TBGR-Browse-Rsa-LINE.LINE-L1-Tx1

ID	Class	Order	Superfamily	Length	Start	End	Strand
R1_LINE-L1-Tx1_1	Retrotransposons	LINE	LINE-L1-Tx1	92	7816880	7816971	-
R1_LINE-L1-Tx1_2	Retrotransposons	LINE	LINE-L1-Tx1	96	13216405	13216500	-
R1_LINE-L1-Tx1_3	Retrotransposons	LINE	LINE-L1-Tx1	82	13711235	13711316	+
R1_LINE-L1-Tx1_4	Retrotransposons	LINE	LINE-L1-Tx1	150	18722962	18723111	-
R1_LINE-L1-Tx1_5	Retrotransposons	LINE	LINE-L1-Tx1	82	20375119	20375200	-
R2_LINE-L1-Tx1_6	Retrotransposons	LINE	LINE-L1-Tx1	89	141423	141511	+
R2_LINE-L1-Tx1_7	Retrotransposons	LINE	LINE-L1-Tx1	111	7279145	7279255	+
R2_LINE-L1-Tx1_8	Retrotransposons	LINE	LINE-L1-Tx1	96	10000852	10000947	-
R2_LINE-L1-Tx1_9	Retrotransposons	LINE	LINE-L1-Tx1	96	15227173	15227268	-
R2_LINE-L1-Tx1_10	Retrotransposons	LINE	LINE-L1-Tx1	82	18292210	18292291	+
R2_LINE-L1-Tx1_11	Retrotransposons	LINE	LINE-L1-Tx1	90	19050384	19050473	+
R3_LINE-L1-Tx1_12	Retrotransposons	LINE	LINE-L1-Tx1	84	3689061	3689144	+
R3_LINE-L1-Tx1_13	Retrotransposons	LINE	LINE-L1-Tx1	93	10880687	10880779	-
R3_LINE-L1-Tx1_14	Retrotransposons	LINE	LINE-L1-Tx1	138	14515861	14515998	+
R4_LINE-L1-Tx1_15	Retrotransposons	LINE	LINE-L1-Tx1	84	11052021	11052104	+
R4_LINE-L1-Tx1_16	Retrotransposons	LINE	LINE-L1-Tx1	116	19942207	19942322	+
R4_LINE-L1-Tx1_17	Retrotransposons	LINE	LINE-L1-Tx1	83	22245536	22245618	+
R5_LINE-L1-Tx1_18	Retrotransposons	LINE	LINE-L1-Tx1	102	12288530	12288631	+
R5_LINE-L1-Tx1_19	Retrotransposons	LINE	LINE-L1-Tx1	87	19815665	19815751	-
R5_LINE-L1-Tx1_20	Retrotransposons	LINE	LINE-L1-Tx1	99	39572407	39572505	-

Raphanus sativus (v1.0)

ID:

R1_LINE-L1-Tx1_1

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

92

Start:

7816880

End:

7816971

Strand:

-

>R1_LINE-L1-Tx1_1

AGAGAGAGAGAGAGAGAGAGAGACATTGACACAAAATTTACCATCCTTTTATTTTCCTCAAGATTGTCTCCTTGTTCTTCTTCTTCTCTCCA

Raphanus sativus (v1.0)

ID:

R1_LINE-L1-Tx1_2

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

96

Start:

13216405

End:

13216500

Strand:

-

>R1_LINE-L1-Tx1_2

TCTGTAGAATTCACAAGTGTATCCATCAGGTCCTGGAGATTTATTTCTTGCCATCTTAAAAATAACCTCCTTTATCTCCTCTGCAGTGACTTCCTG

Raphanus sativus (v1.0)

ID:

R1_LINE-L1-Tx1_3

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

13711235

End:

13711316

Strand:

+

>R1_LINE-L1-Tx1_3

CCATTCATCCGGATAAGGCTCCAGGCCCCGATGGTTTCTCCGCGAGTTTTTACCAATCCTTTTGGGACATTATAGGAGAGGA

Raphanus sativus (v1.0)

ID:

R1_LINE-L1-Tx1_4

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

150

Start:

18722962

End:

18723111

Strand:

-

>R1_LINE-L1-Tx1_4

GACATTGTCAGTTATGAGCCTTCCTGGAATAAATGCAGATTGATTCTCTGTAATAATGATATCCAGCCAAGGTTTCAATCGCTCAGCTAATATTTTTGAGATGACTTTATACGCTACATTAGCTAAGCTAATAGGCCTGTAATCTTTAAT

Raphanus sativus (v1.0)

ID:

R1_LINE-L1-Tx1_5

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

20375119

End:

20375200

Strand:

-

>R1_LINE-L1-Tx1_5

AAAGGCTGACTGGGTTTCCGAGATCCTAGTAGGTAAAACCTTTTTTAATCTTTGGCATAAGACCTTAGATATTATTTTATAG

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_6

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

89

Start:

141423

End:

141511

Strand:

+

>R2_LINE-L1-Tx1_6

AAAATGGATGTTATTAGGAAGCACATTAACATCTTCTTGGCAGATTCAAATATATGTTCTTCAATGTCCTCTCTCTCTCTCTCTCTCTC

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_7

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

111

Start:

7279145

End:

7279255

Strand:

+

>R2_LINE-L1-Tx1_7

CTATAAAATAATATCTAAGGTCTTATGCCAAAGATTAAAAAAGGTTCTCCCACACTTGATATCGGAAACTCAGTCAGCTTTTGTGGCAGGAAGACAAATAACGGATAATAT

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_8

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

96

Start:

10000852

End:

10000947

Strand:

-

>R2_LINE-L1-Tx1_8

AATTCCTCCCCAAGTACAGACCAAGCAGCTCTGAAAAATTCAACAGGAAAACCATCAGACCCAGGAGTCTTGTTGTTTTTCATTCTCTGAAGACAT

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_9

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

96

Start:

15227173

End:

15227268

Strand:

-

>R2_LINE-L1-Tx1_9

GGTCTTTTATAGAGTCAAGAAAATATACTGTTAAAACATGATGTAAAGTTGAATCATTATTTCCAGAAAAGGCACACAAATGCTCCCTTTTGGTCC

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_10

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

82

Start:

18292210

End:

18292291

Strand:

+

>R2_LINE-L1-Tx1_10

ACTGATGAGGAAATAAAAGCAGCTTTCTTCTCAATGCCCAAATGCAAGGCGCCTGGCCCCGATGGTTTTCCTGCTGAATTTT

Raphanus sativus (v1.0)

ID:

R2_LINE-L1-Tx1_11

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

90

Start:

19050384

End:

19050473

Strand:

+

>R2_LINE-L1-Tx1_11

TAAAGTGGTGTCTAAAATTTTTGCCAATAGGCTCAAGGTGCTTTTCCGTGAACGATAAATGAGAATCAATCAGCATTCATCAAAGGGAGA

Raphanus sativus (v1.0)

ID:

R3_LINE-L1-Tx1_12

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

84

Start:

3689061

End:

3689144

Strand:

+

>R3_LINE-L1-Tx1_12

CTATAAAATAATCTCTAAAGTCTTATGCCAGAGATTAAAAAAGGTTTTACCTGATAGGATTTCGGAAACCCAGTCAGCCTTTGT

Raphanus sativus (v1.0)

ID:

R3_LINE-L1-Tx1_13

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

93

Start:

10880687

End:

10880779

Strand:

-

>R3_LINE-L1-Tx1_13

AAATCTTTGCCTATTATATGCCATGAAGCTTTGAAAAATTCTGTGGTAAACCCGTCAGGTCCAGGAGATTTATTGCTAGGCATCTTGAACAGC

Raphanus sativus (v1.0)

ID:

R3_LINE-L1-Tx1_14

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

138

Start:

14515861

End:

14515998

Strand:

+

>R3_LINE-L1-Tx1_14

GAGGAGGCTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGAGAGAAAGTCTTCGCCTTTCAATCTGCATTTCTGTTTCTGTTACCTTCCCTAAGTACTTTTGTTTGATCTTGTTTCAGTTTTATGTTTT

Raphanus sativus (v1.0)

ID:

R4_LINE-L1-Tx1_15

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

84

Start:

11052021

End:

11052104

Strand:

+

>R4_LINE-L1-Tx1_15

TGTTTTACAATTAAAAAAAAAAGAAAAACAGAAATGACATTTTGTGCAATATTTTACACCTCTATCACTCTCTCTCTCTCTCTC

Raphanus sativus (v1.0)

ID:

R4_LINE-L1-Tx1_16

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

116

Start:

19942207

End:

19942322

Strand:

+

>R4_LINE-L1-Tx1_16

ACTTCTGATGAGATCAAGACAGTGCTGTTCGCGATGCCTAATGAGAAATCACCGGGGCCAGACGGCTATACTACATAATTTTACAAGGCATCATGGCCTATTATTGGAGCTGATTT

Raphanus sativus (v1.0)

ID:

R4_LINE-L1-Tx1_17

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

83

Start:

22245536

End:

22245618

Strand:

+

>R4_LINE-L1-Tx1_17

AAATCTCCGGGACCAGATGGGTTCAATGCAGAATTTTATAAATCCTCATGGGAGATTATTGGAGCAGAATTTATTATCGCTGT

Raphanus sativus (v1.0)

ID:

R5_LINE-L1-Tx1_18

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

102

Start:

12288530

End:

12288631

Strand:

+

>R5_LINE-L1-Tx1_18

CTACAAAATAATATCTAAGGTCTTATGCCAAAGATTAAAAAAGGTTTTACCTAATAGGATCTCGGAAACCCAGTCAGCCTTTGTTGCTGGAAGACAAATCTC

Raphanus sativus (v1.0)

ID:

R5_LINE-L1-Tx1_19

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

87

Start:

19815665

End:

19815751

Strand:

-

>R5_LINE-L1-Tx1_19

GCTCTCTTTAGCAAGTAGGATAAGCAGTTCATAGCGATAACGAATAGGTAGGGGGACAGTGGGTCTCCCTGCCTTAGCCCTCTCCTC

Raphanus sativus (v1.0)

ID:

R5_LINE-L1-Tx1_20

Class:

Retrotransposons

Order:

LINE

Superfamily:

LINE-L1-Tx1

Length:

99

Start:

39572407

End:

39572505

Strand:

-

>R5_LINE-L1-Tx1_20

AAATCGCGCTTTTTGGGATGAGGAGTCTTTGCGCAATTAATAAAAAGAAAAGAAGAGAGCTTTTTCCTTCTCCGGCGGCTACTTTAACTTGGTCGTCCC