ID Class Order Superfamily Length Start End Strand View
R1_LTR-Gypsy_1 RetrotransposonsLTRLTR-Gypsy1303336533494-
R1_LTR-Gypsy_2 RetrotransposonsLTRLTR-Gypsy4003407334472-
R1_LTR-Gypsy_3 RetrotransposonsLTRLTR-Gypsy2703650136770-
R1_LTR-Gypsy_4 RetrotransposonsLTRLTR-Gypsy99470821470919-
R1_LTR-Gypsy_5 RetrotransposonsLTRLTR-Gypsy10218903291890430+
R1_LTR-Gypsy_6 RetrotransposonsLTRLTR-Gypsy9428320532832146-
R1_LTR-Gypsy_7 RetrotransposonsLTRLTR-Gypsy12033753663375485+
R1_LTR-Gypsy_8 RetrotransposonsLTRLTR-Gypsy27346344094634681+
R1_LTR-Gypsy_9 RetrotransposonsLTRLTR-Gypsy27150692665069536+
R1_LTR-Gypsy_10 RetrotransposonsLTRLTR-Gypsy319860716246074821+
R1_LTR-Gypsy_11 RetrotransposonsLTRLTR-Gypsy360065804376584036-
R1_LTR-Gypsy_12 RetrotransposonsLTRLTR-Gypsy50265841626584663-
R1_LTR-Gypsy_13 RetrotransposonsLTRLTR-Gypsy283465926806595513-
R1_LTR-Gypsy_14 RetrotransposonsLTRLTR-Gypsy13265961856596316-
R1_LTR-Gypsy_15 RetrotransposonsLTRLTR-Gypsy118868116506812837+
R1_LTR-Gypsy_16 RetrotransposonsLTRLTR-Gypsy53868132376813774+
R1_LTR-Gypsy_17 RetrotransposonsLTRLTR-Gypsy22768138766814102+
R1_LTR-Gypsy_18 RetrotransposonsLTRLTR-Gypsy13468142366814369+
R1_LTR-Gypsy_19 RetrotransposonsLTRLTR-Gypsy9473789347379027-
R1_LTR-Gypsy_20 RetrotransposonsLTRLTR-Gypsy37274779047478275+

< 1 2 3 4 5 > Total 1242


Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

130

Start:

33365  

End:

33494

Strand:

-

>R1_LTR-Gypsy_1

ACGGGTATATGTATACGAACCCACTGCCCACTTTTTAGAGAGGAGGATAGCTGAACTCGTCTTTTGACAACTACCTACGTACCCCTTTCGAAGATCAAGCCATCTCGTAGTTCAGTTGGTTGCCGCGTAT

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

400

Start:

34073  

End:

34472

Strand:

-

>R1_LTR-Gypsy_2

CGCAGCGGCTCGTCCTCCCTTTGAGTCAAGCTCCAAAGGTTGACATCAGAGGTTTCTCTGTTCATGAATATGGAGTGCTGCTTGAGAAACTCGGGTGCGAGTTGTCGAAAGCTTCCATTGCATTTCAAGCAGAGAAAACCATTCGAGTGCAGCTTCCTGTAGTTTTTCGACGAAGAGGAGGCAGTATCCAGCATCTCGTTCGCGCTCCCTAATTTTTCACCTCCCCATCGCAATCTGGAAATATTATAGATGCACTTTTGGGTCCATGATGCCATTGTACACGGGAATTTTGATCTTCCCATGATCTGAGACTGTTTTTCGCGCTTCCTCGAGAAGTCTGTCGATCTCGGGAGAGGTGCTTGTTGCGTGGTGAATTTGCTATTTTATCGCTTTCACCTCT

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

270

Start:

36501  

End:

36770

Strand:

-

>R1_LTR-Gypsy_3

TGATGTAGCTCAAATTACCGTAGAAAACTATCTCAAATAAGAGATAGATTATAGTATTTAGTGATCAAATCTGCATGGAGCGTGGATTAAATAATAAACTATAAATATTAAGATTAATCTAGGCAAACTATATTAAAAGTAGTAATAATAGGAATAAAGTAGGTTGTAAGATATGTGGGAAAAGCTACATTTAAGGTTTTAAACGAGTTATCAGAACTTAAATCTATAAATGCATAAGGTTTAATAAGAACCATCCTAGAATTCGAATTA

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

99

Start:

470821  

End:

470919

Strand:

-

>R1_LTR-Gypsy_4

TAACTAGGATAATCACAAAGATCTTATTTAGTCTAAGAATGCCTAAGATCAATGTCTTCTTAAATTCGTTGAGATCACCAATGATCTACCGAAAACAAG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

102

Start:

1890329  

End:

1890430

Strand:

+

>R1_LTR-Gypsy_5

TGTTGTACTCTTTTTCATGTCCATGGTTTCCCATTTTGCCACATTGGTTTTGGGGTTTTCCAGGAGAGGTTTTAATGAGGCAACATTAAGCATGCAACGAAC

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

94

Start:

2832053  

End:

2832146

Strand:

-

>R1_LTR-Gypsy_6

AGTTGCGGAAGAGCTCCTGATTTACCCTATAACAATCTCCCTTGGATATGACACACCAAATTTGATTGAGTTAGATTGAAGGATATTACACACC

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

120

Start:

3375366  

End:

3375485

Strand:

+

>R1_LTR-Gypsy_7

TATGTTTTCTAATTGGTTTTCAAGTCTTTATCGAGTCTTTCTAGTCCTTTTCGAGTCATTACAGGTCTGGAGTTGCACTGGATGGGAGATGGACCTGCTGGAACAAAAGAAGCAGAAAAC

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

273

Start:

4634409  

End:

4634681

Strand:

+

>R1_LTR-Gypsy_8

TTGAGGTTGCTGAGAATCCATTCGTTGAGCTGCTAAGGTTGCGAGAAACTAACGGAGTCGTGGAATATCATGAGAGATTTGAGATGCTTAGATCCAAGACTAGCTTATCTGAGGAGTATATGGTTAGGCCATTTTTGGATGGATTGAAGATGGATACTCAAGCATATGTCAGAAGGTTTCAACCTCAGTCCATTCGCCAGTGTTTGATTTTGAGAAAAATGTATGAGAAAGTTCAGCACAAGACTTCTACCAGTGAATCACGTCCAGCAGCAG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

271

Start:

5069266  

End:

5069536

Strand:

+

>R1_LTR-Gypsy_9

GCAACGGAGTGTGTAGCGATTCCAATCTTCACAGGCGATGACTTGCGATCATGGATTTTTGGGTTGGAGGAGTTCTTTGTGCGGGAGGATTTCACAGAGGACGATGACAAACTTAATTTTGCTCAGAGTTTCATGGATGGTGAAGCTGTATCTTGGTTTCAATGGCGACAATCATTGTGGTTGTTTAACAGTTGGGAATCACTGAAGAAATCCTTGTGGTTACGGTTTGGAAGTGATGAAGATTCGGAGATGATAAAGTACAATACAGAAA

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

3198

Start:

6071624  

End:

6074821

Strand:

+

>R1_LTR-Gypsy_10

AAAAATCTCGTGTAGGATTGGTTTCGGTTGGAGGTGAGCCCGCTCACACCTTATTTGACACGGGAGCTTCTCACAGTTTTGTGACTCCGCGCTTTGCTAAGTGTTGGTCTTTTCGAGGAGTCTTCGTGCAGAAGGCTAAGCAGATTCAGACTGCCGGTTCAGAGAAGTTGGGAACAATCGGTATTCATCACGACGTACCAGTTACACTTGGAGGAGTTGAGTTTCTCGGAGACTTGACAGAGATGGAGCTGAGTTTCTACGATGTCATACTTGGGATGGATTGGCTATCACGACATAGAGTTGTATTGGATTGTCCGGATGCAAGAGTTAATATCCCTAGAGCTGAAGGGAAGATCGTTTTCCAGGGGACTCGGGCACACCAGGGAATTTCTATTGTCTCCATGTTGCGTGCAGAGGAATTGTTGGAGAATGGAGCAGAGGGATTTTTAGCGACCATTTCGATGGACAAGGATGATGATCAGCTCGAGCTACAAGATATTCCAGTGGTTGCCGAGTATGCAGATGTTTTTGAGGCTTTAAAGGGGCCACCACCAGCTAGAAGTGATGTTCTTGCAATTGAGGTGGAACCAGGGGCAGCACCAGTTTCACGAGCTCCTTACCGTTTAGCTCCCGCAGAGATGGCTGAGTTGAAGAAGCAGTTGGAGGAACTATTAGATAAAGGTTTTATCAGGCCGAGCACTTCACCGTGGGGAGCACCAGTTTTGTTTGTGAAGAAGAAAGATGGAAGTTTCAGACTTTGTATCGACTACCGAGGTTTGAACAAAGTCACCATCAAGAATAGGTATCCGCTTCCGCGTATCGACGAGTTGTTGGACCAGTTGCAAGGAGCTTCATGGTTTTCTAAGATTGATCTAGCATCAGGATACCATCAGATTGCCATAGCAGAGGGAGATGTACGGAAGACGGCCTTTCGTACACGCTACGGACATTATGAGTTTGTGGTGATGCCATTTGGGTTGACGAACGCACCAGCAGCATTCATGAAGCTAATGAATGATGTATTCCGTGAGCATTTGGATAAGTGTGTGATCGTTTTCATCGACGATGTCTTGGTTTATTCTCGGAGTAGAGAAGAGCATGCTGAGCATTTACGGATTGTGTTGGAGAAGCTTAGAGAGCATCAGTTGTTTGCTAAGTTGAGTAAGTGCAGCTTCTGGCAGAGGAAGATCGGATTTCTCGGTCATGTAGTTTCAGAAGAAGGAGTTGCGGTAGATCCAGAAAAGATTAAAGCAATTTCAGAGTGGCCGACACCTAAGAGTGCGACGGAGATCCGCAGTTTTCTCGGTTTGGCAGGATACTACAGGAATTTCGTCAAGAGTTTTGCTAGCATTGCAAAGCCAATGACAAAGTTAACGGGCAAGGACGTCAAGTTCGATTGGACAGATGGGTGCTCGGAGAGCTTTGCTGAGTTGAAGCGACAACTGACTCAGACACCAGTTTTGGTACTCCCGAGGCCAGGGATACCATATGAGGTTTACACTGATGCATCAGGCACTGGATTGGGATGTGTATTGATGCAGGAGGGCAAGGTCATCGCATATGCATCACGACAGTTGAGGCCTCACGAGGCTAATTATCCTACGCACGATTTGGAGTTAGCGGCAGTTGTCTTTGCGTTGAAGATTTGGAGGTCGTATTTGTATGGAGAGAAGGTGAAGATCTTCACTGACCATAAGAGTCTGAAGTACATTTTTACTCAGACGGATTTGAACTTAAGACAGCGTAGATGGGTGGAGTTGTTAGCAGACTACAACTTGGAGATTGCTTATCATCCGGGAAAAGCTAATCAAGTGGCAGATGCCTTGAGTAGGCGCAGGAGCGATGTTTCACGAACTAAGGAGGTCCAGGAGTGTATGGGAACACTTGCTAGTCTCAGATTATGCGCCACTACGGTAGACGGAGAGACAGTTGGCCTCGAGGCGGTAGATCAGGCAGATTTACTATGGAGGATACGTAAAGCTCAGGATGTCGATAAGGCTTTGTGTAAGCAGATTGAGATCGAGAGTATTGGATATCACACAGCGTCGAGCGGGATGTTCATGTACCGGAACCGAGTTTGTGTACCCAGTGATGAGCTGTTAAGAAAGGAAATCCTACAGCAAGCACATCACTCTCGTTTTTCTATTCATCCGGGGAACACCAAGATGTACCGGGATCTGAAGCGTTACTACCATTGGCCTGGTATGAAGAGGGATGTTGCTACATTTGTATCGCAGTGTCAGACCTGTCAGATGGTTAAGGCTGAGCACCAGGTTCCTAGTGGGTTATTGCAAAACCTGCCATTGCCGGAGTGGAAATGGGATATGGTGACTATGGATTTTGTATTGGGGTTACCGACTACATCAGGAGGGAAGAATGCCATATGGGTAATTGTGGACAGACTTACCAAGTCAGCCCATTTCTTAGCGATTAAGACGACCGACGGAGCAAGTCAGTTGGCGCAGATTTACATCGATGAGATTGTGAGATTGCATGGAGTTCCCGTGAGCATTGTATCGGATCGAGACGTAAAGTTTTCATCTATATTCTGGAAAGCCTTTCAGAAGGCACTTGGGACAAAGGTCCATATGAGCACAGCTTACCATCCGCAGACCGACGGTCAGTCAGAGAGGACTATTCAGACCTTAGAGGATATGTTGAGAGCTTGCGTTTTGGATTGGAAAGGAAGTTGGACAAAGTATTTGCCTTTAGCAGAGTTTGCCTACAACAACAGTTATCACTCGAGCATTAAGATGGCACCGTATGAGGCTCTTTACGGTAGGCCTTGCCGCACACCGCTTTGTTGGACAGAAGTGGGGGAACGACGTGAGATTGAACCTGCTATGGTTCAAGAGACGGTAGAGCAGGTTGAGATGCTCAAGGCTCGGCTTAAGGAAGCCCATGACCGTCAGAAGAGTTACGCAGATAAGCGGCGTAAAGATTTGGAGTTCCAGGTTGGCGACCTGGTATACCTGAAAATGAGAACATTTCAGGGAGGATCTAAGACTCGGAAGCTGAAGAAGCTTAAACCGAGATACATGGGACCATATCCTATTTTGGAGCGGATTGGAGCAGTTGCTTACAAATTGGATTTATCGGCAGAGTTATCTGACTTCCACGATGTGTTTCACGTTTCCGTTTTGAGGAAAGTTGTTAGAGAGCCAGAGCTCATTTTGCAGCAGCCACCAAGTGATCTTG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

3600

Start:

6580437  

End:

6584036

Strand:

-

>R1_LTR-Gypsy_11

CTCCCGTTTTGAGAAACCTTGACTTCAAGGTTTAAAAGCAGGGAACCTCCTCTCTAGTTCAAACAAGAACTCCCAAGTAGCTTCATCCTCCGGTTGATTACGCCACTTAATCAGAACCTTCGTCACTGCTCTACCCTGACGCTTCACCATCTTCCTCGCAAGAATAAGCTCCGGTTCCTTGATCAACACGTCAGACACCACTGAAGGAAGAACCGTAGATGTCTCCACATTACCCACTGCTTCCTTAAGCTGAGACACATTGAATACCGGGTGAACTTGAGAACCCGTTGGCAACTCCAACTTATACGCAACACTACCACATTTGTTGACAATCTTGTAAGGCCCAAAATACTTAGGAGAAAGCTTCTGATTGGAGCGAACCACCACATAACGTTGACGATATGGTTGAAGCTTCACATAAACATAATCGCCCAACTCGAAGCTTCTATATGTTCTGTGTTGATCTGCAAACTGCTTCATCCTGTGTTGAGCTCGTGACAAATGAAACTTAAGCATCAGCAACATGTCTTCTCTGTCACGTAAACACTGATCCACCACTGCAACTTTCGACTCGCCTGGTAAGTACGGTAGATGCTGAGGCGGAGGACGACCATAGACCGCTTCAAACGGTGTAGTTTGAATCGTAGAGTGGAAGTTTGTGTTGTACCAATACTCCGCAAGTGGTAGCCACTTACTCCATAACTTCGGCCTGTCACTACACATACAACACAAATAAGTTTCCACTCCTCTGTTTACAACTTCTGTCTGTCCATCGCTCTGAGGGTGATAGGCACTTGACATGTTCAAAGCCACTCCTTGCAAGCTGAACAACTCCTTCCAGAAGTCACTCAAGAAGATAACATCACGGTCACTAACAATCGACTGAGGAAACCCGTGGAGTTTGAAAACATTGTCTAAGAACGCATGAGCGACAGAGGAAGCAGTGTAGGGATGAGACAATGCCACAAAATGAGCAGCTTTGCTCAACCTATCAACCACCACCAAAATGACTGATTTCCCACAAGACAATGGAAGCCCATCGATGAAGTCCATCGAAATATCAGACCAAATAGACTCTGGAATGGGTAATGGTTCCAAAAGCCCTGGGTAAGCTGTTGTATCGTATTTGCACTGTTGACAAACACTGCAGCTTCTGATGTATTGTTGGATGTCTTTCATCATGCCCTTCCAATAAAATATGCCCTTGACTCGCTGATGAGTGACATCTCTTCCCGAATGACCACCAATGCCTGAACAATGAAGCCATTGGAGAATCTTATCTCTGATCTCCACAACATTTGGAACCACGATTTTGCTCTTCCTTCTTAACACCTCCTGAGACCACGAGTAATGCTTCTTTGACAGCGCTTTAACCTTCAACTCTTCAATTATAGCTTTCACATTACTGTCCAATTCATAGGCTTGTTTAATCTGCTGCATCAAATCACACTCAAGCACTGACATAGCCATATGTAAAACTTCTGATCCCTCGACTCGAGATAAGGCATCTGCTACTACATTTTCCTTGCCTTGTCTGTATTGTATCTCGTAGTCGAACTCCAACAATTTTGGTAACCACTGTTGCTGAATTGGTGTATTCAATCGCTGTTCCAGTAGGTACTTCAAACTCTTTTGATCGGTCTTGATAATGAAATGATTCGGAAGCAAATAGTGGTGCCACTTCTGCACTGGAAACACCACTGCTAAGAGTTCCTTCTCATAGATAGAAAGATGAAGTTGCTTCCCTTTCAAGTGCCGACTTATGTAAGCTATGGGATGTCCCTCCTGCATCAACACTGCCCCAATGCCATGTCCACATGCATCAGTCTCTACAATAAAGGTTTTGTCGAACTGAGGTAAAGCCAAAACCGGTGCCTCACACAAAGCTTTCTTCAATATACCAAAAGCAGTTTCAGCTTCTACAGACCACTCAAAACAATTCTTCTTTGTTAAAGCCGTGAGAGGAAAAGCAATAGGACCAAAACGCCACACAAAACGTCTGTAGTAACCAGCAAGCCCCAAGAATCCTCTCAATGCCTTTAATGATGATGGAATAGGCCATTCGACAATTGCTCTTATCTTCTGTGGATCGGTTGAAACACCCTCCTTTTGAATAAAATGACCCAAATATTCCACCCGATCAGTAGCAAAAGAACATTTGCTGCGTTTTGCAAATAATTGATTGAGCCTCATCAACTCATACACACTCGCCAAATGTTCCATATGTTCTTCGACTGAAGAGCTGTACACCAATATATCATCAAAGAAGATCAGAACACACTTCCTCAACAACTCACTGAACACTGTATTCATTAGACTCTGAAATGTAGCAGGTGTGTTGGTTAACCCAAAGGGCATAACCAAATACTCGAAGTGGCCAGTATGGGTCTTGAACGCTGTTTTATGAATATCAGCAGGGTCCATTCGCACCTGATGATACCCAGCCCTGAGGTCTATCTTTGAAAACACGCAAGCACCTCCCAACTCATCTAAGAGATCCTCAATCAACGGAATAGGAAATCGGTCTTTAACTGTCATGTTGTTAAGGCCTCTGTAATCAACACACAACCTCAAACTTCCATCCTTCTTCTTAACCAAGACTACAGGTGATGCATAAGAGCTACAGCTCGCCTGAATCGTACCTGCCTTCAATAACTCCTTTACCATTTTATCAATCTCATCCTTCTGGTGTAAAGCATAACGGTATGGTCTCTGGTTAACCGGATTAGAGCCCTCCAAAAGTGGAATTTTGTGGTTATGATTCTCTCGAAATGGTGGTAAGGCTGTAGGTTCTTCGAAGATATCAGCATAAGAGTGAATCAACTCAGTAATAGGCCGAGAGTGCTTCTCAACTTCACCACCCTCTAAAGCACACAAACTCTCCTGTACTGTTATTTCTTCAGTCTGAACTGTGAGCATCGAGATTTGTACAACGTCATCATCCTCCAAATTCATCTTCTTTGCCCTCACTTCTCGGATAGACCCCTCCTTAAGTCCATGTAGTAACACAAACTTAGGACCTCTCCTGAACTTCATCGTTAACTCTTGGAAATCCCAAGTAATAGGACCCCATTGTTCCAACCACTGGACTCCCAATACCATATCACAACCTCCCAAAGGAATAACCATGAAGTCAGCTGCGAAAGAGTTGTGTTGAAAGTTCCATGAAAAGTTGTTGATTTTAGCACTCACACCCAGCTTACGGCCATCAGCAACCGCTACTCTTGCAGAACTCGCTGGCAGTAACTCACACCCCAATTTTGTTGCTGTTTTCTCGTCAATGAAGTTGTGAGTTGAACATGAGTCAATGAGCACAAATAAGGTTCTCTTGCCAGCTAATCCTTTTACTCGCATAGTACGATACTGAGGTACCAGTGACTGCATTCACAGAAATCTGAGCTACTTCTTCATGATTCTGCTCTTCAATCATCTCCTGTTCCTCAGGCGTCAGTTCTTCTTCCTCTTCCACCTCCATTACAAACAATTGCGTCTTTTTGTGCTTCAAAAAGTGACCAGGTGTGTACTTCTCATCACAAAAATAACACAGACCAGCAGCTCTACGTTTGCTCATTTCCTCATGCGTAAGGAACTTCCGAGGTT

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

502

Start:

6584162  

End:

6584663

Strand:

-

>R1_LTR-Gypsy_12

TTCTTTGGATGAGCCTTCTCATACAATCGTCCCAACATCAGACATTGGCGAACTGACACTGGCTGAAACATACGAATATGCATCTGAGTGTCAAGGCGTAATCCTGCCAAATAAGCGCTGACGAGATAGTGCTCAGGAAGGTTGACTCGAGTACGAATCAGCTCAAATCTCCCATGATACTCAACTATACCATTAGTCTCCTGCAACTGCTTCAACTCTGCAAAAGGATCATCCAACAACTCTTCAAAACGTTCAGTCAACAACATCAAATACGTTGGCCAATTCTGTAACAAGTTTCGATGAGTCTCAGATTGTAGTACAGCGTGATGCCAAGTAGCGGCAAGGCCATCAAAGTGCATCGACGCTATACCAACTTTCAACTCCATAGGTGTTTGATCCATGTAAAAGAACTGCTCCACCTTACATAACCAATCCTTCATCCCTTCACCATTGAAACGAGGGAAATCAAGTTTCGTCAAACGCGTCATACCAGAGTAGTGAG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

2834

Start:

6592680  

End:

6595513

Strand:

-

>R1_LTR-Gypsy_13

AACCTTGTCCTCAAGGATTGAAGAGAGGAAACTTGGTGGCGAAGTCATGATAGAACTCCCAAGTGGCTGTATCAGGTGACTCTCCTTTCCACTGCACGAGTACTTTAGTAGCTGCAGCATTACGTCGCTTGACCGTTTTGGTTTCCAGGATTGCTTCCGGTTCTTTGGCATTGCCAAGATCAAGCCAGTACTGGGGGACAGCAGGCGTGGAGGTAGCAGATGGATTAGGGCAGAGCTTAAGTTGGCTCACGTGGAAGGTATCGTGAATGGCGGCTTCAGGGGGAAGTTGTAGCTTGTAAGCAACAGTTCCCACACGGTCAATGACTTTGAAGGGACCGTAGAAGCGGGGTGACAGCTTATGAGGTGTTTTTCTGTTCTTCAGGCTGTGTTGACGGTAAGGCTGAAGCTTCAGATACACGAAGTCTCCCACTTTGAATTCACGGTGAGAGCGGTGTTTATCAGCGTACTGGCGCATGCGGTTCTGAGCGCGAAGGAGGTGAAATTTTAACATGTTGATCACCTCTTCACGTTTTTGTAGACTGCGATCAACAACAGAGCAGGAACTTTCACCCGGGAGATAAGGCAAGTGAAGTGGAGGGGCTTGTCCGTAGATGATTTCATACGGTGTTGCTTGAATCGCTGAATGGAAAGTAGTGTTATACCACCATTCTGCTAAGCTCAGCCATTTACTCCAGGAGGAGGGGGTTTCAGCGATCATGCAGCGTAGATAAGTCTCCAGAGTTTTATTTGTGATCTCCGTTTGGCCATCGGTTTGAGGGTGGTAAGCTGTTGACCGCTTGAGATCTACGCCATGAACTCTGAATAGTTCCTTCCAAACTTCGCTGATAAAAGTGGGATCACGGTCGCTTATGAGGTCTTTTGGCATCCCATGAAGTTTGAAGATGTTATCCAAATAGGCTTGAGCGACCGAGATAGCAGTATAAGGGTGTGAGATGCCGATGAAGTGAGCGTTCTTGCTCAGTCTGTCAATGACCACCAGTATACAATTTTTGCCGTTGGAAGGAGGGAGACCTTCGATAAAATCCAGACTGACTGATTCCCAGACGCCAGCAGGTATAGGGAGGGGTTGGAGTAATCCGGGTTTAGCAGCCAAGTCAAACTTGTTTTGTTGGCAAATGGCGCAGTTGCGGATGTAGTGCTGGACCTCAACGTTCATCTTAGGCCAGTAAAACAGTGACTTGATCCTGTGTAGAGTTGCGTCTCTACCAGAATGGCCCCCCACAGCGGAGTCATGAAGCCACTGCAAGATGTGCAGCTTGACAGCTTTGTCGTTGCCAACAACCAGTTTACCTCTGCGGCGAAGTTCTCCATTGATGAAAGTGAACTGAGGGTGAGAGGACTTGTCCTTCTCCAGATCGGTGATGATCTTTTGAAGATGAGAGTCAGTCTCCCATAGCAGCTTCAGGGAGTCGTAAAACCCAGTGTGAGCTTCAGACAGAACCAGATGCAGCAGCTGAGAACCCGTTACTCTGGAGAGAGCATCTGCGACAGTGTTGTCCTTCCCCTGCTTGTAGCGTATTTCAAAGTTGTATCCCATCAGCTTAGAGAGCCACATATGCTGGAAAGGGGTGTTGATCTTCTGCTCTAAGAGGTATTTAAGGCTCTTCTGATCAGTGTTGATGATGAAGGGTCTATGGGCTAGATAGGCATGCCAAGTTTGAACGGCATGAACCAGAGCTAACAGTTCCTTTTCGTAGACTGATAACGCCTGATGTTTGGGACCGAGGGAGCGGCTAATGAAGCAAATTGGGTGGTTGTTTTGCATAAGCACAGCACCGATACCATTGTTAGAGGCATCAGTCTCCACAACAAAAGGTTGATCGAAGTTGGGGAGCGCTAAAACTGGCGTTGAGCAGAGAGCAGTCTTAAGGTTGATGAAAGAAATGTTGGCGTCGTCAGACCAAGTGAAGCCGTCCTTCTTAAGGAGTTGGCTAAGAGGGCGAGAGATGGAGCTATAGGCCATTATGAAACGTCGATAGTAATTTGCCAATCCCAAGAAGCTCCGAAGGTGCTTCTGTGTCGTAGGGATTGGCCAGTTACTGATGACGTCGATCTTCTTCGGATCAGTGCTGACACCGTCTGCAGAGATGAAATGACCGAGGTATTCTATCAGTGTAGCTCCAAATGTACATTTAGAAAGCTTGAGATAGAGTTGTTGTGCTCGTAGGATGGAGAAGACTTCAGTAAGGTGAGCGAGATGGTCCTCCCATGTATTGCTGTAGACAAGAATGTCGTCAAAGAAGACAAGGACAAACTTGCGAGAGATGTCACGGAAGACATGATTCATCAAGCTCTGAAACGTGCAGGGAGCGTTGGTGAGGCCGAATGGCATGACAAGGTACTCATAGTGGCCGTTGTGGGTCTTAAAGGCAGTCTTGTAGATATCCTCTTCAGACATTCTGAGTTGGTGAAAGCCAGCCCTTAAGTCCAACTTCGAGAAGTAATGAGCACCGCCAAGTTCATCAAGGAGGTCTTCAAGCAGAGGAATAGGGTATTTGTCTTTGATAGTCTGCTTGTTGAGTCCTCTATAGTCAACACATAATCTCCAGGTACCGTCCTTTTTCTTAACAAGAACAATAGGAGAGGAGTAGGGACTGGTGCTGTGCTGTATAAGTCCTTGTGTTAGCATCTCGTTGATTATTTTGTCAATGCTGTCTTTCTGCAGAGATGAGTAACGGTAAGGACGAAGATTGACAGGGTTGGAGCCGGAGAGCAGAGGTATCTTGTGATCGAAGCCTTCGCGAAAAGGTGGGAGGGACTTAGGCTCCTCAAATATATCAGAGAAAGCATCTTGCAGCTGTAGCAAAGCAGGA

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

132

Start:

6596185  

End:

6596316

Strand:

-

>R1_LTR-Gypsy_14

ATCGTCATCACACTCCATTACAAAGATTTGAGACCTCTTGTGCTTCAGTTGGTGACCTGGAGTAAATGTCTCCTCACAGAACATACAAAGGCCTTTTGAGCGCCTGTCCTGCATTTCTTGGTAAGAGTATTT

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

1188

Start:

6811650  

End:

6812837

Strand:

+

>R1_LTR-Gypsy_15

GTCAGGCCCTACCGATATGCATATTTTCAGAAAGACGAGATTGAACGTCAAGTGAACGACATGCTCACTACCGGTATCATTCGTCCTAGCTCGAGCCCTTTCTCGTCACCAGTCCTCCTAGTCAAAAAGAAAGATGGTTCCTGGCGTTTTTGCACAGACTACAGAGCCCTCAATGCTGCAACAGTGAAAGATCGATTTCCAATCCCTACGGTGGAGGACATGCTCGATGAACTACACGGTGCAGCCTTCTTCACCAAGCTCGATCTAACTGCAGGGTATCACCAAGTCAGGATGCACCCGCAAGATGTTCACAAAACGGCTTTTCGTACACATAGTGGACATTACGAATATCTGGTAATGCCCTTTGGCCTCTGTAACGCACCATCTACCTTTCAGTCTCTTATGAACGATATCTTCCGACCTCTGATGCGCAAGTCAGTATTGGTATTCTTCGACGATATACTTATCTACAGTCCGACATGGGCAACACACCTACAGCATGTTCGTGAGGTTCTCAACATCATTCGTCAACACCAACTCTCGGTTAAACTGAAGAAGTGTGAGTTTGGGAAACAAGAGTTGGAATATTTGGGCCATATCATCACACACACAGGAGTAAAAGTGGACTGCTCCAAGATCAAAGCTATGACGGATTGGCCAGTTCCAACATCAGTAACAGACCTCCGAGGCTTCCTCGGCCTCACCGGCTATTATCGCAAATTTGTGCGGGACTATGGAATCATCGCTCGACCACTGACCAACCTATTGCGCAAAGGAAAGTTCGTGTGGGATGATCCAGCTGCAGAATCATTCCAGAAACTGAAGGTTGCAATGACTACTACTCCAACTCTGGCGCTTCCCAACTTCTCTCAGCCATTTGTGATTGAAACCGATGCGTCAGGAGAAGGTATTGGTGCTGTCCTCTCTCAGAATCATCAACCCATTGCTTTTATGAGCAGATCTCTCGGGCCTACTAAAAGATCTTGGTCTACATATGCTCGTGAGATGTTGGCTATCATTGTAGCAATACGGACATGGCGACCATACTTACTTGGGCGTAAGTTCACCATACAGACTGACCAACGAAGCCTTCGGTACATGCTTGAGCAACGCATCCTCACTCCTGAACAACAAAAATGGATGAGTAAGCTGGTGGGATATGACTACGACATCGTCTATAAGCCAGGT

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

538

Start:

6813237  

End:

6813774

Strand:

+

>R1_LTR-Gypsy_16

ACCATGTCTCCAGCCGGCCTTCTCCAGCCATTACCAATACCGGAACAACTGTGGGAAGATGTCTCAATGGACTTTGTCGATGGCTTACCAAAATCGCAAGGTTACACGTCTATCATGGTCATCGTCGATCGGTTAACAAAATCAGCACACTTGGTCCCTCTATCGCATCCTTACACAGCTGCATTGGTCGCTACAAAGTTCGTGGAATATGTTGTCAAGCTCCATGGTCTGCCAAGGTCTATTCTCAGTGATCGGGATCCTATCTTCCTCAGTAACTTCTGGAAAGAACTCTGGAAAATGCAGGGCACAACACTTCGCATGTCTTCCGCTTACCACCCACAAACAGACGGTCAAACCGAGGTGGTGAACAGATGCATCGAACAGTTCTTGCGATGTTTTGTGCAGCACAAACCGAAGCAGTGGAGCTCTTTCCTACCTTGGGCTGAGTACTGGTACAACACAAGCTTCCACTCCAGCACTGGTACAACCCCATTCCATGCTCTCTACGGACGACCCCCACCATCTTTGCCAAGGTATG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

227

Start:

6813876  

End:

6814102

Strand:

+

>R1_LTR-Gypsy_17

ATGAAGCAACAAGCTGATCGTAAGCGCCGTGATGTGGAATTTGAAGTAGATGAATGGGTCTTCTTGCGGTTACAGCCTTACAGACAGAAGTCAGTGTTCAAAAGATCCTCGCAGAAGTTGGCAAACCGTTTTTTCGGTCCTTTCCAAGTTGAGAAGCGCATTGGACAGGTTGCTTATCGGCTCAAGTTACCTAAAGGAGCTAAAATTCATCCGGTGTTCCATGTCTC

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

134

Start:

6814236  

End:

6814369

Strand:

+

>R1_LTR-Gypsy_18

GTCACTGAAGTATTGGTGCAATGGAAAGGGTTGACTATAGAAGAAGCAACATGGGAGGATTATTTTCAACTCAAGGTTAGCTTTCCACACTTTAATGCGAACCTTGAGGGCAAGGTTCTTTTGGACCGTGGGAG

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

94

Start:

7378934  

End:

7379027

Strand:

-

>R1_LTR-Gypsy_19

TACTTGGTTCAGACATTTTATCAAACACCTTGTGGGTGGGAAATGCCTAGAGCTCTAGATCAAAGATGCCAATTTTAATCTAGCATTAAGAATA

Raphanus sativus (v1.0)

ID:

R1_LTR-Gypsy_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Gypsy

Length:

372

Start:

7477904  

End:

7478275

Strand:

+

>R1_LTR-Gypsy_20

AGTTAAAGACTATTTCGTTACAGTCTTTTTATGGGATTGATTCTCCTACTACAACAAAATTAAAAGGGATCATCAAGAAACATACTATGGTGGTCATGTTGGATAGTGGGGCTACTCATAACTTCATCTCCCCAATGATGGTAGAGCAGTTGAAACTGAAGCTTGATAGAGCACAAGGCTTGGAAGTCTTGCTTGGTACGGGAGTCTCCGTGAATGGTACAGGAGTTTGCAGAAGTGTGCAGATAAATCTTCAAGGAGTGACTTTTACAACTGATTTTATCGTCTTGGACTTGGGAAATATTGATGTCATCCTGGGAATGCATTGGTTGAGAACTTTAGGAAAGTGCCAGATCGACTGGGAGAAACATGAAT