimovirus_721

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

861

Start:

2131891  

End:

2132751

Strand:

+

>Super_scaffold_48_1_2883341_LTR-Caulimovirus_721

CTTCTNGTATCCAAATCAAGCTTCTCACAAAGTGATTCATCCTGTTGACTGGAACGACGAAGAAGCTGTGCTATTCCCAAACTGGGAAACTCGAATCACATGATTTGAAAGTGAAATAACTTTTTCTTGCCAACTCCTATGAGATATTCAACTTCCTGGTGATTCTCCATCACTTTATGTATCCAAATAAAGCTTCTGACAAAGTGATTAATTCTGGTTTGATTGGAACGACGAAAAAGCTGTGCTATTCCCAAACTGAAAAACTGGAATCACCTGATTTGAAAGTAGAATAACTTCTTCATCCCAACTCTTATGAGACTTATTAAACTTCCTGATGATTCTCCACCACTTTATGTATCCAAATCAAGCTTCTCACAAAGTATTTCATCCTGGTTTGATTGGAACAACGAAGAAGCTGTGATATTCCACAACCTGGAAACTGGAATCACCAGATTTGAAAGTGGGATAACTTCTTCATCCCAACTCCTATGAGATTTATTCAACTTCCTGGTGATTCTCGACCACTTTATCTGTCCAATTCAAGCTTCTCACAAAGTGATTCATCCTGGTTTGCATGGAACGACGAAGAAGCTGTCCTATTCCCAAACTGGGAAAATGGAATCACCTTATTTGAAAGTGGGAAAACTTCTTCATTCCAACTCCTATGAGGTTTATTCAAGTTCCTGGTGATTCTCCACCACTTTATGTATCCAAATCAAGCTTCTCAGAAAGTGATTCTTCCTGGTTTGATTGGAACGGAAGAAGCCGTGCTATTCCCAAACTAGGAAACTGGAATCACATGATTTGAAAGTGGATAACTTCTTCATCCCCAGTCTATGAGGATTTTATCAACATTTTCCT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_48_1_2883341_LTR-Caulimovirus_722

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2623

Start:

2133000  

End:

2135622

Strand:

+

>Super_scaffold_48_1_2883341_LTR-Caulimovirus_722

TTTCCTGGTGATTCTCCACCCCTTTATGTATCCAAATTAGGCTTCTTACAAAGTGATTCATCCTGGTTTGATTGGAACGACGAAGAAGATGTCCTACTCCCTAACTGGGAAACTGGAATCACCTGAATTGAAAGTGGGATAACTTCTTCATCCCAACTCCTTATGAGGATTAAAATTCAAACTTCCTGGTGATTCTCATACCCCTTTATGTATCCAAATCAAGGCATCTAACAAAGAGATTCTTCCTGTTTTGATTGAAACGACAAGAAGCATTTGCTAATTCCAAACATGGGAAACTGGAATTCAACCTGAATTTAAAAGTGGATAACTTCTTCTTGCCAAGTCCTATGAGATTATATTTAAACTTCCTGGTGATTTCTCTACCACTTTTATGTATCCCAAATCAAGCTTCTTACAAATTGTTATTCCTCCTGGATTGATTGAAACCAACAAAGAAAGCTTCCCGATTCCCAAACAGTGAAACTGGATATCCACCTGAATTAAAAGTGGGGAATAACTTCTTCATCCAACGTGCTATGAGATATATTCAACTCCTGGTTCATTCTTCACCACTTATGTATCCAAATCAAGCTTCTTACAAAGGTGATTCATCCTGGATTGATTGGAACGACCGAAGAATGCCCTGTGCTATTCCATAACTGTGAAACTGGAATCACCTGAATTGGAAGTGGAATAATTTCTTCATCCAACCTCCTATGAGATTTATTCAACTTCCTGTTCATTCTTCACCACTTTATGTATCCAAATCAAGCTTCTTACAAAGATCTTCATCCTGCTTTGACTGGAACGACGAAGAAGCTGTGCTATTCCCAAACTGGGAAACTCGAATCACATGATTTGAAAGTGAAATAACTTTTTCTTGCCAACTCCTATGAGATATTCAACTTCCTGGTGATTCTCCATCACTTTATGTATCCAAATAAAGCTTCTGACAAAGTGATTAATTCTGGTTTGATTGGAACGACGAAAAAGCTGTGCTATTCCCAAACTGAAAAACTGGAATCACCTGATTTGAAAGTAGAATAACTTCTTCATCCCAACTCTTATGAGACTTATTAAACTTCCTGATGATTCTCCACCACTTTATGTATCCAAATCAAGCTTCTCACAAAGTATTTCATCCTGGTTTGATTGGAACAACGAAGAAGCTGTGATATTCCACAACCTGGAAACTGGAATCACCAGATTTGAAAGTGGGATAACTTCTTCATCCCAACTCCTATGAGATTTATTCAACTTCCTGGTGATTCTCGACCACTTTATCTGTCCAATTCAAGCTTCTCACAAAGTGATTCATCCTGGTTTGCATGGAACGACGAAGAAGCTGTCCTATTCCCAAACTGGGAAAATGGAATCACCTTATTTGAAAGTGGGAAAACTTCTTCATTCCAACTCCTATGAGGTTTATTCAAGTTCCTGGTGATTCTCCACCACTTTATGTATCCAAATCAAGCTTCTCAGAAAGTGATTCTTCCTGGTTTGATTGGAACGGAAGAAGCCGTGCTATTCCCAAACTAGGAAACTGGAATCACATGATTTGAAAGTGGGATACCTTCTTCTTGCCACGTCCTATGAGATTTATTCAACTTCCTGGTGATTCTCCACCCCTTTATGTATCCAAATTAGGCTTCTTACAAAGTGATTCATCCTGGTTTGATTGGAACGACGAAGAAGATGTCCTACTCCCTAACTGGGAAACTGGAATCACCTGAATTGAAAGTGGGATAACTTCTTCATCCCAACTCTTATGAGATTTATTCAACTTCCTGGTGATTCTCTACCACTTTATGTATCCAAATCAAGCTTCTCACAAAGTGATTCATCCTGCTTTGATTGAAACGACAAAGAAGCTTTCCTATTCCCTAACAGGGAAACTGGAATCACCTGATTTAAAAGTGGGATAACTTCTTCATCCCAAGTGCTATGAGATATATCAAACTTCCCTGGTGATTCTCCCCCCCTTTATGTATCCAAAATTAGGCTTCTCACAAAGTTATTCATCCTGCCTTGATTGGAACGACGAAGAAGATGTGCTACTCCCTAACTGGGAAACTGGGAATCACCTGATTTGAAAGTGGGATAACTTCTTCATCCAACTCCTTATGAGATTTATTCAACTTCCTGTTCATTCTTTACCACTTTATGTATCCAAATCAAGCTTCTTACAAAAGATCATTCATCCCTGGTTTGATTTGAAAATGACAAAGAAGCTTGGCTATTCCCTAACAGTGAAACTGGAATCACCTGATTTTAAAAGTGGGACTAACTTCTTCATCCCAAGTGCTATGAGATATATTCAACTTCCTGGTGATTCTCCACCACTTTATGTATCCAAATCAAGCTTCTTACAAAGTTATTCATCCTGCATTGATTGGAACGACGAAGAAGCTGTCCTATTCCCTAACTGGGAAACTGGAATCACCTGAATTGAAAGTGGAATAACTTCTTCATCCAACCTCCTATGAGATTTATTCAACTTCCTGTTCATTCTTCACCACTTTATGTATCCAAATCAAGCTTCTTACAAAGATCTTCATCCTGCTTTGATTGGAACGACGAAGAAGCTGTCCTATTCCCAAACTGGGAAACTGGAATTAATTGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_62_144894_157958_LTR-Caulimovirus_723

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

265

Start:

3640  

End:

3904

Strand:

+

>Super_scaffold_62_144894_157958_LTR-Caulimovirus_723

CCACCACTTAATGTATCCAAATCAAACTGCTTACAAAGTGATTCAGGTTAATTTGATTAGAACGACGAAGAAGTTGTCTTATTCTCAAACTGGGAAACTGGAATCACCTGATTTGAAAGTGAGATAACTTCTTCTTCCCAACTTCAATGAGGTTTGTTCAACTTCCTGGTGATTCTCCACCACTTTATTTACCCAAATCAAGCTTCTTACAGAGTGATTCATCCTGGTTTGGTTGGAACGACAAAGAAGTTATCTTATTCCCAAA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_67_371834_1779073_LTR-Caulimovirus_724

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

475

Start:

1234570  

End:

1235044

Strand:

+

>Super_scaffold_67_371834_1779073_LTR-Caulimovirus_724

TCTTTCAAGATCCAACTCTGTTATTCTGAGATCCATCCAATGGAAAGATATAAATCTTCCAGATGAATGGGTCCTCGAGGGAGCTGTCCAACCAAAATTTCCTGCACCTCAAGAATCGATAGAACCAAATACACGTTTAAAACATATTGAACAATTTCATGATGGAAAAGTAAAACTATCATTTATTCGAAATAACCAGGATATGATTGATGCATATTTGTTAGGATCTTCTTCTAACATGTGTGAATCTTCCTCTAATCCAGAAACTATCGATTTAGGAAGAGTCTCACAATTAGGTCAAGATTTTACTAGAGAAGAAAAGACTATGAAGTTCCGTCCCCGGTTTTCAACCTCGGATATTCCAAATTTTGTTTTAAGAAATGTTAACTTTCAATCACAAATTCCAAAACCTGTTTACTCTGCGGAAAACGATCTTTCACAAAATGAATTTGTTTGAAAATCTGAGCCAACAAGT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_67_371834_1779073_LTR-Caulimovirus_725

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1074

Start:

1236735  

End:

1237808

Strand:

+

>Super_scaffold_67_371834_1779073_LTR-Caulimovirus_725

TTCACTTATGGAGAGTTGATTAGTATTGTTCACCAAGAAGATTTTAGGATATGTCAAGACCTGAAACTCCAAAACATCTTAAGTTGGAACTCAAAAGAACAAAAGTGGAATTAGGATCTTTCTGTAAACAATTTGAAATAGATCCCAATAAAGGTAGTAAATCTTGTGTAGGAGATTGCAAAAAAACAAGTATTCTAAAAATAAGCCTAGAAAACATTCTAGAAACCATAAGAGCTTTAGAAATCGTGAGAATTAATGGAAGAAACCCCAAAACAAATTTCCTTCAAAAGAAACCACAGCCAAAAAGCCCTTCTACAAAAGCTTTACTTGCTACAATTGCAATAAGAAAGGTCACACCTCAAAATTTTGTCGGTAAAATCGAAAAATCCAGGAGCTCAACCTCGGAGAAGAAATTACAAGTAAAATCTCTAATTTCTTACTAAATGATTCTTCTTCATCTTATGACTCTGATTCATCAATGGCTTCTGAAAAGGCCCTTTAGGTTGATGAACTAAATAGTTCATCTTCTGATTCAGAGTCCAATGAAAATAATATTTATGTTCTTACAAAAGATCAAGAATTGAAACTTGAAATACTAAATTCCATTTCTGATCCAAACCTAAAAAAAAATTCCTGGAAAAAATCCTTTCTTCTTTAAACGAGAAAGATCTACAAACACACAGAAAATTCTCAAAAATCCCATGTTTCAACTTCTTCTAAATCTTCTTCTGATCTCACCACCATTCTGAACCAAAGAAAGAAAGACACCTCAAAAACAACGATACAAGATCTTAGGACTGAAATTAAAGAAGTAAAAAATGATCTAAAAATCCTCAAAGAAAAACAAAAACGAGATTCTGAGTATTTTCACTCAATTATATCTTCTACCAAAGGTCATCATGATTCTAGTTCAAAAGAACAAGAAAGTGATAGCTTAAATAATGAAGATGTAAATCTCAAAGAACAAGTTCAATCTCTAGATATGGCCCCAAATAAGAGAAATAACTTCTCGAAAATCTAAAATTAGAGTTACTATTGTTTTTCTGAAAATTACAAAATTGATTCAATTGCTCT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_67_371834_1779073_LTR-Caulimovirus_726

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

951

Start:

1247595  

End:

1248545

Strand:

-

>Super_scaffold_67_371834_1779073_LTR-Caulimovirus_726

TTAAACAAAACTTAAAATAATTAAAAAGAAATTTGGACGGCTAGACCAGCCACTTAAACACAAATCATAATATTAAAACAAGGAAATGAAACAAGGAAAAATATAACTGAAACTTTATTTATTAAAAACTTACTTAAAAAGAGATTTTAGCAATGTTCTCGATTACAAGGATGGGAGAGGATGGTAAGAGAGGATATGGATGAAAGAGTAGGAGAATGAGAACTTGTTTTACAACTGAATCAAAGACTCCTTTATATAGGAGTTTACAAGGTGCAATCATACATAAAAAAAAAAATTTAAATAAATATAAAAATAAAGATAAAAGTGGCATTATGGATAATACCACTAGCAAAAGCTAGCTCCATTAAGCTCCATAATTGTTTGCTTTCAGCTGGAAGTGGACCTTGGTCTTCATGGCTACAGGAGATAGCACTTATTGATGTTTTTGGATTTTTCTCGGTATTGCGACAAGAGATCGTGGAAAATATTCGTAACAGTGTAACTGTATCCGACAGATTCGTAACAAGATATCTTCTTGATTTTGAGGAGATTTGTATTTCTTGTGGAGAGAGATCAAACTCTACTGTTTTCAAAAATTTCTTCATCGATATCCGGCACTTGAGATCCTGAATCACTCCCTGTAGTACAAGAGATTTGATCTGACATGGATGGTAGAAATTGTAAGGAGATTGCCTTAATTTCTTCTTCAGATTTTGCCCCTGCCAACATTGCTAACATTTTGGATTTTTGAGCCAAGAAAAAGGTTGTCTCCGGTGTTTGGTTTGGTGTTTGGTTAAGTGTTTGAATTTTTGAATTTTTTTCCTTTATCCAGGTAAGGATATTTGACGGATAAAGATTTTAGGGAATTTGTATTTATCCCACCACTTGACTATGAATCTTCTTTGGATAACACGGATTGGGTCTGAAGTAAATTCAAGGGTCCATGTAAAT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_67_371834_1779073_LTR-Caulimovirus_727

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

689

Start:

1254933  

End:

1255621

Strand:

-

>Super_scaffold_67_371834_1779073_LTR-Caulimovirus_727

CCTTTATAATAGGTTTATAAAATTCATAAAAAATTTAAATAAATATAAAAATAAAGATAAAAGTGGCATTATGGATAATACCACTAGCAAAAGCTAGCTCCATTAAGCTCCATAATTGTTTGCTTTCAGCTGGAAGTGGACCTTGGTCTTCATGGCTACAGGAGATAGCACTTATTGATGTTTTTGGATTTTTCTCGGTATTGCGACAAGAGATCGTGGAAAATATTCGTAACAGTGTAACTGTATCCGACAGATTCGTAACAAGATATCTTCTTGATTTTGAGGAGATTTGTATTTCTTGTGGAGAGAGATCAAACTCTACTGTTTTCAAAAATTTCTTCATCGATATCCGGCACTTGAGATCCTGAATCACTCCCTGTAGTACAAGAGATTTGATCTGACATGGATGGTAGAAATTGTAAGGAGATTGCCTTAATTTCTTCTTCATATTTTGCTCCTGCCAACATTGCTAACATTTTGGATTTTTGAGCCAAGAAAAAGGTTGTCTCCGGTGTTTGGTTTGGTGTTTGGTTAAGTGTTTGAATTTTTGAATTTTTTTCCTTTATCCAGGTAAGGATATTTGACGGATAAAGATTTTAGGGAATTTGTATTTATCCCACCACTTGACTATGAATCTTCTTTGGATAACACGGATTGGGTCTGAAGTAAATTCAAGGGTCCATGTAAAT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_75_LTR-Caulimovirus_728

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

97

Start:

329304  

End:

329400

Strand:

+

>Super_scaffold_75_LTR-Caulimovirus_728

TATGTAACACTAGAAGATTTAGAGAATCATTTCGGAAAAGGAATAAAAGGATTTAACGAAGGCCAACCAACAAGTATAATCAGAGTAAGAAGATAGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_75_LTR-Caulimovirus_729

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1484

Start:

329455  

End:

330938

Strand:

+

>Super_scaffold_75_LTR-Caulimovirus_729

AAAAAAGGGGGGAAGTTATCGACAAGAATAAAATGGAAGACCACATGGAAGAATTAAGAGAAATGTTAAAAAATATTACTCTAATAGATAACCCTCAACAACTTGAACAAAACGAAATAATAATTGATCACTCTTCTTCATCAGAAGACGAACCATCTATTCCTTTCCTAAACCCCTTAGAAGGAGAAGGAACAGGTAAACAAGAAATTATTGATCAAAAACCAACTATAAAATTTGACGACATTTACAAAAATAAACGAGGATATTTTAGATCTGAAACTGGAACGCTCGAAAAGTATCAACAATTTAAACCGAAACCAGTAAAATATAACGACTTCTTAGATCTTGATTGTGTTAATCACCAAGAAGGAAAAATAAGACTACACACTTGGGTCGCAGAACAAGAGATGCAGTTACAATTAAATGAAACAATTCAAAAAATGAATGCTGAAAATTATTTAAATCTTTTAATATATAATACAACTGGAATTGTGTTCACATACCTTGCTGGAATGAAAGATGCTAATAAAATTCAACTACAAAATTTTAGAGACCATCAAGAAATCCTTGTCACTGTAGTCGAGCAACTAAATAAACCATTTCTTGGTGGAATAAACCTATTAGGAAAAGAACAAACTAATGAAGATGAGGAAAAAATAGCAAAAGTAAGACATATATTAAACAATATAGAAATATGCAATATGAAATATTTAGATGAATTTATATGTCAATATGAAAAGAATTATTATGAATTACCTCACGATGATTATGTTAAATATATGGAAGTATTTATACAAAAACTACCATCTCCGTTTAATATAACATTACCTAGATTATTTAAAGAAAATATAGATAAAAAAGTAGTATCTGATTCCTTTGGAGGAATGATACGAACACTAAGGGAATACGTAAGAACCTTATGTATTCAAAGCCAAGAAATCAAAAGAGTAAAGAGAGCGTTTGAATTCAACTGTAACAACTATGATGATATACCTCAGAAATTTGGTTGCGAAGAACAAAGAAAACATAAAAAACGTAAATATAAAAGATATTATAAACATGAAAACAAAAAGTTTAGATTCAGGAATAAATACTTTAGACCAAGAAGAAGAAAATGGTATAAAAGAGAAAAAGGAAAAAATTACTATAAAGAAAAAGAAAAGAAAGCAATAAATAACGAAAAGTATTGTCCACAAGGCAAGAAAAATTGTAAATGCTGGCTATGCCATGAAATAGGGCATTATGCAAATGAATGTCCGAATAAAAAATCATATAAAAAAAGAAATAAAGTATCTTAATCAGATTAATTCAATTGGACTAACACCAATAGAATCATTAAACTCATCAGACAATGAATCATCATATTGTTATGAAATATTATCTTCATCTGAATCTGAAAGTGGATATAGTAGTTCAAATGAATCCGAATAGTACATTCATTCAGATACAAATAATGGATAACAAAAGAACAACAACTTTAGCAT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_75_LTR-Caulimovirus_730

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1616

Start:

331145  

End:

332760

Strand:

+

>Super_scaffold_75_LTR-Caulimovirus_730

TGAAAACTCTAGTTGTTGAAGGTTTAACCTTCTGAATAACAGTTTTTCACTTACAAAATATAAAACACAAATAAAAACACCCGAGACAAAACAAGATCAATCAAACCAGGCGACATTCACAACAACAAAAGTTCAACTATAATATTTCAGGTATGTCCAGATAGACGAAGAAACTCGAACATACGTAGCACAAATAACTTAGTTAGATTATATTAGTAGTATGATACAAATAATTTCTTTGAAAAGTGATATATTTAATCCAAGGATCAAAGATTAAAAACCTTGAAAAAGAAGCAAAAATAACATTAAAAGATGATCAAGATGTACATAGAAATAGACTATCAGAAATATTAAAGAGAAAAAATGTTTTATACTTTGGAAAATTTATACGAGAATTTCCCTTACCAATTGAATCAACTCGTGGTGAATTTACATTACCAGTAATTTCATCCGAAGCCATAAATGAAAAAAAATAGTAAAATGAAAGCAAGTCATCAGGAAAAAATATCCTATATACATATAGGAACAATCCAAATAATAGTAAGATCAACATTTAAGAAAAACATCGATTCTCCAATCAGGTTAGTGGTTAGTGACGATAGAATCCAAGATGAAAATGATAAAATTATTGGAATAGTAGATAGTAATTTAAAACATTCAGTTGTTAAATTTAACGTGGTCTGCCAGTATGGCATTCCATTAGCAACAAAAAACCTTAATAATTCAATCGGAATTATCTACGATTTCCAAAGACATGATCTTATGGAAGACGGCGATCATCCGCTATCGATTACTTATGCTGTTGGATACGCTCTATCCTCATCGGCTCATAGCATTGAATTTGCAAACAAGAATGATATATACCTTGAAAACCTGTTTAAAGAAACAACCACGGTTAAGTTTATACCAAAGAAAAATATAAGCGATCAAATAAATAAAACATATACCCCACAGATAAAATTCTTAGAACCAAGCTCTAGCGGATCAAGAATAGCTAGAAGCAAAACCTACAACGAAAGAAGAAAATCGATTAGTGACTTATATGAATTGCAGCAAATTAGTTATAAACTAAATAAATTAGATCGGACCATAACAAAGCTAGATAACAAACTATGAAAAAACAGAGCCAAAATCGGAGTCAAAACCGTAAGAAAAAATTGGTATCAGAGGCATCCAAGCCCAAAAAAGATAGTAATAAAATTGAGAAAATTAATGAACAAAAGCAAGAACAGATAAAATTATTATGCGCAGTCGTAAATAAAAATAAAGGACGAGCATTAGAATACTCAGAAGAGGAAGGAAAATTAATAAACGAAAAAATTCAAGAAATAAAAATAATAGAAAAATTGATAAATTTATAAAAATGGACGAATTTATAGATCAAACTATCGAATATCACCCAGAACTATATGCTATACCAGGAATACCATATAAAGAAAAAATTATACCTCTAGAAAGGAATATGATGGAAAATACAGAGTATACAATGGGAGCAAACATAAAGGAAGATCATAAAATGAGCCATTCGCTAAGGAATAATGATGCAATAGTAAATACCAAAACCAGAATAATTGTAGACCTATAGCAATAAACCCAAATGTAAAACAAACAGAATA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_75_LTR-Caulimovirus_731

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

928

Start:

340435  

End:

341362

Strand:

+

>Super_scaffold_75_LTR-Caulimovirus_731

AAAAATTGGTATCAGAGCCATCCAAGCCCAAAAAAGATAGCAATAAAATTGAGAAAATTAATGAACAAAAGCAAGAACAGATAAAATTATTATGCGCAGTCGTAAATAAAAATAAAGGACGAGCATTAGAATACTCAGAAGAGGAAGGAAAATTAATAAACGAAAAAATTCAAGAAATAAAAATAATAGAAAAATTGATAAATTTATAAAAATGGACGAATTTATAGATCAAACTATCGAATATCACCCAGAACTATATGCTATACCAGGAATACCATATAAAGAAAAAATTATACCTCTAGAAAGGAATATGATGGAAAATACAGAGTATACAATGGGAGCAAACATAAAGGAAGATCATAAAATGAGCCATTCGCTAAGAATAATATGCGGAATATTAAATAACCAAACCGAAATAATTAGTAGTATAGCAATAAACCAAATTAAAACAAACAGAATATTGCAAGAAAAACTAGATAATATTATAAATTCAGTTAAAGACATAAAAATTTTACAAAATGGTATTTCTGAAATTAGAAAGAATATAGAAATGTTAGATGAACTAGACAAACTACAAGGATTAGATGACATATTAATAACAGTAAAAAATTTAATGAAAACCACTGATAGATTAATTGAAAAACTATGACAGAAAAACTTGGAGATCAGATAAAACTAATATTGGAAAAAATACAAAAAATAGAAGAAAAACATAATAATGATTTAGAACATTTAAAACAACAAAATAAAGAACTTCAAGAAAACATAATAGATTACAAACAATTAAATAGTATCCAATTAGAAAAAATAAAAGAACTAGAAAATAACAAGTGTGTAACACTAGAAGATTTAGAGAATCATTTCGGAAATAGAATAAAAGGATTTAACGAAGGCCAACCAACAAGTATAATCAGAGTAAGAAGATAGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_76_LTR-Caulimovirus_732

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1692

Start:

2570210  

End:

2571901

Strand:

-

>Super_scaffold_76_LTR-Caulimovirus_732

CCACTTTCAAATCAGGTGATTCCAGTTTCGCAGTATTGGAATAGGACAGCTTCTGTGTCGTTCCAATCAAACCAGGATGAATCACTTTGTAAGAAGCTTGATTTGGATACATAAAGTGGTGGAGAATCACCAGGAAGCTGAATAAGTCTCATAGGAGCTCGGATGAAGAAGTTATCCGACTTTCAAATGAGGTGATTCCAGTGTGGGAAATAGGACAGATTCTGCGTCGTTTCAATCAAACCAGGATGAATCACTCTGTAAGAAGCTTGATTTGGATATATAAAGTGGTGGAGAATCACAAGGAAGTTGAATAAATCTCATAGGAGCTGGGATAAAGAAGTTATCCCACTTTCAAATCAGGTGATTCCAGTTTCGCAGTTTGGGAATAGGTCAGCTTCTGTGTCGTTCCAATCAAACTAGGCTGAATCACTTTGTAAGAAGCTTGATTTGGATACACAAAGTGGTTTAGAATCACTAGGAAGTTGAATAAATCTCATAGGAGCTGGGATGAAGAAGTTATCCCACTTTCAAATCAGGTGATTCCAATTTCGCAGTTTGGGAATAGGACAACTTCTGTGTCGTTCCAATCAAACCAGGATGAATCACTTTTTAAGAAGATTGATTTGGATACATAAAGTTGTGGAGAATCACCAGGAAGTTGAATAAATCTCAAATAGGATCTGGGATGAAGAAGTTGGATCCCACTTTCAAATCAGGTGATTCCAGTTTTCCAGTTTGGGAGTTGGACAGCTTCTGTGTCGTTCCAATCAAACCAGGATGAATCACTTTGTAAGAAGCTTGATTTGGATACATAAAATGGTGGAGAATCACCAGGAAGCTGAATAAGTCTCATAGGAGCTCGGATGAAGAAGTTATCGACTTTCAAATGAGGTGATTCCAGTTTGGGAATAGGTCAGCTTCTGTGTCGTTCCAATCAAACTAGGATGAATCACTTTGTAAGAACCATGATTTGGATACATAAAGTGGTGGAGAATCACCATGAAGTTGAATAAATCTCATAGGAGCTGGGTTGAAGAAGTTATCCCACTTTCAAATCAGGTGATTCCAGTTTTGCAGTTTGGGAATAGGACATCTTCTGTGTCGTTCCAATCAAACCAGGATGAATCACTTTGTAATAATCTTGATTTGGATACATAAAGTGGTGGAGAATCACCAGGAAGTTGAATAATTCTCATAGGAGTTGGGATGAAGAAGTTATCCCACTTTCAAATCAGGTGATTCCAGTTTCGCAGTTTGGGAATAGGACAGCTACTTCATCGTTCCAATCAAACCAGGATGAATCACTTTGTAAGAAGCTTGATTTGGATACATAAAGTGGTGGAGAATCATCAGGAAGTTTATTAAATCTCATAGGAGTTGGGACGAAGAAGTTATCCCACTTTCAAATCAGGTTATTCCAGTTTCGCAGTTTGGGAATAGGACAGCTTTTTGGTCGTTCCAATCAAACCAGGATGAATCACTTTGTAAGAAGCTTGATTTGGATACATAAAGTGGTGGAGAATCACCAGGAAGTTGAATAAATTTTATAGGAGTTGGGATGAAGAAGTTATCCCACTTTCAAATCAGGTGATTCCAGTTTCACAGTTTGGAAATAGGACAGATTCTGTGTCGTTCCAATCAAACCAGGATGAATCACTTTTTAAGAAGCTTGATTTGGATACATAAAGTGGT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_93_1_189287_LTR-Caulimovirus_733

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

763

Start:

32741  

End:

33503

Strand:

-

>Super_scaffold_93_1_189287_LTR-Caulimovirus_733

TTCCACTTTCAAATTAGGTGATCCCAGTTTTCATGTTTGGGAATATGACTACTTCCTCATCATTCTAATCAAACGAGGATGAATGACGTTGTAAGAAGCTGTATTTGGATACGTAATGTAGTGGAGAGTCACCAGGAAGTGGAATAAATCTTATAGGAGTTAGGATGAAGAAGTTATCCCACTTTCAAATCAGGTGATCCCAGATTTCCTGTTTGGGAATATGACAACTTCCTCGTCATTCTAATCAAACAAGGATGAATCGCGATGTAAGAAGCTGTATTTTGATACATAAAGTAGTGGAGAATCACCAGGAAGTAGAATACATTTCATAAGATTTAAGATGAAGAAGTTATCCTAATTTCAAATCATGTGAACCCAGTTTTTCTGTTTTTTGGGAATATGACAACTTCCTCATCATTCTAATCAAACGAGGATGAATCACAATGTAAGAAGTTTTTTTTTGGATACATAAAGTAGTGGAGAATAACAGTAGTAGACTTAGGTTCACCTGATTTGAAAGTGGGATAACTTCTTCATCCTAATTTGGATCTCCTGATTTGAAAGTGGGATAACTCCTTCATCCTAACTCCTATGAGTTTATTCCACTTTATGGTGATTTTGCACTACTTTATGTATCCAAATACATCTTCTTACATCGTGATTCATCCTGGTTTAATTAGAATAACTGGGATCACCTAATTTGAAAATGGGATAACTGCGTCATCCTAAATCCTATGAGATTTATTCCACTTCATGGTGATTC

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_93_1_189287_LTR-Caulimovirus_734

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

805

Start:

33281  

End:

34085

Strand:

+

>Super_scaffold_93_1_189287_LTR-Caulimovirus_734

AATTTGGATCTCCTGATTTGAAAGTGGGATAACTCCTTCATCCTAACTCCTATGAGTTTATTCCACTTTATGGTGATTTTGCACTACTTTATGTATCCAAATACATCTTCTTACATCGTGATTCATCCTGGTTTAATTAGAATAACTGGGATCACCTAATTTGAAAATGGGATAACTGCGTCATCCTAAATCCTATGAGATTTATTCCACTTCATGGTGATTCTGCACTACTTTATGTATGAAAATCAACTTCTTATATCGCGATTCATCCTGGTTTGATTAGAATGACGGGGAAGTTTTCATATTCCCAAACATGAAAACTGGAATCACCTGATTTGAAAGTGAGATAACTTCTTCATCCTAACTCCTATGAGATTTATTCCACTTCCTGGTTTTTCTCCACTACTTTATGTATCCAAATAAAGCTTTCTTACATCGCGATTCATCCTGGTTTGATTAGAATAACGAGGAAGTTGTCATATTCCCAAATAGGAAAACTGGGATCACCTGATTTTAAAGTGGGATAACTTCTTCGTCCTAACTCATATGATATTTATTTAACTTCCTGGTGATTCTCCAGTACTTTAGATATCCAAATACAACTTCTTACATCGCGATTCATCTTGGTTTTAATAGAATGACGAGGAATTTGTCATATTACCAAAAAGGAAAACTTGGATCACTTGATTTGAAATTGTGATAACTTCTTCATCTTAACTCATATGAGATTTATTCAATTTCCTGGTGATTATCCCCTACTTTATGTATCCAAATACAACTTTTTGCATCGTGATTCATCCTGTTT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_93_1_189287_LTR-Caulimovirus_735

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

458

Start:

35080  

End:

35537

Strand:

+

>Super_scaffold_93_1_189287_LTR-Caulimovirus_735

ATAACTTCTTCATCCTAACTCCAATGAGAATTATTCCACTTCCTGGTGATTCTCCACTACTTTATGTATCCAAATAAAGCTTCTTACATCGCTATTCATCCTGGTTTGATTAGAATAACGAGGAAGCTGTCATATTCCCAAATAGCAAAACTGGGATCACATGATTTTAAAGTGGGATAACTTCTTCATCCTAACTCATATGACATTTATTTAACTTCCTAGTGATTCTGCAGTACTTTAGGTATCCAAATACAGCTTTTTACATCGCGATTCATCTTGGTTTTAATAGAATGACGAGGAAGTTGTCATATTACCAAAAAGGAAAACTTGGATCACCTGATTTGAAAGTGGGATAACTTCTTCATCTTAACGCATATGAGATTTATTCAACTTCCTGGTGATTCTCCCATACTATGTGTATCCAAATACAACTTTTTGCATCGTGATTCATCCTGTTT

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_93_1_189287_LTR-Caulimovirus_736

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

2877

Start:

36497  

End:

39373

Strand:

+

>Super_scaffold_93_1_189287_LTR-Caulimovirus_736

ATAACTTCTTCATCCTGACTCCAATGACAATTATTCCACTTCCTGGTGATTCTCCACTACTTTTTGTATCCAAATACAACTTCTTACATCGCGATTCATTTTCTTTTGATTAGAGGGACGAGGAAGTTGTCATATTCCCAAACAGGAAACTGAGATCACCTGATTTGAAAGTGGGATGACTTCTTCATCCTAACTCTTATGAGATTTATTTCACTTCCTGGTTATTCTCCACTACTTTATGTATTCAAATACAGTTCTTACATAGCGATTCATCCTGGTTTAATTAGAATGACAAGGAAGTTGTTATATTCCCAAACAGGAAAACTGAGATCACCTGATTTGAAAGTGGAATAACTACTTCATCCTAACTACTATGAGATTTAATCAACTTCCTGTTGATTTTCCAGTACTTTATGTATCCAAATACTCCTTCTTGCATCGCAATTCATCCTGGTTTGATTAGAATGACAAAGAAGTTGTCATATCCCAAACAAGAAAACTACGATCACCTGATTGAAAGTTGGATAACTTCTTCATCGTAACTCCTATGAGATTTAGTCCACTTTCATGTGATTGTCAACTATATTATACAGCTTCATACATCACGATTAGTCATGGTTTGATTAGAATGACGAATAAGTTGTCATATTCCCTAATAGGAAAACTGGGATAACCCGAATTTCAAGTGGGATAACTTCTTCAACCTTACTCCTATGAGATTTATTTCACTTTCTGGTGATTCTCCACTACTTATTATATCCAAATACAGATTCTTACATCACAATTCATCCTAGTTTGATTAGAATGACAAATAAGTTGTCATATTCTCAAATAGGAACACTGGGATCACCCGAATTTCAAGTGGGATAACTTCTTCAACCTTACTCCTATTAGATATATTCAAATTCCTGGTGATTCTCCTCTACTTTATGTATCCAAATACATATTCTTACATCACGATTCATCCTGGTTTGATTAGAATGACGAAGAAGTTGTCATATTCCCAAACAAGAAAACTGTGATCACCTGATTTGAAAGTGGGATAACTTCTTCATCCTAACTCCTATGAGATTTATTCCACTTCATCCAGATTCAGCTTCTTACAACTCGATTCATCCTGGTTTGATTAGTAGAATGACAAGGAAGTTATCATATTCCCAAACAGGAAACCTGGGATCATCCGATTTGAAAGTGGGATAACTTCTTCATCCTAAATCCTATGAGATTTATTCCACTTCCTAGTGATTCTCCAGTACTTTAGGTATCCAAATACAGATTTCTACATTGCGATTCGTTCTGGTTTGAATAGAATGACGAGAAAGTTTTCGTATTACCAAACAGGAAAACTTTAGATCACATGATTTGAAAGTGGGATAACTTCTTCATCTTCACTCCTACGAGATTTATTCAACTTCCTGGTGATTCTCCAGTACTTTATGTATCTAAATACAGCTTCTTGCGTCACGATTCATCTTGGTTTGATTAGAATGACGACGAAGTTGTCATATCCCAAACAAGAAAACTGGGATCACCTGATTTGAAAGTGGGATAACTTCTTCATCGTAATTCCTATAAGATTTATTCCACTTTCATGTGATTGTCCATTATATTATGTTTCCAAATAAAACGTCGTACATCGCGATTCATCCTGGTTTAATTAGAATGACAAAGAAGTTGTCATAATCTCAAACAGGAAAACTCGGATAACTTGATTTGAAAGTGGGATAACTTCTTCATCCTAAATCCTATGATATTTATTCCACTTCCTAGTTATTCTTCACTACTTTATGTATCCAACTAGAGCTCCTTACATCGTGATTCATGCTGGTTTGATTAGAACGACAAGGAAGTTGTCATATTTCCAAATAGGAAAACTTGGATCACCTGATTGGAAAGTGGGATAACTGCTTCATCCTAACTCCTATGAGATTTATTCTACTTTCTGGTTATTCTGCACTACTTTATGTATGCAAATCAACTTCTTATATCGTGATTCGTCCTGGTTGCTTAGAATGACGGGGAAGTTTTCATATTCCCAAACACGAAAACTGGGATCACCTGATTTGAAAGTGAGATAACTTCTTCATCCTAACTCCTATGAGGTTTATTGCACTTCTTGGTTTTTCTCCACTACTTTATGTATCCAAATAAAGCTTCTTACATCGCGATTCATCCTTGTTTGATTAGAATAACGAGAAAGTTATCATATTCCCAAATAGGAAAACTGGGATCACCCAATTTAAAAGTGGGATAACTTCTTCATCCTAACTCCTATTAGATTAGTTCAACTTTCTGGTGATTCTCCACTACTTTATGTATCCAAATTTAACTTCTTACATCGCGATTCATTCTTGTTTGATTAGAATGATGAGGAGGTTTTCATATTCCTAAAAAATTGGGATCACGTGATTTGAAAGTGGGATAACTTCTTCATCCTAACGCCTATGAGATTTATTCTACTTCCTGGTGATTCTCCACTACTTTTTGTATCAAAATACAGCTTCTTACATATCGATTGATCTTGGTTTCATTAGAATGACGAGGAAGTTATCATATCCCAAACATGAAACTCGGATCACCTGATTTGAAAGTGGGATAACTTCTTCATTCTAACTCCTATGATATTTATTCAACTTCCTGGTGATTCTCCAGTACTTTAGGTATCCAAATACAGCTTCTTACATCACGATCCATATTTGTTTGAATAGAATGACGAGGAAGTTGTCATATTACCAAACAAGAAAACTTGGATCACCTGATTTGAAAGTGGGATAACTTCTTCATCCTAACTCATATGAGATTTATTCAAATTCCTGGTGATTCTCCAGTACTTTATGTATCCAAATACAGCTTCTTGCATTGCGATTCATCCTGGTT