ID Class Order Superfamily Length Start End Strand View
Scaffold12134_SINE_1 RetrotransposonsSINESINE14827542901-
Scaffold12134_SINE_2 RetrotransposonsSINESINE19495149707-
Scaffold16851_SINE_3 RetrotransposonsSINESINE304248551-
Scaffold16851_SINE_4 RetrotransposonsSINESINE309668976-
Scaffold16851_SINE_5 RetrotransposonsSINESINE25719102166-
Scaffold17160_SINE_6 RetrotransposonsSINESINE142287428+
Scaffold17160_SINE_7 RetrotransposonsSINESINE6909181607+
Scaffold17160_SINE_8 RetrotransposonsSINESINE30920912399+
Scaffold17160_SINE_9 RetrotransposonsSINESINE30724612767+
Scaffold17160_SINE_10 RetrotransposonsSINESINE30435553858+
Scaffold17160_SINE_11 RetrotransposonsSINESINE30938934201+
Scaffold17160_SINE_12 RetrotransposonsSINESINE69542844978+
Scaffold18711_SINE_13 RetrotransposonsSINESINE2858071091-
Scaffold19865_SINE_14 RetrotransposonsSINESINE290284573-
Scaffold19865_SINE_15 RetrotransposonsSINESINE59012931882-
Scaffold19865_SINE_16 RetrotransposonsSINESINE20222472448-
Scaffold22404_SINE_17 RetrotransposonsSINESINE138588725+
Scaffold22404_SINE_18 RetrotransposonsSINESINE205698902+
Scaffold22404_SINE_19 RetrotransposonsSINESINE25511531407+
Scaffold22404_SINE_20 RetrotransposonsSINESINE21213801591+

< 1 2 > Total 2


Capsella grandiflora (v1.1)

ID:

Scaffold12134_SINE_1

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

148

Start:

2754  

End:

2901

Strand:

-

>Scaffold12134_SINE_1

CTTGACATCAATTCTAAGGCTAGAGCTCGCAAACCCCGCCGCAAATGGTCACTGAGATCAAACCCAACTCGGAACTTTCCTTTTGGAAAAGGAAGATCCGTCACAACCAGAGATCCAATAGCTTCTTCTCCCCGACCTAGCAAAAAGA

Capsella grandiflora (v1.1)

ID:

Scaffold12134_SINE_2

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

194

Start:

9514  

End:

9707

Strand:

-

>Scaffold12134_SINE_2

agcaaggacggctcgtttgcgactgagacttgacatcaattcttaggctagagctcgcgAACCCCACCGCAAACTGTCACTGAGATCGAACCCAACCCAGAACTTTTCTTTTGGAAGAGGAAGATCCGCCACAACCAGAGATCCAATAGCTTCTTCTCCCCGACCTTGCAAAAAGAAGCCTCGCAACAAACCCT

Capsella grandiflora (v1.1)

ID:

Scaffold16851_SINE_3

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

304

Start:

248  

End:

551

Strand:

-

>Scaffold16851_SINE_3

aaGGATACCCGTGGCTAGCCATCAATGATCTGGTTACATATAAACCGTTAATCTGTTCGCAAAGTGGTGAACCTACCGGTCTAAAGCTTAACTTCCATCGCAAGTAAGATCTACCGCTCACAAGccacttggccaAGAGAAATCCGATATAGATCCGCCATAGCCTTTAACCAGCATATCGTAGGAATCTCACGTCGTCGTGAAAGAGAGAAATCGTCTGGCATCGAACGATAGATCCAACCATGCCTTACACCACCATAGAAGAGAAGCGCCCACCACCTGctttattccctgcccatcatcc

Capsella grandiflora (v1.1)

ID:

Scaffold16851_SINE_4

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

309

Start:

668  

End:

976

Strand:

-

>Scaffold16851_SINE_4

aaggatacccatgactAGCCATCAAGTATCTGGTCACAGATCAACCGTTAATCTGTTCGCAAAGTGTTGAACCGACCGGTCTGAAGCTCAACTTCCGCTGCAAGTAAGATCTACCGCTCGCAAGCCACTTAGCCAAGAGAAATCCGATATAGATCCGCCATAGCCTTTAAccagcagatcgccggaacatcatcccatgtcgccgtgaaagagagaaatcgtctggcaTCGAACGACAGATCCAACCATGCCTTACACCACCATAGAAGAGAAGCGTCGACAACCTGCTTTAATCCCTGCCCATCAGCC

Capsella grandiflora (v1.1)

ID:

Scaffold16851_SINE_5

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

257

Start:

1910  

End:

2166

Strand:

-

>Scaffold16851_SINE_5

GAAAAGAGATTTGAAATAGGGCAGTACACCAGAAACACAATTTATCTGCTAAATCCGACGCTAGTAAGGAcggctcgtttgcgactaaaacatgacatcaattcttaggttagagctcgcgaaccccaccgcaaagcgtcattgtgaTCAAACCTAACCCGCAACTTTCCTTTTGGAAAAGGAAGATCCGCCACAACTAGAGAGCCAATAAGCTTCTTCTCCCCGACCTAGCAAAAAGAAGCGTCGCAACAAACCCT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_6

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

142

Start:

287  

End:

428

Strand:

+

>Scaffold17160_SINE_6

TCTCTTCTTTCTTGGTGTAAGGCATGGTTGGATTTGTCGTTCGATGCCAAACGAATTCTCTCTTTCACGGCGACCTGAGATGTTGTTCTTGCGATCTGCTCGTTAAAGGCTATGGCGGATCTATATCGGATTTCTCTTGGCT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_7

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

690

Start:

918  

End:

1607

Strand:

+

>Scaffold17160_SINE_7

gGCTGATGGGCATGGATTAAAGCAGGTGGTGGGCGGTTCTCTTCTTTCGTGGTGTAAGGCATGGTTGGATTTGTCGTTCAATTCCAGACGATTTCTCTCTTTCAAGGCGACCTGAGATGATGTTCTTGCGATCTGCTGGTTAAAGGCTCTggcggatctataccggatttctcttggccaagtggcttttgagcagtagatctgtcttgcggcggaagttgactttcagaCCGGTGGGTTCACCACTTTTCGAACAGATTAACGGTTGATCTGGGACCAGATCCTTGATGGCTAGTCACGGGTATCCTTAACCGCAATTTGATGTTTGATGGCTTGGTTGAGCTAGCGTCcatcctccaccGCCGTGATTGGTTTTCTGTTCGCCGGATCGGAAAAGAGGTTGCTTTAGAAGTAAAGGTAAGTGTGATACATTGGATCAGAAGGTTTGTTGCGAAGCTTCTTATTGCTAGGTTGGGGAGAAGAAGCTTATTGGCTCTCTAGTCGTAGCGGATCTTCCTTTTCCAAAACGAAAGTTCCGGGTTGGGTTTGATCTCAGTGacggtttgcggtggggttcgcgaggtctagcttaagtattgagttcaagtcttagtcgcaaacgagtcgccttgctAGCGTCGGATTTAGAAAATAAATTGTGTTTCCGGTGTACTACCCGTTTTCAAACCT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_8

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

309

Start:

2091  

End:

2399

Strand:

+

>Scaffold17160_SINE_8

ggctgatgggcagggattaaagcaggtggttggtgcttCTCTTCTTTGTTGGTGTAAGGCATGGTTAGATCTGTCGTTCGATGCCAGACGAATTCTCTCTTTCACGGCGACCtgagatgatgtTCTTGCGATCTGCTGGTTAAAGACTATGGCGGATCTATATCGGATTTCTCTTGGCTAAGTGGCTtatgagcggtAGATCTGTCTTGCGGCGGAAGTTGAGCTTCAGACCGCTGGGTTCACCACTTTGCAAACAGATTAACAGTTGATCTGTTAATAGATCCTTGATGGTGAGTCACGAGTATCCTT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_9

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

307

Start:

2461  

End:

2767

Strand:

+

>Scaffold17160_SINE_9

ggctgatgggcagggattaaagtaggtgggggcgcttctcttctatggtggtgtaaggcatgctTGGATCTGTCGTTCGATGCTAGACGATTTTTCTCTTTCACGGCGACCTGAGATGATGTTCCAGCGATCTGCTGGTTAAAGGCTATGGCATATCTATATCGGATTTCTCTTGGCTAAGTGGCttgtgagcggtagatcttacttgcggcggaagttgagcttcagaccgatgggttcaccacTTTGCGAACGGATTAACGGTTGATCTGTGACCAGATCCTTGATGGCTAGTCATGGGTATCCT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_10

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

304

Start:

3555  

End:

3858

Strand:

+

>Scaffold17160_SINE_10

GATGGGCAGGGAGTAAAGAAGGTGGTGGGCGCTTCTCTTCTATGGTGGtgtaaggcatgGTTGGATCTGTCGTTCGATGCTAAACGATTTCTCTATTTCACGGCGACCTGAGATGATATTCCTGCGATCTGCAGGTTAAAGGCTATGGCGGATCTATATCGGATTTCTCTTGGCTAAGTAGCTtgtgagcggtagattggtcttgcggcggaagttgactttcagaccggtgggtacaccactttttgaacagattaacggttgatctgtgaccagatccttgatggctagtcacgggtatcct

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_11

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

309

Start:

3893  

End:

4201

Strand:

+

>Scaffold17160_SINE_11

GGCTGATGGGCAGGGATTAAAGTAGGTGGGGGCGCTTCTCTTCTACGGTGGTGTAAGGCATGGTTGGATCTGTCGTTCGATGCCAGACGATTTTTTCTCTTTCACGGCGACCTGAGATGATGATCCAGCGATATTATGGTTAAAGGCTATGGCATATCTATATCGGATttctcttggctAAGTGGCTTGTGAGCGGTAGATCTTACTTGCGTCGGAAGTTGAGCTTCAGACCGGTGGGTTCACAACTTTGCGAATGGATTAACGGTTGATCTGTGACCAGATCCTTGATGGCTAGTCGTGGGTATCCTT

Capsella grandiflora (v1.1)

ID:

Scaffold17160_SINE_12

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

695

Start:

4284  

End:

4978

Strand:

+

>Scaffold17160_SINE_12

GGCTGATGGGCAGGGATTAAAGCAGGTGGTGGGTGCTTCTCTTCTATGATGGTGTAAGTCATGGTTGGATTTGTCGTTCGATGCTAGACGATTTCTCTCTTTCACGGCAACTTGAGATGATGTTCCTGCGATCTGCTGGTTAAAGGCTATGGCAGATCTATATCGGATTtctcttggctaagtggcctgtgagcggtagatctgtcttgcagcggaagttgactttcagaccgttgggttcacaattttccgtacagattaacggttgatgtgtgactagatccttgatggctagtcacgggtatccttaaccggatttttatggttgatggcttgcTTGAGCTAGCGTCCATCCTCCACCGCCGTGATTGGTTTTTTGTTCGCCGGGTTAGAAGGGAGGTTGCTTTGGAGTAATGGTAATTGTGATACGTTATTTCAGAGGTTTGTTGCGAGGCTTCTTTTTGCTAAGTTAGGGAGAAGAAGCTTATTCGCTCTCAGGTTGTGGCGGATCTTCCTTTTCCAAAAGGAAATTTCCTAGTTAGCTTTGATCTCAGTGACGGTTTGCGGTGGGGTTCACGAGCTCTAGCCTAAGAATTGATGTCAAGTTTTAGTCGCAAACGAGCCGTCCTTAATAGCGTCGGATTTAGCAGATAAATTGTTGTTCCGGTGTACTGCCCGTTTTCAAATCTCTTTTC

Capsella grandiflora (v1.1)

ID:

Scaffold18711_SINE_13

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

285

Start:

807  

End:

1091

Strand:

-

>Scaffold18711_SINE_13

GGATCTGGTCACAGATCTAGCGTTAATTTGTTCGCAAAGTGGTGAACTCACTGGTCTGAAGCGCAACTTCTGCCGCAAGACATATCTAccgctcacaagCCACTTAGCCAAGAGAAATCCGATCCAGATCCGCCATAGCCTTTAACCAGCAGATCGCAAtgacatcatctCAGGTCGCCGAGAAAGAGAGAAATCCTTTGGTATCGATCGACAGATCCAACCACGCCCTACACCACCATAGAAGAGAAGCgcccaccaccTGCTTTAATCCCTGCCCATCAGTCG

Capsella grandiflora (v1.1)

ID:

Scaffold19865_SINE_14

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

290

Start:

284  

End:

573

Strand:

-

>Scaffold19865_SINE_14

cacctactaaATTTGACGCTACCAATGATGGCTCGTTTGCGACTAAAACATCCCATCAATACTTAGGCGGGAGCTCGCGAACCCCACCGCAAACCGTCACTGAGATCATACTTACCTGGAACTTTCCTTTTGAAAAAGGTAGATCCGCCACAACCTGAGATCCAATAGCTTCTTCTTCTCGACCTAGCAAAAAGAAACCTCGCAACTATTCCTTCGATccggcgaagagaacatcaatcacggtggTGGAGGATGGACGCTAGCTCAAGCAAGCCATCAACCATCAAAAT

Capsella grandiflora (v1.1)

ID:

Scaffold19865_SINE_15

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

590

Start:

1293  

End:

1882

Strand:

-

>Scaffold19865_SINE_15

CTAAATCTGACGCTAGCAAGGACGGCTCGTTTGTGACTAAGACATGACATCAATTCTTAGGCTGGAGTTCGTGAGCCCCACCGCAAACCGTCATTGCGATCAAACCCAACCCGGAACTTTCCTTTtgggaaaggtagatccgccacaaccagagatctaatagcttcttctccgtgacctagcaaaaagaaacctcgtaactaaccctctaatccaacgaatcacacttacctttacttccaaagaaacctcccttccaatCAAGGCGGTGGAGGTTGGACGCTAGCTTAAGCAAGCCATCAACCATCAAAATCCGGTTAAGGATCCCCATGAATAGCCATCAAGGATCTAGTCACAGATCATCCGTTAATCAGTTCGCAAAGTGGTGAACCCACCGgtgtgaacctcAGCTTCCGCCGCAAGACAGATCTACATCTAACTAGCGAATTAGCCAAGAGAAATCCAATCCAGATCCGCCATAGCCTTCAACTAGCATATCCTTGGAACATCATCTAAGGTTGTTGTGAAAGGGAGAAATCGTCTTCATCGAAGGACATATCCAACCACGTCTTACACCACCATAGAAGAGA

Capsella grandiflora (v1.1)

ID:

Scaffold19865_SINE_16

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

202

Start:

2247  

End:

2448

Strand:

-

>Scaffold19865_SINE_16

CACCTACTAAATTCGACGTTAGCAAGGATAGCTCGTTTCCGACTAAGACATGCCATCAATACTTAGGCCGGAGCTCGCAAACCGTCACTGAGATCATACTAACCCGGAACTTTCCTTTTggaaaaggtagATCCGCCACAACCAGAGATCCAATAGCTTCTGCTTCCCGACCTAGGAAAATGAAACTTCGCAACTATTCCTT

Capsella grandiflora (v1.1)

ID:

Scaffold22404_SINE_17

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

138

Start:

588  

End:

725

Strand:

+

>Scaffold22404_SINE_17

TTCTCTTGACTAAGTGGCTTGTGAGCGATAGATCTGTCTTGCTGCGGAAAATGAGCTTCAAACCGGTGGgttcaccactttgcAAACAGAGTAACGGTTGATCTGTGACCAGATCCTTGATGGCTAGTTACGGGGATC

Capsella grandiflora (v1.1)

ID:

Scaffold22404_SINE_18

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

205

Start:

698  

End:

902

Strand:

+

>Scaffold22404_SINE_18

AGATCCTTGATGGCTAGTTACGGGGATCTATCTTTTCCAAGAGAAAAGTTCTAGGTTGGGTTTCATCTCGGTGACGGTTGCGGTTGGGTTCGCGAGCTCCAGCCTAAGAATTGGTGTCAAGTCTTAGtcgcaaacgagccgtccttgctagcgttggatttagcaggtaatttatgtttccggtgtactgcccgttttcagattt

Capsella grandiflora (v1.1)

ID:

Scaffold22404_SINE_19

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

255

Start:

1153  

End:

1407

Strand:

+

>Scaffold22404_SINE_19

GTGTAAAGCGTGGTTGGATGAGTCGTTCGATGCCAGAAGATTTCTCTCTTTCACGGCGACCTGAGATGATGTTCCTTCGATATTCTGGTTGAAGGCTATGGCGGATCTGGATAAGACTTCTCTTAGCTAAGTTGCATGTGAGCGATAGATATGTCTTTCTGCGGAAGTTGAGCTTCAAACCAGTGGGTTCACCACTTTGTGAACAGATTAACGGTTGATCTGTGACCAgatccttgatggctagttacggtgatc

Capsella grandiflora (v1.1)

ID:

Scaffold22404_SINE_20

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE

Length:

212

Start:

1380  

End:

1591

Strand:

+

>Scaffold22404_SINE_20

AgatccttgatggctagttacggtgatcgaCCTTTTCCAAGAGGAAAGTTCTAGGTTGGGTTTGATCACGGTGACGGTTTGCGGTGGGGTTCATGAGATCCTGCCTAACAATTGGTGTCAAGTCTTAGTCGCTAACGAGCCGTCCTTGCAAGCGTTGGATTTAGTAGGTAGTTTATGTTTCCGGCGTACTGCCTGTTTTCAGATCTCTTTTC