ID Class Order Superfamily Length Start End Strand View
R1_LTR-Ngaro_1 RetrotransposonsLTRLTR-Ngaro13522529272253061-
R1_LTR-Ngaro_2 RetrotransposonsLTRLTR-Ngaro8478913187891401-
R1_LTR-Ngaro_3 RetrotransposonsLTRLTR-Ngaro2141158190111582114+
R2_LTR-Ngaro_4 RetrotransposonsLTRLTR-Ngaro15090605859060734+
R2_LTR-Ngaro_5 RetrotransposonsLTRLTR-Ngaro951123794311238037+
R2_LTR-Ngaro_6 RetrotransposonsLTRLTR-Ngaro2554063329540633549+
R4_LTR-Ngaro_7 RetrotransposonsLTRLTR-Ngaro9473215397321632-
R5_LTR-Ngaro_8 RetrotransposonsLTRLTR-Ngaro22492462949246517-
R5_LTR-Ngaro_9 RetrotransposonsLTRLTR-Ngaro933985501139855103+
R5_LTR-Ngaro_10 RetrotransposonsLTRLTR-Ngaro2604142122341421482+
R6_LTR-Ngaro_11 RetrotransposonsLTRLTR-Ngaro24972852907285538-
R6_LTR-Ngaro_12 RetrotransposonsLTRLTR-Ngaro871449405514494141-
R6_LTR-Ngaro_13 RetrotransposonsLTRLTR-Ngaro973173686431736960+
R6_LTR-Ngaro_14 RetrotransposonsLTRLTR-Ngaro833200310332003185+
R6_LTR-Ngaro_15 RetrotransposonsLTRLTR-Ngaro1514635240346352553+
R6_LTR-Ngaro_16 RetrotransposonsLTRLTR-Ngaro1454635882046358964+
R6_LTR-Ngaro_17 RetrotransposonsLTRLTR-Ngaro1215029934950299469-
R7_LTR-Ngaro_18 RetrotransposonsLTRLTR-Ngaro34122542912254631+
R8_LTR-Ngaro_19 RetrotransposonsLTRLTR-Ngaro21859200105920227+
R8_LTR-Ngaro_20 RetrotransposonsLTRLTR-Ngaro1032093641920936521-

< 1 2 > Total 2


Raphanus sativus (v1.0)

ID:

R1_LTR-Ngaro_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

135

Start:

2252927  

End:

2253061

Strand:

-

>R1_LTR-Ngaro_1

TGCTGTTGAATCCGCTGCTGCTGAAGCTGAAGCTGAAGCTGATAAAGTTGCTGCTGCTGCTGCTGCTGATACTGAAACTGCTGCTGTTGTTGTTTCTGTGAATGGATCTGGAGCTGCTGAAACTGTTGTGCAGCT

Raphanus sativus (v1.0)

ID:

R1_LTR-Ngaro_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

84

Start:

7891318  

End:

7891401

Strand:

-

>R1_LTR-Ngaro_2

TTGCTGCTGCTGATGATGATGATGTTGCTGCAGCTGTTGATGTGACATCTGTACTTGTTGCTGCAGCTGTTGTTGTTGTTGTTG

Raphanus sativus (v1.0)

ID:

R1_LTR-Ngaro_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

214

Start:

11581901  

End:

11582114

Strand:

+

>R1_LTR-Ngaro_3

CAGCAACAGCAGCAACTCCAACAACAACAGATCCAGCAGCAACAACATCAACAGCAGCAGCAGCAACAGATCCAGCAGCAGCAACACCACCAACAGCAACAGCAACAGCTGCCACAACTCCAGCAGCAGCATCAAATGTCACAGCTCCAACATCATCAGCAGCAACAACACCAGTTGTCACAGCTTCAACATCATCACCAGCAGCAGCAGCAGC

Raphanus sativus (v1.0)

ID:

R2_LTR-Ngaro_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

150

Start:

9060585  

End:

9060734

Strand:

+

>R2_LTR-Ngaro_4

AGGTGCTACTAGGCGCAACTAGATACTAGGTACTACTAGGAGCTACTAGGCGCTACTAGATGCTACTAGTCACTAGATTCCACTAGGTTCCACTAGGTGTCACTAGGAGCTACTAGGTGCCACTAGGTGTTAGTGGCCACTACCTACTAC

Raphanus sativus (v1.0)

ID:

R2_LTR-Ngaro_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

95

Start:

11237943  

End:

11238037

Strand:

+

>R2_LTR-Ngaro_5

CTTCTACTACAACAGCAACTTCTACAGTTTCTGCCTCTACTCCTTCTGCTACAACTACTGCTGCTGCTGCTACTGTTGCAGCTACCATACAGTTA

Raphanus sativus (v1.0)

ID:

R2_LTR-Ngaro_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

255

Start:

40633295  

End:

40633549

Strand:

+

>R2_LTR-Ngaro_6

CAGCAAATGCAACAATCTCAACACCCACAGGTCTCCCAGCAGCATCAACAACAACAACAGCAAATACAAATGCAACAACTCTTGTTACAGCGTGCACAACAACAGCAGCAACAGCAGCAACAGCAGCAACAACAACAGCAACATCATCAACAGCAGCAGCAACACCAACAACAGCATCAAAACCAACCACCTTCTCAACAGCAGCAGGCAGCGCCTCAACACCAACAACAGCCAACAGCACAGCAGCAGCAACAG

Raphanus sativus (v1.0)

ID:

R4_LTR-Ngaro_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

94

Start:

7321539  

End:

7321632

Strand:

-

>R4_LTR-Ngaro_7

TAGTAGTAGTAGTAGTAGTAGTAAGTAAGTAGTAGTAGTAGTACGTAGTAGAACGTAAGTAGTAGTACGTACGTACGTACGTAGTAGTAGTAAC

Raphanus sativus (v1.0)

ID:

R5_LTR-Ngaro_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

224

Start:

9246294  

End:

9246517

Strand:

-

>R5_LTR-Ngaro_8

TGTTTTTGTTGTTGTTGTTATTATTATTCCCATTGTTGTTGTTGTTGTTGTCATTGTTATTCCCCTTGTTGTTATTACCATTGTTGCCATCATTGTTGTTGTTATTGCCATTGCTTTTGTTACCATTATTTCCATCGCTGTTGTTATTACCATTGTTGCCATCGCCGTTGTTGTTACCATTGTTGTTGTTGTCATTGTTTCCACCATTGTTGTTGTTATTGCTT

Raphanus sativus (v1.0)

ID:

R5_LTR-Ngaro_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

93

Start:

39855011  

End:

39855103

Strand:

+

>R5_LTR-Ngaro_9

CAGCAGCAGACACAACAGCAGTTTCAACAACAGCCACAACAGCAGTTGCAGCCAAGACAGCAGCCACATCCACAGCAGCATCAGCACCAGCGG

Raphanus sativus (v1.0)

ID:

R5_LTR-Ngaro_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

260

Start:

41421223  

End:

41421482

Strand:

+

>R5_LTR-Ngaro_10

CACCTCCTTCTTCTGACTCGCAACCTCCACCGTCTCCACAACAAGGAAACAATAACAGCAGCAACAACAACAATGGTGGGAACAATGACAATAACAACAACAACAACAACAATGGTGGGAACAATGACAACAACAACAACAACAATGGTGGAAACAATGACAACAACAACGGTAATAACAACAATAATGGCAACAATGGTAATAACAGCAATAATGGCAACAATGACGGCAACAATGGGAATAATAACAACGGAAACAAC

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

249

Start:

7285290  

End:

7285538

Strand:

-

>R6_LTR-Ngaro_11

TATTATTGTTGCTTCCTCCACCATTGTTGTTATTATTCCCATTGTTGCCATCATTGTTGTTGTTGTTATTCCCATTGTTGTTGTTGTTGTTGCCATTATTGTTGTTATTATTACCATTGTTGCTTCCTCCACCATTGTTATTGTTGTTGTCATTGTTTCCACCATTGTTGTTGTTGTTGTTGTCATTGTTTCCACCATTGTTGCCTTGTGGTGGAGATGGTGGAGATTGTGAGTCTGAAGAAGGTGGTG

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

87

Start:

14494055  

End:

14494141

Strand:

-

>R6_LTR-Ngaro_12

TAGTAGTAGTAGTAGTAGTAGAGAGAGTAGTAGAAGAGTAGTAGAGTAGTAGTAGTAGTAGAGTAGTAGTAGTAGTAGTAGTAGTAG

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

97

Start:

31736864  

End:

31736960

Strand:

+

>R6_LTR-Ngaro_13

GCTTCTGCAGCATACTGCTTCTACAGCATATTGCTACTGCTTCTACAGCATGCTGCTACTGCTTCTACAGCATACTGCTACTGATTCTTCATCAGCT

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

83

Start:

32003103  

End:

32003185

Strand:

+

>R6_LTR-Ngaro_14

CTACTTTCACTGCTATCGCTACTACTACTATTACTTCTGCTGCTTCTACAACTACTCATGCTGCTTTCGCTAAACAGACTGCT

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

151

Start:

46352403  

End:

46352553

Strand:

+

>R6_LTR-Ngaro_15

ACAACAGCTCCAGCAGTTGCAGCTTCATTCACAGAAACAACAACAGCATCAACATCAACAACAACAACAACAGCAGCAGCAGCAGTTTCAGTTTCAACAGCAACAAATACAACAGCTTATGCATCAACGTCTTCGACAGCAGGAACAACAA

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

145

Start:

46358820  

End:

46358964

Strand:

+

>R6_LTR-Ngaro_16

ACAACAGCTCCAGCAGTTGCAGCTTCATTCACAGAAACAACAACAGCATCAACATCAACAACAACAACAACAGCAGCAGTTTCAGTTTCAACAGCAACAGATACAACAGCTTATGCATCACCGTCTTCGACAGCAGGAACAACAA

Raphanus sativus (v1.0)

ID:

R6_LTR-Ngaro_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

121

Start:

50299349  

End:

50299469

Strand:

-

>R6_LTR-Ngaro_17

GTCGTAGTAGCAGTAGTTGATGCTGCCTGGGGTACAGCAAAAGTAGTAGTTGCAGCAGCAGAAGTAGAGGTGGTAAAACCAAATGCTGGAGCAGGGGAAGTAGCCGTAGTAGTGTTGGCTG

Raphanus sativus (v1.0)

ID:

R7_LTR-Ngaro_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

341

Start:

2254291  

End:

2254631

Strand:

+

>R7_LTR-Ngaro_18

CAACAGCAGCAGCTGCAGCAATTGTTGCACTCCTCTTTGAACCATCAGCAACAGCAATCACAGCCTCAACAACCACAGTCGTTGCAGCAACAACAACAACAACAATCACTGCAGCAGCAACAACAATCACTACTGCAGCAGCAGCAGCAACAACAACAATCGCTGCAGCAACATCATCAACAACCGCTACAGCAACAGACTCAGCAGCAGCAGCTGCAGCAACAGAATCAGCAGCAGCAAATACAACAACAGCAGCAGTTAAGATCGCAGCAACTGCAATCTCAGCCCCAGTCACATCCTCAACATATGTTGCAGCAATTTCAGATTCCGCAGAATCAGCT

Raphanus sativus (v1.0)

ID:

R8_LTR-Ngaro_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

218

Start:

5920010  

End:

5920227

Strand:

+

>R8_LTR-Ngaro_19

AACAACAGCACCAACAACAGATCCAGCAGCAGCAGCAACAACAAATCCATCAGCAGCAGCAGCAACAACAGCAACAGATCCAGCAACAACAACACCACCAACAGCAACAACTGCCACAACTCCAGCAGCAGCAGCACCATCAATTGTCACAACTCCAACATCATCAGCAACAGCAGCATCAGATGTCTCAGCTTCAACAACATCATCAGCAGCAGCAG

Raphanus sativus (v1.0)

ID:

R8_LTR-Ngaro_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

103

Start:

20936419  

End:

20936521

Strand:

-

>R8_LTR-Ngaro_20

CCTATAGCGAGTGAGCTTGTAGCGAGTGAGCTTGTAGCGAGTGAGCTTGTAGCGAGTGAGCTTGTAGCGAGTGAGCTTGTAGCTAGTGAGCTTGTATTGAGCG