TBGR-Browse-Bju-LINE.LINE

ID	Class	Order	Superfamily	Length	Start	End	Strand
Contig371_150000_589424_59539_439425_LINE_221	Retrotransposons	LINE	LINE	109	125723	125831	+
Contig3725_LINE_222	Retrotransposons	LINE	LINE	109	93958	94066	-
Contig444_592386_2116916_1449544_1482649_LINE_223	Retrotransposons	LINE	LINE	96	6295	6390	+
Contig444_592386_2116916_1449544_1482649_LINE_224	Retrotransposons	LINE	LINE	96	21588	21683	+
Contig6762_LINE_225	Retrotransposons	LINE	LINE	103	6024	6126	-
Contig7191_LINE_226	Retrotransposons	LINE	LINE	83	50867	50949	+
Contig8368_LINE_227	Retrotransposons	LINE	LINE	112	3187	3298	-
Contig94_LINE_228	Retrotransposons	LINE	LINE	83	483671	483753	-
Super_scaffold_103_799750_918515_LINE_229	Retrotransposons	LINE	LINE	92	1233	1324	+
Super_scaffold_103_799750_918515_LINE_230	Retrotransposons	LINE	LINE	92	21238	21329	+
Super_scaffold_109_1_1694999_1_127310_LINE_231	Retrotransposons	LINE	LINE	94	16013	16106	+
Super_scaffold_144_1249783_3420924_LINE_232	Retrotransposons	LINE	LINE	119	73712	73830	-
Super_scaffold_154_3079531_3254456_LINE_233	Retrotransposons	LINE	LINE	83	126757	126839	+
Rename16_LINE_234	Retrotransposons	LINE	LINE	86	102839	102924	+
Super_scaffold_28_1_2326914_1_464645_LINE_235	Retrotransposons	LINE	LINE	85	234168	234252	-
Super_scaffold_28_1_2326914_1_464645_LINE_236	Retrotransposons	LINE	LINE	86	329860	329945	-
Super_scaffold_35_90667_884944_LINE_237	Retrotransposons	LINE	LINE	337	741325	741661	-
Super_scaffold_58_LINE_238	Retrotransposons	LINE	LINE	86	916879	916964	+

Brassica juncea (Tumida_V1.5)

ID:

Contig371_150000_589424_59539_439425_LINE_221

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

109

Start:

125723

End:

125831

Strand:

+

>Contig371_150000_589424_59539_439425_LINE_221

GTGTTTAGTCTTTTATTTTTCTTTGATCTGCTTCTTGTAGTCTTTGTACTTCTGTCAAAAATTGAAAATTGGTAATAATATCTTTACATTTTTACCAAAAAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Contig3725_LINE_222

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

109

Start:

93958

End:

94066

Strand:

-

>Contig3725_LINE_222

TTTTTTTTTTGGTAAAATGTTAAGATTTCATTACCAGATTTTAATTTTTTACAGACTTGACAGGGATAACTAGTAGCAGATTACATAATGAAACTAACAGAAACTCAAA

Brassica juncea (Tumida_V1.5)

ID:

Contig444_592386_2116916_1449544_1482649_LINE_223

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

96

Start:

6295

End:

6390

Strand:

+

>Contig444_592386_2116916_1449544_1482649_LINE_223

TAGTTTATTTTTCTGCTACTTGTATCTGTATAACTTCTGTCAAAAACTTCTGGAAATTGGTATAAAATCTTAACATTTTTTACCCAAAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Contig444_592386_2116916_1449544_1482649_LINE_224

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

96

Start:

21588

End:

21683

Strand:

+

>Contig444_592386_2116916_1449544_1482649_LINE_224

TAGTTTATTTTTCTGCTACTTGTATCTGTATAACTTCTGTCAAAAACTTCTGGAAATTGGTATAAAATCTTAACATTTTTTACCCAAAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Contig6762_LINE_225

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

103

Start:

6024

End:

6126

Strand:

-

>Contig6762_LINE_225

TTTTTTTTTTTGGTAAAATATTAAATTATATACCAAATTTTTAATTGTGACAGAAATTACAGTGAAAACAAGTAGCGGATTACAGAAATTAAACTAAACACAA

Brassica juncea (Tumida_V1.5)

ID:

Contig7191_LINE_226

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

83

Start:

50867

End:

50949

Strand:

+

>Contig7191_LINE_226

TCCGCTACTTGTCTTCTTCGTTCTTCTGTAAAAAATTAAAAATTTGGTATAATAAATTTAACATTTTACCAAAAAAAAAAAGA

Brassica juncea (Tumida_V1.5)

ID:

Contig8368_LINE_227

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

112

Start:

3187

End:

3298

Strand:

-

>Contig8368_LINE_227

TTTTTTTTTTTTTGGTAAAAATGTAAAGATATTATTACCAAGCTTTTAAATTTTCGACAGAATTACAGAGAATAACAAGAAACGGAAAAAGAAAAAAAAAATCTAAACACAA

Brassica juncea (Tumida_V1.5)

ID:

Contig94_LINE_228

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

83

Start:

483671

End:

483753

Strand:

-

>Contig94_LINE_228

TTTTTTTTTTCTTGGTAAAAATGTTAAGATTCATTACCAGGTTTTGAAATTTTTTACAGAACAACATAGAAACCAAGAGCAGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_103_799750_918515_LINE_229

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

92

Start:

1233

End:

1324

Strand:

+

>Super_scaffold_103_799750_918515_LINE_229

TAGTTTCATTTAATCTGCTTCTTGTCATCTTTGTATTTATGTCAAAAACTGAAAATTTGGTATAATAATCTTAACATCTTACCAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_103_799750_918515_LINE_230

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

92

Start:

21238

End:

21329

Strand:

+

>Super_scaffold_103_799750_918515_LINE_230

TAGTTTCATTTAATCTGCTTCTTGTCATCTTTGTATTTATGTCAAAAACTGAAAATTTGGTATAATAATCTTAACATCTTACCAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_109_1_1694999_1_127310_LINE_231

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

94

Start:

16013

End:

16106

Strand:

+

>Super_scaffold_109_1_1694999_1_127310_LINE_231

TGTGTTGTTCTTCTCCGCTACTTGTATCCTTCGGTAACTTCTGTAAAAAATTCAAAATAATAATACAATCTTAATATGTTTGCCAAAAATAAAA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_144_1249783_3420924_LINE_232

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

119

Start:

73712

End:

73830

Strand:

-

>Super_scaffold_144_1249783_3420924_LINE_232

TTTTTTTTTTTTGGTAAAAATGTTAAAATTTATTACCATTTTCTTTTTTTGACAGAACTACATAGAAACATAGAAACATAGAACAGAAGATGCAAAAATTAAAACTAAACACCTACTCA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_154_3079531_3254456_LINE_233

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

83

Start:

126757

End:

126839

Strand:

+

>Super_scaffold_154_3079531_3254456_LINE_233

AATCTGTTCCTTGTCTGTCTCTGTACCTCTGTCTCAAACTCAGAAAATGGTAATAAACTGAACATTTTTACCAAAAAAAAAAA

Brassica juncea (Tumida_V1.5)

ID:

Rename16_LINE_234

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

86

Start:

102839

End:

102924

Strand:

+

>Rename16_LINE_234

TAATCCGCTACTAGTTGTCTTTGTAATTTCTGTCACAAACTTGAAAACTTGGTATAATATTTAACATTTTACCAAAAAAAANAAAA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_28_1_2326914_1_464645_LINE_235

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

85

Start:

234168

End:

234252

Strand:

-

>Super_scaffold_28_1_2326914_1_464645_LINE_235

TTTCTTTTTTTTTGGTAAAAATGTAAAGATTATTATTACCAATTTTTCAGTTTTTGACAAAAGTACAGTGACAACAAGAAGCGGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_28_1_2326914_1_464645_LINE_236

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

86

Start:

329860

End:

329945

Strand:

-

>Super_scaffold_28_1_2326914_1_464645_LINE_236

TTTTTTTTTTTTTGGTAAAAATGTAAAGATATTATTACCAAGCTTTTAAATTTTCGACAGAATTACAGAGAATAACAAGAAACGGA

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_35_90667_884944_LINE_237

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

337

Start:

741325

End:

741661

Strand:

-

>Super_scaffold_35_90667_884944_LINE_237

TTGGTAAATTATTAAATTTTATAACAATTTTTAAATATTTGACAAAATATACAGAGAAAATAAAGAAACAGAAAAACTAAAAACTACAATAAAGACTAAAGCTACAAAGGAAAACAAGCAAAAGCAACAAACAAAAAACACCTCAAAATAAATTAAGGGGATCATGGATAATAAAGCACCAATTCCGAGTATAGAACTCGAACATTTGTAAAGTTGCCGCAGATCCAAAGAACTGGAATCCTCATCTTTGTTGCCACGAGCTCCTCCTTCCGAGACCTGCCCTCAAACGTCGCAAGTGAGAAGAGCCTATAGCTTCTCCAAGAACTATGCAAAAACG

Brassica juncea (Tumida_V1.5)

ID:

Super_scaffold_58_LINE_238

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE

Length:

86

Start:

916879

End:

916964

Strand:

+

>Super_scaffold_58_LINE_238

TGATTTAATCTGCTACTAATATCTGTGTATCTTCTGTCAAAAACTGGAAAATGGGTATAAATCTTAACATTTTACCAAAAAAAAAA