ID Class Order Superfamily Length Start End Strand View
Scaffold1031_LTR-Caulimovirus_1 RetrotransposonsLTRLTR-Caulimovirus3681061110978-
Scaffold1031_LTR-Caulimovirus_2 RetrotransposonsLTRLTR-Caulimovirus4281112011547-
Scaffold11520_LTR-Caulimovirus_3 RetrotransposonsLTRLTR-Caulimovirus8484131260-
Scaffold17235_LTR-Caulimovirus_4 RetrotransposonsLTRLTR-Caulimovirus4286433+
Scaffold21085_LTR-Caulimovirus_5 RetrotransposonsLTRLTR-Caulimovirus57639544529-
Scaffold21085_LTR-Caulimovirus_6 RetrotransposonsLTRLTR-Caulimovirus97246385609+
Scaffold21085_LTR-Caulimovirus_7 RetrotransposonsLTRLTR-Caulimovirus158957137301+
Scaffold2742_LTR-Caulimovirus_8 RetrotransposonsLTRLTR-Caulimovirus2492010320351+

< 1 > Total 1


Capsella grandiflora (v1.1)

ID:

Scaffold1031_LTR-Caulimovirus_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

368

Start:

10611  

End:

10978

Strand:

-

>Scaffold1031_LTR-Caulimovirus_1

TTCATTTGATTGGGCCTAGCTTTAGTTGGAATATGCTTTTCGTTGAAGTCTTTTCCGAAAGGTATTTCAACAATATGTTTTTTCCTCTCCTAGAATGCATTTGGAAGTTCATAGCATATTTGGGTTAAGAGTTCAGTTTCTATTTTTTTTTTAACTTTTTTATTATTTGTGGATCATGTAATTGTTGTTCTATTTGttggttttttaTTTCTTGTTATAAGTATAGAACATGTTTTTGTTTTCTATCTATTAGGTTTATAGATTTTTCTATTGTGGAATTCTGTAAAGGTAAAATTTCTTTTGTTTTCATTGGTGATAGAAATTCAAATATTATCTTTTCTCTTACAATTTTTGTAGTAATTCCTAGT

Capsella grandiflora (v1.1)

ID:

Scaffold1031_LTR-Caulimovirus_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

428

Start:

11120  

End:

11547

Strand:

-

>Scaffold1031_LTR-Caulimovirus_2

TAGAATTTTGTAGGAATTTATTCCCTCTATAATACAGTTATAATCAGCTCATTTATCTAAAAGTGCTATGGTTTCTAGTTTAAAATCATACCCAATGTGTAATgttattttcgtataccatttttgatagtttattttatttattatttggatatattcttcttcttatgttttctcATGTTTATCAGGGTTGCTTGTGGAGGGTTCATCCGTTGTTATGGGTTGAGATTGGTGGATTTTGGGTTCTATAAGAGCTAATCTAGCGTCTACTTGTAGTTGGTGAAGCTGATGTTAGTGAACTATTAGTTGTAATTCTTTTATTTGTGCTTTTAAATTttttacttctccttgcaattcACCGGTAGTTACTTGTTTAAACAGTGTTGGGGAAGGATACTTTTCTATTATTCTATTAAGACTAAATGGTT

Capsella grandiflora (v1.1)

ID:

Scaffold11520_LTR-Caulimovirus_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

848

Start:

413  

End:

1260

Strand:

-

>Scaffold11520_LTR-Caulimovirus_3

CCTTTTATATGATTGACATCAAACTTCCACTGTGAGAACCAACTTGCCCATCTGAGTAATTGAGATTGCGGAAGGACTTTCTGTTTGAACTGTATCATCTTCGGGAAAGAGGACATATCCATCTCGATAAGAAAATGTTGGCCTACTAGATgaaactcgaacttttcaattcctctcttcactgcaagaatctctttgtaggtcgaatggtaatgtctttcactttctTTGAAGGCGCCACTCTTATATCCGCATATATGTCTCTTTCCTTGTTCATCTTCCTCCAAGAGTACTGCTCCCCAGTAGCAGTCACTAGCATCTGTTTGTAGAATTCTTTTTCCTTTTGATGGGATcttcagtgctgGTAATGTCTTTGAGATTCTTTTTAACTCTTTCACTGCTTCTGTGCACTTCTGACTCCATGGTGGTGCATCTTTTCgtagttgagaagagagaacttctctgtactttgctaaaccgtggatgaagtccgccatatagttgacaatgcctaggaattgctgaaCTTGCTTGAATGTTAACTTTTCATCAGGAAATTCGTCAAGTTGGGTTGCAATGTGCGGCTGGAGATGATATTCTCCCTCTGAAATGTGCATACCCAAAAAGTCGATTTCTGTTTCTCCAATAACCATTTTCTTCTCTGAGAGCATGATTCCATATTGttgcacaatatcatggaatttcatcaataggacagTGTGGGAATCAATATCCGGAGAGAACAGTAGTATGTCGTCGATGTAGACCAGCGCATTCGGGAGGATTGGCTCAAAGATCTTTATCATGGCTTTCTGGAATAGAGAAGGAGCTACCTTTAATCCAAAAGG

Capsella grandiflora (v1.1)

ID:

Scaffold17235_LTR-Caulimovirus_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

428

Start:

6  

End:

433

Strand:

+

>Scaffold17235_LTR-Caulimovirus_4

GAAAAGGCTTACCGGTTGTAGCAAGAGTCGCTCTCCTCGACACCAGGTACAGAGAGTACCAACATGCATGCATAGCAACTATCCAGACGACGTTAAAtactggcactgtcttcgtgactcttttcccaaactttaacgtggctctagaagacccacaaatctgtcAGAACATGCAAATCCAGCTACAAATTACTGGTGCTCCACAAATCGGAAACACATATGCAGCAACCCTGCACCACCAaatggcgtataGAGTCCAGAATCATGCTATGGATTTAAGTCTTCCACGTGAAACTGAAGACGCTTTACTCATCCAACTTGAGTCACAACACAGTCCATCATGCATTCACATTCCAAGacaaatcccaagaagcgagttagtcaagctacttccagaatcatgggtaaCAAACTATGAAAAACTCCAT

Capsella grandiflora (v1.1)

ID:

Scaffold21085_LTR-Caulimovirus_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

576

Start:

3954  

End:

4529

Strand:

-

>Scaffold21085_LTR-Caulimovirus_5

ATTGGTTAAGGAGCATCGTTCCATGTTGTATTTTCTCCAACATTTGATCATGAATTCTCATACTAGTGATTAAGGCATGTCGGGTaggaatgttatGAGGTTATAATGCCATGATAGAATCTAGGGTATTCCCACATCGATGTGGAAAGCTACCTTGGGTAAAGGGCCGATCAGTTGGTGTTTTATTTGTTTAGTATAATAGGGTAGTGAAACTTTGGGTATTTGAGGTGGATATATGTCATTGGAgcggccgaacCAGTACCACCATTCATAGAACCATCCTGGTATTGTCTTGGGGCAATGGAAATCAAAAGAGAGGAACCAGGAGTGATCATAGGTTCGTAGGTAAAAAGTATTGAGAAAGACTTTTTGGTAATCTATGTAGGTAAATCTTGGTATATGATAACATGgtatgggaaatcttttgatgtgtggaggttaataaacccgagatcttgggGGTTGCATATTTTGAGTATTTTGCAAGTGGAGTAGGAGATGAGGTTTGGGGTTCTTTTTGCCCGTATGGTGGGTTATTTCAACTGAATTTGTATATACGAGAATGAATTCGTAAAA

Capsella grandiflora (v1.1)

ID:

Scaffold21085_LTR-Caulimovirus_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

972

Start:

4638  

End:

5609

Strand:

+

>Scaffold21085_LTR-Caulimovirus_6

GAAGCGTtgatagcataggtgttccaggctgtaagtcccgaaggcagtgagtccgttggtaagcccgtgcatcacccgtcgtcgataAGAACGGTTAGTTTACATTTTAGCATGAGTTTAAGAATACTTTAGACATGGCACTTACGGTTAAAAAGTTGTTTAAGTCTAAACATGCatcatcctctACATCTCAAAAAACAATTAATTCAAGAGCAATCATGTCAAAAATTAAAACTTTCAATCGAGAAATATCAAATGACCAACTACCACATATTAGTCCAGAAAATATATATCaaagaggaacttttgattttaaaatagtgtattcaataaaagaacatgaacaaaatTTATCTTTACAAAAATGAATTTGAAGAAATTAAGTTACATTCTTCTATGGCTTTAGAAAATTATAAAAGAAAGAAATTTAGTTATAATTATAAAAGAAAGAAATTTAATTATATTCATTTTGGTCTAATACAAATagcaataaaacctttattcAGAACGACGATAGATTCTCCAATACTAATGTTATTAAGAGATAAAAATCTTTTAAAGTTTGAGGACTCCTTGTTAGGAGCTGTACAATCAAACTCATGTAACAGAGCTATATACTTTAATTGTGCTCcgaagtttcaagtaagtttacatgacccaacaatattcaatactTTAGTTTTAAACGTACACTTGCTTGAAATTAAATTTCAGCAAGAAAGACATGGGTCTTTATTGTTGTATCAGATTTACTTTAAGCAATCTAcatctgagtctAATCCTCGATGTTTGTTGCAAGATGACAAAGGCGAAACAACAATATTAgctgtacatagTAAAGATACTCCAACCTCTACCTATACACCTAAACAATTAAAATGAACAGAAATAACAATCCCTGATCAATGGAAAATTAATATTACTCAACCACCGAGAAACTTTGAACAAAGAACTATTACAAGTATAACAGAA

Capsella grandiflora (v1.1)

ID:

Scaffold21085_LTR-Caulimovirus_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1589

Start:

5713  

End:

7301

Strand:

+

>Scaffold21085_LTR-Caulimovirus_7

AACAAAAACCAAGAGAAAAAACCcattaactttcAAGCACCAATAGCTGAACCAATTCAACCATCATAGGTAGGGTCGTCTAACTTTCCTACTTTTCCAACTCCTTCAGATTTTAAATCAATAAATGTTATTTTGAAAGTATTTACGATAGATAAGCATTATCTTAAAGAAGAATTTTTATCACATCAAAATAAAGATAAAAGAAATAGTACTTTGAAACTTTTACTAAAGAATTACTTacaacttttagagaaatatggtacagtcacatggaaattatagaaataattattccattttttacatgGTTTGAAACCTACGCTTTAGAAAACAAAATAGACTACCCATATAAAGATAGATCAATAAACACTAGTTCAACCTTATGTCATACGTGGGAAATGACTAACTAGAAAACACATAAATCAGTCCATCCACCGttaatggatatAAAAATTCACACTCCTCAAACACAAGTAATAGCTACACCTTTTAGAAATTGAGCAACCAGAGATGATAGAGATTCAATAAATATGGCTGACATTAAAAtagtatatgaacaaaataattaccaaagtcaaaaactacatagtatttcacggaaAGTTGATCATATAGATAACAAATTAGATAAAGACAAATTTTTTTAATAACAAACTATAAACCATTGTTACCACCTTTTAACACAATATCACCACCCCTTTTTAAACAATtgactaaaccattaaattcccagaaaatgaaattttaaaatcaatttcaagtagactagatagactagacaaaggtaagggtataaacaatattgataaaaataTTCAGTCTGAAACCGATATAGAAATAAATTGAATAAAAAGAAACTACTAGCAATCCAAAAAACCATATTATCCAAGACACTCTTCACCCGACCTATTATTTGAAGAGCATAATAAATTTCTCTCCACAAACTTTTATAACGGGGAAAGGATATATGAATGGAACATAGATGGAAGGTCCAAATATGAAATAATGGACTTTTTTTttaagaaatgggaatgGCTACCTTAGCTTATAAATCTAAAGGAATGTCAGATAAACAAGCATGTCTGCTCTTAATCTCAAGGTTCAATGGTGCCTTAAAATTTTGGTGGGATAATGCCTTAGATATAACACCACAAGATTCTATTATAAACCATACTGAAACTATAAGAGTAGAAGGGGATGATGGTTTTTATGAGGAAGAACAAATTCAAAATGCTGTTGAACTATTACTTCAGACAATCACCATGCATTTCGTAGGTAATCCTTCTGAAGAACTTACAAGTAAAAAACTTATTTTAACAAACCTTAGATGTCCAACACTAGGAGACTTTAAATGgtataaagacATATTTATAACAAACATATTTCAAAGAATCGACTGCAACCAACCCTTCTCGAAAGAAAGGTTCATTGCAGGATTACATTCGTTCTTTGCAGAACGATTAAttagtaaactAAAAGATTTTTCTGGCGGACAACTGGTACCTTGGGATACCATAACTTATGGTCAGTTGGTTGTCTTTGTTAAAAAGGAAGGATTACAAATATGTCAAGAACATAAAGATAAACAA

Capsella grandiflora (v1.1)

ID:

Scaffold2742_LTR-Caulimovirus_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

249

Start:

20103  

End:

20351

Strand:

+

>Scaffold2742_LTR-Caulimovirus_8

ggcatatatgcggatacaagagtggcgctttcaaagacagtgaaaggcattaccatttgacctacaaagagattctcgtaGTAAAAAGAGGAATTGAAACATTCGAGTTCCATCTAGTTGGTCAACATTTTCTCATCGAGATGGATATGTCATCTTTCCCAAAGATAATACAGTTCAAACAGAAAGTCCGCCCACAGTCACAATTAATCTGATAGGCAAGGTTGTTCTCACAGTGAAAGTTTGACGTCA