ID Class Order Superfamily Length Start End Strand View
Contig74_LTR-Cassandra_3261 RetrotransposonsLTRLTR-Cassandra34820143502014697-
Contig74_LTR-Cassandra_3262 RetrotransposonsLTRLTR-Cassandra33020148032015132-
Contig74_LTR-Cassandra_3263 RetrotransposonsLTRLTR-Cassandra33120152362015566-
Contig74_LTR-Cassandra_3264 RetrotransposonsLTRLTR-Cassandra19920720282072226+
Contig804_LTR-Cassandra_3265 RetrotransposonsLTRLTR-Cassandra343218906219248+
Contig866_LTR-Cassandra_3266 RetrotransposonsLTRLTR-Cassandra265220752221016-
Contig906_LTR-Cassandra_3267 RetrotransposonsLTRLTR-Cassandra3258752087844-
Contig906_LTR-Cassandra_3268 RetrotransposonsLTRLTR-Cassandra3168794588260-
Contig906_LTR-Cassandra_3269 RetrotransposonsLTRLTR-Cassandra3058835388657-
Contig906_LTR-Cassandra_3270 RetrotransposonsLTRLTR-Cassandra2909148191770-
Contig906_LTR-Cassandra_3271 RetrotransposonsLTRLTR-Cassandra1019180091900-
Contig906_LTR-Cassandra_3272 RetrotransposonsLTRLTR-Cassandra839212192203-
Contig946_LTR-Cassandra_3273 RetrotransposonsLTRLTR-Cassandra3287145871785-
Contig946_LTR-Cassandra_3274 RetrotransposonsLTRLTR-Cassandra3167191572230-
Contig946_LTR-Cassandra_3275 RetrotransposonsLTRLTR-Cassandra3209067390992-
Contig946_LTR-Cassandra_3276 RetrotransposonsLTRLTR-Cassandra3019111591415-
Contig961_LTR-Cassandra_3277 RetrotransposonsLTRLTR-Cassandra12851065233-
Contig973_LTR-Cassandra_3278 RetrotransposonsLTRLTR-Cassandra339205969206307+
Contig973_LTR-Cassandra_3279 RetrotransposonsLTRLTR-Cassandra348206416206763+

< 160 161 162 163 164 > Total 164


Brassica carinata (v1.0)

ID:

Contig74_LTR-Cassandra_3261

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

348

Start:

2014350  

End:

2014697

Strand:

-

>Contig74_LTR-Cassandra_3261

TATAACACCCCGACCCGCCCACGACTAATGGGCCACCCACGCCCGCTCTCTCGGCCCGTGGACCCCATCCCATTCGACGGTCGGTCGTTAAATTCCGAAGGCTCGAAATCATCGTTTACTGACCCTGCAATCACCACCTGACCTTTCCCCATGCTTTGGCCTCACTCGCACGATATCGCGAATCACTTCCCGATAGGTCACCCATCCTTCCACTACTCCAGCTCAAGCACGCTTAACTCTAGAGTTCTTTCAGGATGTGCTCCGGAAAAGGTAAGTCAACTTTGGTGACATAGGTAGCCAAATCAATTCTCTTAAGCCTTTCCACATATCACAACTCGGGATGTTACA

Brassica carinata (v1.0)

ID:

Contig74_LTR-Cassandra_3262

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

330

Start:

2014803  

End:

2015132

Strand:

-

>Contig74_LTR-Cassandra_3262

TATAACGCCCCGACCGCCCACGGCTAATGGGCCACCCACGCCCGCTCTCTCGGCCCGTGGACCCCATCCCATCCGACGGTCGGTCGTTAAATTCGAAGGCTCGAAATCATCGTTTACTGACCCTGCAATCACCACGACCTTTCCCCATGCTTTGGCCTCACTCGCGACGATATCGCGAATCATTTCGATAGATCACCCATCATTCCACTACTCCAGCTCAAGCACGCTTAACTCTAGAGTTCTTTCAGGATGTGCTCCGGAAAAGGTAAGTCAACTTTGGTGACATAGGTAGCCAAATCAATTCTCTTAAGCCTTTCCACATATCACAAC

Brassica carinata (v1.0)

ID:

Contig74_LTR-Cassandra_3263

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

331

Start:

2015236  

End:

2015566

Strand:

-

>Contig74_LTR-Cassandra_3263

TATAACGCCCGACCGCCCACGGCTAATGGGCCACCCACGCCGCTTCTCGCCCGTGGACCCCATCCCATCCGGACGGTCGGTCGTTAAATTCCGAAGGCTCGAAATCATCGTCTACTGACCCTGCAATCACCACCTGACCTTTCCCCATGCTTTGGCCTCACTCGCACGATATCGCGAATCATTTCCCGATAGATCACCCATCATTCCACTACTCCAGCTCAAGCACGCTTAACTCTAGAGTTCTTTCAGGATGTGCTCCGGAAAAGGTAAGTCAACTTTGGTGACATAGGTAGCCAAATCAATTCTTTTAAGCCTTTCCACATATCACAAC

Brassica carinata (v1.0)

ID:

Contig74_LTR-Cassandra_3264

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

199

Start:

2072028  

End:

2072226

Strand:

+

>Contig74_LTR-Cassandra_3264

GTAACCTATCGGAAAGTGATTCACGATGTCGTGTGAGTGAAGTTAAAACACAGAAAAATGTCATGTGGTGATTGTATGATCAATAAACAAGACTTTCGAACTTTCAAAAAATTAATGCACCGCCTGTCGCACACAATGAGCCCACGAACCTAGTAAAGACGTGAAAGATTCATTAACTATGAACGGTCAGAACATTACA

Brassica carinata (v1.0)

ID:

Contig804_LTR-Cassandra_3265

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

343

Start:

218906  

End:

219248

Strand:

+

>Contig804_LTR-Cassandra_3265

TGTAACATCCGGGTTGTGATATGTGGAGCGTTTAAGAGAATTGATTTGGCTACATATGTCACCAAAGTGCACTTACCTTTTCAAGAACACATCCGAGAGAACTCGAGTTTAAGCGTGCTTAAGCTAGAGTAGTCAAAGGATGGGTGACCTATCAGAAGTGATCCGCGATATCGTGCGAGTGAGGCCAAAGCACGGAAAAGGTCGGTGGTGATTGCAGGGTCAGTAAACAATGATTTCGAGCCTTTTGGAATTATTAACGATCAACCGTCGGATGGGATGGGGTCCACGGGCCGAACGAGAGGGCGTGGATGGCCCATTAGCCGTGGACGGTCGGGGCGTTACA

Brassica carinata (v1.0)

ID:

Contig866_LTR-Cassandra_3266

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

265

Start:

220752  

End:

221016

Strand:

-

>Contig866_LTR-Cassandra_3266

CTCATCCGTCCGTGCGATGAGTGGTGTTATAATTTTTGGATGCTCGAAAATATTATTTATTGACCATATAATCACCACGTGACTTTTTGGCGTGTTTTGGTTTCACTCGTATAGTATCGCGAATGACTTTCCGATAGGTAATTTATCTTTTTATTATTCTAACCCATACACATTTAATTCTGAAATTAAATGGATGTGTGAGCGATAAGGTAAACGCACTTTTATTATATAGGTAACCAAATCCAATTTTTTAACTTTTCCATAT

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3267

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

325

Start:

87520  

End:

87844

Strand:

-

>Contig906_LTR-Cassandra_3267

GGCCACCATGCCCTCTCACTCGGCATGTGGACTCTTCCATCCCGTCTGATGGACGGTCCATTAATTTTTCGGAGGCTCGAAATTATTATTTATTGATCATGCAATCACCACATCACATTTTTCCGTGCTTTGGCCTCACTCGCACAATATCGCGAATCACTTTCTGATAGGTCACCAACCATTTCACTATTCTAGCTCAAGTACGCTTAACGCTGGAGTTCTAAACGGATGTGTGTCGAAAAAGGTAAGTGACACTTTGGTAACATAGGTTGCCAAATCAATTCTCTTATGTCTTTCCGCATATACCAGAAATCATGATGTTACA

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3268

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

316

Start:

87945  

End:

88260

Strand:

-

>Contig906_LTR-Cassandra_3268

CTCACGTATGCTCACTCGGCACGTGGACCCCATCCCTTCTGACGGGCGGTGCGTTAAATTTTTGGAGGCTCAAAATCATTGTTTACTGACCCTGCAATCACCACATAAAAATTTTCTGTGCTTTGGCCTCAGTTGCACGATATCGCGAATCATTTTTCGATAGGTCACCCATCTTTTCACTACTCCAGCTCAAGCACAGTTAACTCTAGAGTTCTAAACAGATGTGTGCCGGAAAAGGTAAGAACACTTTGGTGACATGGATAGCCAAATCAATTCTCTTATGTCTTTCCGCATATACCGAAATCATGATGTTACA

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3269

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

305

Start:

88353  

End:

88657

Strand:

-

>Contig906_LTR-Cassandra_3269

CTCACGTATGCTCACTGCACGTGGACCCCATCCCTTCGGCGGTCGTTAAATTTTTGAGGCTCAAAATCATTGTTTCTCGACCGCAATCACCACATAAAAATTTTCGTGCTTTGGCCTCACTCGCACAATATCGCGAATCATTTTTCGATAGGTCACCCATCTTTTCACTACTCCAGCTCAAGCACAGTTAACTCTAGAGTTCTAAACAGATGTGTGCCGGAAAAGGTAAGAACACTTTGGTGACATGGATAGCCAAATCAATTCTTTTAAACTTTTCCACATATACCAGAAATCAAGATGTTACA

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3270

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

290

Start:

91481  

End:

91770

Strand:

-

>Contig906_LTR-Cassandra_3270

CTCACTCGGCTCATGAGCTCCATTCCGTACGATGGATACTGCGTTAGTTTTTTGTAGGTTCAAAAGTCTTGTTTACTGACCCTGCAATCACCACACGATATTTTTCCTTGTTTTGACCTTACTAACACAATATCACAAATCACTTCCTGATAAAGTGACACATCTTTCCACTACTCCAGTTCAAGCACGTTTAACTTTGGAGTTTTTTTAAAGTGTGACCGAAAAGGTAAATGTACTTTGGTGACATAAATAGCCAAATAAATTCTATTAAGCTTTTCACCATATACCAC

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3271

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

101

Start:

91800  

End:

91900

Strand:

-

>Contig906_LTR-Cassandra_3271

CAGATAGCGCAACGACCCCGTTGCACCTCAGGTTCGTCACCCATGTTAGTGTGAACTTACACATGACTCCACAGTCGTCTAGGTTTGGCTATTATACCACT

Brassica carinata (v1.0)

ID:

Contig906_LTR-Cassandra_3272

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

83

Start:

92121  

End:

92203

Strand:

-

>Contig906_LTR-Cassandra_3272

AAATGTAAATGCATTTTGGTGATATACGTAGCCAAATCAATTCTATTAAACTTTTTATCATATACCAAAAATGGGATGTTACA

Brassica carinata (v1.0)

ID:

Contig946_LTR-Cassandra_3273

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

328

Start:

71458  

End:

71785

Strand:

-

>Contig946_LTR-Cassandra_3273

TGTAACGCCCCGACCGCCCACGGCTAATGGGTCATCCACGCCCGCTCACTCGGCCCGTGGGTCCCATCCCATATGACGGGTGGTGCGTTAATTTTCCAAGGTCCGAAAGTCTTGTTTACTGACTCTGCAATCAACCACATGACATTTTCCCGTGTTTTGGCCTTACTCGCACGGTATCGCAGATCAATTCCCGATAGGTCACCCATCTTTTCACTACTCCAGCCCAAGCACGCTTAACTCTGGAGTTCTAAACTGATTTGTGACGGAAAAAGTATGTAAACTTTGATGACATAGGTAGCCAAGTCAATTCTCTTAAGTTTTTTTCCAT

Brassica carinata (v1.0)

ID:

Contig946_LTR-Cassandra_3274

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

316

Start:

71915  

End:

72230

Strand:

-

>Contig946_LTR-Cassandra_3274

TGTAATGCTCTGACCGCCCACGGCTAATGGGTCACCCACGCCCGCTCACTCGGTTCGTGGGCCTCATCCCGTTCCAACGGCCGGTGCGTTAATTTTCCAAGGCCTGAAAAACTTGTTTACTGACCCTGCAATCACCAATCGATTTTTTCCTGTGTTTTGGTCTCACTTGCACGGTATCGCGAATCACTTCCCGATAGGTCACTCATCATTTCACTACTCCAGCCCAAGCACGATTAACCCTGGAGTTCTAAACGGATGTATGGCGGAAAAGATAAGTCAACTTTTGTGACATAGGTAGCCAAACCAATTCTCTTAA

Brassica carinata (v1.0)

ID:

Contig946_LTR-Cassandra_3275

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

320

Start:

90673  

End:

90992

Strand:

-

>Contig946_LTR-Cassandra_3275

TAACGCCCGACCGCCCACGGCTAATGGGTCATCCACGCCCGCTCACTCGGCCCGTGGGTCCCATCCCATATGACGGGTGGTGCGTTAATTTTCCAAGGTCCGAAAGTCTTGTTTACGACTCTGCAATCAACCACATGACATTTTCCGTGTTTTGGCCTTACTGCCGCGGTATCGCGAATCACTTCCGATAGGTCACCCATCTTTTCACTACTCCAGCCCAAGCACGCTTTAACTCGGAGTTAAACTGATTTGTGACGGAAAAAGTATGTAAACTTTGATGACATAGGTAGCCAAGTCAATTCTCTTAAGTTTTTCCATAT

Brassica carinata (v1.0)

ID:

Contig946_LTR-Cassandra_3276

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

301

Start:

91115  

End:

91415

Strand:

-

>Contig946_LTR-Cassandra_3276

TGTAATGCTCTGACCGCCCACGGCTAATGGGTCACCAGCTCACTTTCGGTTCGTGGGCCTCATCCCGTTCAACGGCGGTCGTTAATTTTCCAAGGCCTGAAAACTTGTTTACGACCTGCAATCACCAATCGATTTTTCCGTGTTTTGGTCTCACACGCGGTATCGCGAATCACTTCCGATGGGTCACTCATCATTTCACTACTCCAGCCCAAGCACGATTAACCCTGGAGTTCTAAACGGATGTATGGCGGAAAAGATAAGTCAACTTTTGTGACATAGGTAGCCAAACCAATTCTCTTAA

Brassica carinata (v1.0)

ID:

Contig961_LTR-Cassandra_3277

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

128

Start:

5106  

End:

5233

Strand:

-

>Contig961_LTR-Cassandra_3277

CACGCTTAACTGTGAAATTCTTCACGAATAGGTAACCAAAACGCCAAATGCATTTTAACTGTATCATTCAGTCCCATTCTTTTAATTTTTCACATGCACCACTATAACTCTCTAAAAATCAGGATATT

Brassica carinata (v1.0)

ID:

Contig973_LTR-Cassandra_3278

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

339

Start:

205969  

End:

206307

Strand:

+

>Contig973_LTR-Cassandra_3278

TGTAACATCTCGGAGTTGTGATATTGTGATATGTGAAAAGGTTTAAGAGAATTGATTTTGCTACCTATGTCACCAAAGTTGAATTACCTTTTCCGTCACACATTCGTTTAGAACTCCAGAATTAAGCGTATTTGGGCTGGAGTAGTGAAAGGATGGGTGACCTATCGGAAAGTGATTCGCGATACCGTGCGAGTGAGGCCAAAGCACGGGGAAAGGTCGGACGGTAATTGCAGGGTTAGTAAACAATGATTCCGAGCCTTGGAAAATTAACGGACCGACCGTCAGACAGGATGGGGCCCACGGGCCGAGAGAGCAGGCGTGGATAGCCCATTTGCCGGG

Brassica carinata (v1.0)

ID:

Contig973_LTR-Cassandra_3279

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

348

Start:

206416  

End:

206763

Strand:

+

>Contig973_LTR-Cassandra_3279

TGTAACATCCCGAGTTGTGATATGTGAAAAGGCTTAAGAGAATTGATTTGGCTACCTATGTCACCAAAGTTGACTTACCTTTTCCATCACACATTCGTTTAGAATTCCAGAGTTAAACGTGCTTGGGCTGGAGTAGTGAAAGGATGGGTGACCTATCGGGAAGTGATTCGCGATACCGTACGAGTGAGGCCAGAGCACGGGGAAAGGTCGGGTGGTGATTGCAAGATCAGTAAACAATGATTCCGAGCCTTGGAAAATTAACGGACATACCGTCAGACAGAATGGGCCCCACGGGCCGAGAGAGCAGGCGTGGGTGGCCCATTAGCTGTGGGTAGTCGGGGCGTTATA