ID Class Order Superfamily Length Start End Strand View
Scaffold10040_LTR_1 RetrotransposonsLTRLTR1635411754279-
Scaffold10040_LTR_2 RetrotransposonsLTRLTR616576035576650+
Scaffold10040_LTR_3 RetrotransposonsLTRLTR3972577136581107+
Scaffold10040_LTR_4 RetrotransposonsLTRLTR169215465871548278-
Scaffold10199_LTR_5 RetrotransposonsLTRLTR881831318400-
Scaffold10199_LTR_6 RetrotransposonsLTRLTR86858810858895-
Scaffold1040_LTR_7 RetrotransposonsLTRLTR5095912849917943-
Scaffold1040_LTR_8 RetrotransposonsLTRLTR147967417967563-
Scaffold11886_LTR_9 RetrotransposonsLTRLTR5701426514834+
Scaffold12302_LTR_10 RetrotransposonsLTRLTR206134144134349+
Scaffold12302_LTR_11 RetrotransposonsLTRLTR578135058135635+
Scaffold12302_LTR_12 RetrotransposonsLTRLTR3323290008293330+
Scaffold12302_LTR_13 RetrotransposonsLTRLTR1673353082354754-
Scaffold12302_LTR_14 RetrotransposonsLTRLTR578358305358882-
Scaffold12302_LTR_15 RetrotransposonsLTRLTR1001358894359894-
Scaffold12302_LTR_16 RetrotransposonsLTRLTR1189359897361085-
Scaffold12302_LTR_17 RetrotransposonsLTRLTR688361562362249-
Scaffold12302_LTR_18 RetrotransposonsLTRLTR3266376894380159-
Scaffold12302_LTR_19 RetrotransposonsLTRLTR798392209393006-
Scaffold12302_LTR_20 RetrotransposonsLTRLTR2582396486399067-

< 1 2 3 4 5 > Total 13


Boechera stricta (v1.2)

ID:

Scaffold10040_LTR_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

163

Start:

54117  

End:

54279

Strand:

-

>Scaffold10040_LTR_1

ATATTATTCAAAAAATGTTAAGGGAAATATTGATAAAAAATCAACAAATATTTATCCCATAAATATTATCTTAGTGGGCCTAAAACCCCACATTCACCAAGACCCAAAGCTCGAGCCCGGCTTGCTTATGTGTGTGTTTTGCATAATGGTCCTCTCACTCCTT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

616

Start:

576035  

End:

576650

Strand:

+

>Scaffold10040_LTR_2

AGATGCATTAAGGTTGCATTTATTCCCGTTTTCACTTAGAGGTGACGCGCATGAGTGGGAGAGGAAAATCCCATCAAAAACTATTACGACGTGGAGTCAATGCCAGAAAGCATTCTTGAAGAAGTTCTACTGTAACGCTAGGACAGCTTATTGGAAAAACAAGAAATCAAACTTCACGCAACAAAACACCGAACACTTTAGTGAAGCTTGGAAGAGGATTGTAGAATACACCAGACAATGGCTTCATCACGGATTTAGGGACGAATGCTTGCGGAGCATGTTTTACAGAGGAATCACTCGTAAACATTGTATGATGCTAGATGTTGGTGGTTGTAGACGTTTCTTGGGACAAGACGCACACCAAGGGAGAACATTAGTGGAGAATCTAGACGAGAGTGAAGCATCTTATAGAGAAGACTACAATCAAGGAGACATCTGTGAAGATGAGAAAAAGGCGACCATCAATGCACTGCTCGAAAAATTAGACAAGATTCTGGAATCGACGCAATAGTTTGCAGCATCAACGCCACATAGAGGAAAATGACATCGACCAGAGAGGATCGATGGCCACTCCAGAAGCATCGTCGAATGGGAGCGTCGACTCTACCATGTCGAT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

3972

Start:

577136  

End:

581107

Strand:

+

>Scaffold10040_LTR_3

AGACCAATCATTGCGACAGAAGGCCAAATCATGGAAAAGGGAGATACAACCCTCGAGAAAGAAAACCCTTTTGAATTTGAAGAAGAGCCCAAAGCTAAGGAGATAATCACTGAGATGTGGAAAGAGACTAAGGAGCCCAACGCTGATACAACCGACATTCGTGTAAGAGAGTCCAACACTAGTGTGAGGAGTCAAGTGATGTCTGAACTGCCCAAATATCATCCGAAAATCCCTTTTCCGAGAAGAATTAAAGGAAGAATCGTGGACAGGATGCGGAACACATTCGAAAAACAAATGGAGTAATCATCACTATGTCGATACTTGAAGCCTTGATGATGATTCCTAATGCCAGCAAGTTCCTCAAGAATCTCATAACTAATAAGAAAAAGGAACTAACCAAAGTAGCATTCCTAACGCACGAGTGTAGCGCCATTATTCTTGACAAAAAGATTCCGGAGAAGTTAGACGATCCGGGTAGCTTCACTCTTTCATGCACCCTCGGTCAGATAACCTTCAGGAGATCTTTATGTGATCATGGGGCTTGTGTGAATCTCATGCCTCTTTCCATCGCGAGAATGCTGGGACTAACTAATTTCAAGGAATGTAGGATGTCACTTGGTCTCGCCAATCGTTCGATAAAAACACCGATAAGGTTGCTTGAAGTCATCCCAGTGATGATTGAAGAATACCAAATTCCGACCAACGTCAATATACTCAAAATGGATCACGAGCCTAGGGATCCACTCATCCTAGAAAGACCATTCCTAGCAACCGCGGGAGCCATCATCAATGTTAAAAATGGAAAAATTGACCTTCACTTGAACGATGAAGTTATGCGTTTTAACTTCGATGAGGTGATGAAGAAACGTGAGGAGTGAGATCGTATCTTCTACCTAGATGATCTCGACCTACTAGCTGATGATATGACAAATAAAGTTAGTGATGCAGTACTAACCGAAGAACTTCAAAAACCACAAATCGAAGAAATGGCGGAGATGATACCATGAGAAATGGCTTATGCAATGATGACTGATCATGACAAAGAAGCAGCCACAGATGAAACAAGCAAGGGTAAGGCTTGTGAGGACAACGATTGGAGCGAACTCCAAGCACCAAAAGTGGAGTTGAAACCACTACCGAAAGGTCTAAGGTACGCATTTTAGGACCGAACTCGACTTATCCTGTCATCATAAGTGATGAGCTTAATAACGATGAAACTGATATGTCGCTTAAAGAATTAAGAAAGTATATAAAAGCCAAAGGATATTCTCTAGATGATATAAAAGGAATATCTTCATCTTTATGCATGCATAGGATACATTTAGAAGATGAATCTAAAAATTCTATGAAACCTCAGAGACGTTTAACCCAAACTTAAGAGATGTTGTTAGAAAAGAGATTCGTAAACTTCTAGATGCAGGTGTTATTTACCCTATTTCTGATAGCAACTGGTTTCGTCTGTTCATGTAGTTCCTAAGAAGGGTGGTATCACCGTAATAAAAAAATTAAAATGATGAATTAATTTCTACTAGGACTATAATGGAACATAGAATGTGTATAGATTTTAGGAAATTAAATACCGCAACTAGAAAATATCATTTTCCTCTCCCATTTATTGAACAAATGTTAGAACGGTTAGCATGTCATTCTCACTATTATTTTCTAGATGGGTTTTCAGGATTCTTTCAAATCCCGATTCATCCCATGATCAAGAAAAAACGACATTTACCTATCCGTATGGCACTTTTGCTTATCGAAAAGATGCCATTCGGGCTATGTAATGCACCTGTAACTTTTCAACGGTGTATGATGTCGATATTTTCAGACTTAAATGAATCAGTAGTGGAAGTGTTTATGGACAATTTCTCTGTATATGGCTCTTCGTTTGCTGGTTGTTTGTCTAATTTATGCAAGGTACTTAAACGCTGGGAAGAGACAAATCTTGTGCTAAATTGGGAGAAATGTCATTTCATGGTAAAAGAGGGAATCGTTCTTGGGCACAAGATCTCGGAGAGAAGAATTGAAGTTGACAAGGCAAAAATTGATGTGATGACAAGTTTAGGACCTTCAAAAACGGTGAAGGATATACAAAGTTTTCTTGGCCATGCTGGATTTTATCGAAGATTCATCAAGGATTTCTCAAAAATAGCAAGACCACTAACTAGATTGTTGTGCAAGGAGGTGGCATTCAACTTTGATGACGAGTGTAGCAAAGCATTCCGATCACTTAAGAAAGAGTTGGTGAGTGCATCGATAGTACAACCGCCGGATTAGGGGTTACCGTTTGAAATCATGTGCGACTATGCGGTAGGAGCTGTACTCGGACAATTAAAGGATAAGAAGCTAAATGTCATCTATTATGCAAGTAGGACGCTAGACGAAGCACAAATCAATTACGCCACTACAGAGAAAGAGCTGTTGGCGATCGTGTTTGCTTTCAAAAAGTTCCGCCAATACTTAGTTGGGTCTAAGGTTGTTGTACACACTGATCATGCAGCACTAAGGTATCTACTGGCAAAGAAGGATGCAACACCAAGGGTACTCTATGGATACTACTTCTTCAAGAGTTCGATTTGGAGATAAAAGACAATAGAGGAATAGAAAACGGAGTAGCTTATTATCTTTCTCGATCGAGGCCGAGATACCTATTGACGATTCACTAccagaagagcAAGTCTACACTATTAGAGTACTTGTTGGCGAGCACTACCTCAACAAGGATCTGAAGAGCATCAACACCATCAAGAATAAATTGCCATGGTACACTGACATCGTCAACTATCTCGCTTGTGGAGAAAAACCGCCCGATCTTGTCAGATACCGTAAGAAAAAGTTCTACAAGGAGATAAACCGATACTATTGGGATGATCCGAACCTCTACatgctatgcaaGGATAAGATATATAGAAGATGTGTCCCAAAGAATGAAGTTCACGTGATTTTGATGGGATTCCATGGATCAACGTATGGAGGACATTTTGCTACTTTCAAGACGGTGGCTAAAGTTTTACAAGCTGAATTGTTGTGGCCAACTTTATTTAGAGATGCTCATCGATTCATCCTAGCttgtgatgcaTGTCAAAGAAGAGGAAACATAAGTCGAAGGAACGAGATGCCTAAAAACCCGATAATAGAGGTATAAGTCTTTGACGTGTGGGGCATCGATTTCATGGGACCATTCGCAAACTATCATGGTAATAACTACGTCGTAGTGGCGGTTGATTACGTATCTAAATGAGTAGAAGATGTGGCGAGTCCAACGAACAGCGCGAAGGTAGTTCTTAAACTTTTTAAGAGTATCATTTTCCCGTGTTTCGGAGTTCCGCGAGTGGTGATTAGCGACAGAGGAATGCACTTCATTAACAGAACTTTCGACAAACTCCTAAGGAAGCATGGCGTTAGACACAAAGTGGCAACGCCCTATCATCCTCAAAAAATTGGACAATTGGAGGTTTCAAATCTAGAGATCAAATCAATCTTGGAGAAGACGGTGAATATCTCACAAAAGGATTGGTCACTGAAGTTAGACGATGCTCTGTTGGCTTATTGAACAGCTTTCAAGACTCCCATTGGTACAACTCCTTTCAATCTTTTATATGGGAAGTCTTATCATTTGCCGGTTGAGCTCGAGTACAAGGCTATGTGGGCTGTCAAGATGCTGAACTATGACATAAAAACCGCTGTGGAGAAGCGCCTAACAAAACTGAACGAGCTAGACGAGATTCACCGAGACGCTTATGAGAATGCTCGGATATACAACAAGAAGACTAAGGCATTCCATGACAAGAGAATACTTCGAAGATAGTTCAGGGAAAACGATCAAGTTCTACTATTCAACTATCGTTTGAAGCTCTTTCCGGAAAAGCTCCGATCTCGTTGGTCAGGCCCCTTCAAGATAAAGTCTGTAACGCCTTACGGAGCTATATAACTATGGGGCAATAGTGGAGAGAACTTCAAGGTAAGCGGACAGTG

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1692

Start:

1546587  

End:

1548278

Strand:

-

>Scaffold10040_LTR_4

TTCCTCGAAATCTTTTTGTCGAGAATAACCGCACTAGACTCGTGTGTTAGGAATGCCACCTTGGTTAACTCCTTTTTCTTCTTAGTTATGAGATCCTTGAGGAACTTGCCGGCGTGGGGAATCATTGTCAAGGCTTCTAGTATAGGTATGGTGATGGTTAAACCATTCATTTGCTCCTCAAATGCGTTCCTCATTCTCTCTATTATCCTTTCCTTAATTCTTCCCGGAAAAAGAATCTTGGGTTGATATTTGGGTAGATCGAGAATCGCTTAACTCCTCTTTCGAGTATTAAGCTTCCTTGTACGAGTGTTGGGATCCTCATCCTTGTCCAGTTTCTCCTTAATGATTTCTTCAATCTCAGGCTCTTTCTCTAGTATAATGGGATCTTCCTTCTCGATGGTTGGATCTTCTTTCTCGATGTTAGCCTCTTCACTCTTTTTATTGAATAGTTGCTTTTGTGGAATCGGTATGGGTATGAGCTCCTTGCTACTCTTCAAGGTTATCGAATTGATCGTCGGTGTCTCCTCCATCGTCCTAGTTTCCAGCTTTTGATCTAAGTCTTCGAACCTCTCATCAAACTCGTGACACCGTTGATTAATTTCTTTGAATTCTACACTACTCCTTGTGACCATGCTTGTTTGCCCTTCTAAGACGTTTTGTACTATCTCCTCGAGGTTGTCCGCCTTAGTCGTCAAGAAATTATCCTCCTCATTGTTCTCAGCAAGAGCATCGACCACGCTTGGTCGATGTTCTGGTCCGATGTGAAAGGCATCGACCATGTACGATTGATGTGTTTGATCGATGTTAATCTCCGGTGTTGCATCAAAGGCATACGATCGATGCTTCTCTTCGATGATGCTTCTAAGAAGGCCATCGACCCCTCCTGGTCGATGGTGTTGTTCTCCACGTTGTTTTGATGAGACGAAGTGTTGCGTTGAATTCTGAATTCTGTCCACCTTTTCGTGTAGCGCTTCTATAGTCAGCTTTTCTTCATCTTCATGAATGTTGACGTGTATGCTCATTCGGTCGTAGTCCTCTCCATAGCTCACGTCACTTCCGGCTAGATTCTCCACCAACGTCTTGCTCCAAGAAAGTTCCATGGCTAGCTACGTCTAGTAGCATACGGTACTCAGGTTTAGCTCCTTGGTAGAAAATGCAAAGTAATGACTCATCGCTGAATCCATGATGGAGACATTGTTTGGTGTAGCCTACAAGTCTCTCCCACGCTTCTCCGAATCTCTCTATGCTTTGTTGTGTGAAGTTTGATATCTCGCTTCTCCAACGAGCTGTCATAAAGTTCGTGTATAACTTTTTCAGGAATGCTTTCCGGCATTGACTCCACGTTGTAACGGTCTCTGATGGAATGCACTTCTCCCACTCTTGTGCTTTACCCCCAAGTGAGAATGGGAATAAACGAAGTTTTTGTGCATCTTCAGAGAGACCATCTATTTTCACCAAGTCGCATAACTTGTCGAATTGATTTAGATGATCCGTTGATAAACCATGAAACTTATTGCCTTCGATCATCTTAATAAAGCTGATCAAGTCGAATTCAACATCCACCACCGGTGGTGGTCAGATTCCAAAGCGTGGAATGTAGCTTGTTGGCTCGTCGACCATGCCTATTGTACTTGTAGCCCTTAGTCTACGCATCACGTTCTCGTCTATTCAGTCCAGCAACTGGTTCATTTT

Boechera stricta (v1.2)

ID:

Scaffold10199_LTR_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

88

Start:

18313  

End:

18400

Strand:

-

>Scaffold10199_LTR_5

ACGGCGGCGACGGCGTGCGCATAGTTTTGCATAAAGGTCATCTATCTCTTGCACCATAGTGTCTTCTTCACAAACATAGTGAACCTTG

Boechera stricta (v1.2)

ID:

Scaffold10199_LTR_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

86

Start:

858810  

End:

858895

Strand:

-

>Scaffold10199_LTR_6

GCTCAACTTCGTCCAACACACCATCAACCAACAAGTCGAGATCGTCTATGTAGAAGATTGGGTCTTGTTCTTCGATTTTCTTTACC

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

5095

Start:

912849  

End:

917943

Strand:

-

>Scaffold1040_LTR_7

TGTCCGTTCACCTTGAAGCACTCTCCATTGTTATCCCATAGCTCTATAGCTCCGTAAGGTGTCATAGAATTGATCCTGAAAGGCCTGGACTAGTGAGATCGGAGTTTGCCCGAGAAGAGTCTTAAGCGGGAGTTGAAGAGTATAACTTGATCATTCTCCTTAAACTACCGTCTAAGTATCTTCTTGTCATGGAATGATTTAGTTTTCTCCTTGTATATTCGAGCATTCTCATAAGCATTAAGGCGAATCTCGTCTAGTTCGTTTGCGGCGGTCTTGATATCATAATTCAACATTTTTACGGCCCACATGGCTTTGTACTCTAGCTCCACCGGTAGATGACATGATTTTCCATAAAAAAGGTTGAAAGGAGTTGTACCAATGGGTGTCTTGAAGGCAGTTCTGTAAGCCCATAGAGCATCGTCTAGCTTTAAAGCCCAATCTTTTCGAGAAATATTCACCGTTTTTTCTAAGATTGCTTTGATTTCTCGATTCGAAACCTCCACTTGCCATTTGTTTGAGGGTGATATGGCGTTGCTACATTATGTTTTACACCATGTCGTCGAAGGAGCTTCTCAAAAGTTCTGTTAATGAAGTGCGTTCCTCCGTCGCTAATCACCACTCGCGGAACTCCAAATCGTGGGAATATGATGCTCTTAAAAAGTTTAAGAACTACCTTTGCGTCATTTGTTGGACTTGCTATAGCTTCCACCCATTTAGATACATAATCAACTGCTACTAAGATGTAGTAGTTGCCATGAGAGCATAGGAAAGGTCCCATAAAGTCGATGACCCACATATCGAAGACTTCAACTTCCATTATCTAGTTTTGAGGCATCTCGTTCCGTCAGCTTATATTTCCTTTTCTCTAACAAGCATCACAAGCTAGGATGAATTGGTGGGTATCTTTTAATAGAGTAGGCCACCAAAATCCAGCTTGTAGAACCTTTGATACCATTTTGAATGTAGCGAAATGACCTCCATATGTTGATCCATGGCACCTTGTCAGAATCCCTTGCATTTCGTTGTCTAGAACGCACCTTCTATAAATTTTATCCTTGCATAGTGTGTATAGGTGAGGATCGTCCCAATAGTACCTATTGATTTCCTTAAAAAAAATTTCTTGTGGTAGCCAACGAGATCAGGTGGTTTCTCTCCACAAGCGAGATAATTAACGATATCTGCGTACCATGGTGACTTCTCTTTGATAGCATCAATGCTCTTCAGCTCCTTGTCGAGATAGTGTTCTTGGACAAGCACCCTAATAGCGAAAACTTGCTCCTCTGGCAGTGAGTCACCAATCGGTATATCGTCTTTAATTCGCATTCTCGAAAGGTGATTAGCCACTCCATTCTCTATTCCTTCCTTATCTTTTATTTCCAAATCAAATTCTTGGAGGAGTAGTATCCAACGGAGTAATCTTGGTTTTGCATCCTTTTTGGCGAGAAGATATCGTAATGCAGTATGATCTGTATGAACGATGACTTTCGAGCCCACTAAGTATTGTCTGAATTTCTCAAAAGCAAAAACGATCGCTAGAAGTTCTTTCTCTGTAGTAGCATACTTCATTTGCGTCTCTATAGCGTTCTGCTTGCATAGTAGATAATATTCAGCTTCTTATCTTTTCGTTGTCCAAGAACGGCTCCTACTGCATAGTCATTAGCATCGCATATAATCTCGAATGGTAGTTCCCAATCTAGCGGTTGTACTATCGGTGCGCTTACCAGCTCCTTCTTGATCATTTGGAAAGCCTTGAGGCACTCATCGTCGAAACTGAATTCGACCTCCTTGCATAAGAGTCTTGTGAGAGGACGTGTTGTCTTAGAAAAATCTTTGATAAAATCCAGCATGTCCGAGGAACCTTCTATATCCTTCACCATTTTTGGAGGTCTAGGCTCATCATCACCTCGATCTTAGCTTTGTCAACCTCTATTTCTTTTTCTGAAATTTTGTGCCCAAGAACGATTCCTTCCTTTACCATGAAATGACACTTTTTCCAATTAAGCACGAGGTTTGTCTCTTCACAATGCTTGAGTACCTTGCATAAATTAGACAAAAAACCAAACGAAGAACCATACACAGCAAAATCATCCATAAACACCTCAACTACTGATTCGATTAAATCAGAGAAAATTGACATCATACACCTCTGAAAAGTTGCAGGTGCATTACATAATCCAAATGACATTCTTCGATAAGCAAATGTATCATAAGGACATGTAAATGTCGTTTTTTCTTGATCATGTGGGTGTATCGGAATTTGAAAAAATCTTGAATATCCATCTAAGAAACAATAGTGGGAGTGATTTGCTAATCGTTCTAACATTTGATCTATAAAAAGAAGATGGAAATGATCTTTTCTAGTTGCCGCATTTAATTTCCTAAAATCAATACACATCTTGTGTCCTGTGATAGTTCTAGTGGGGATTAATTCATCATTGTCATTTTTTATTACTGATATTCCATGTGCTATCGGAAATAGGGTATATAATTCCAGCATCTAAAAGTTTAAGAATTTCTTTTCTTACGACATCGCACAAATTTGGGTTCAAACGCCTTTGATGTTCAATGGAATTTTTAGTCTCatcttctagatGTATCCTATGCATGCATAAAGATGGAGATATTCCCTTAATATCCTCTAGAGAGTATCCTATAACTTTTTTATATTTTCTCAACTCACTAAGTAAAGCTGAGGTTTCAGCATCACTAAGCTCATCACTTATTATTACAAAATATGTTGAGTTAGGACCAAGAAATGCGTACCTTAGCCCTTTTGGAAGTGTCTTTAGCTCTACTTTAGGTGCTTTTAGCTCGCTCCAATCATCATCATCGCAAGAATTACCAATGCTTGCTGGTTCTATGATCTCCTCGTCTTGTCCGGTTAATTGTACAGAAAACATATCACGAGGTATCATTTTTGCCATTTCTCCATTTTGTAGCGTTTGAAGCTCTTCACATAGCTTCTCGTCTTTCAAAGCTATTTCAGCTAGAAAACTATCTGCCAGCAAATCGAGGTCGTCGATGTAGAAAAGACGATCTCGTTCCTCGGGCTTTTTCATCATTTCATCAATGTTAAACTGCATGACTTCATCATTTAGATGAAGATCAATTTTTCCATTCTTCACATCGATGATGGCTCCTGCGGTGGCTAGGAATGGCCTTCCTAGTATGAGTGGATTCTTGGGCTTTTGGTCCATCCTCAGTATCACAAAATCAGTTGGTATTTGATATTTTCCAACCATCACCGAGACGTCTTCAAGTAGTTCAACTGGTGTTTTGATTGACCGATCAGCGAGAACgagtgacattCGACATTCTTTGAATTGAGTGAATCCTAGCTTTTGTGCTATGGATATAGGCATGAGACTCACACTGGATCCAAGATCACATAGGGATTTTCCAAATGTCACGGTACCTAAAGTACACAAAAGAGTGAAACTTCCCGGATCATCTAATTTCTCTGAAATCTGTTTGTTAAGTATAACGGCACAACACTTGTGAGTTAGGAACACCACCTCGGTGTGCTCCCTTCTTCTTTTTAGTTGCGAGATCCTTGAGAAATTTGCTGGCATTAGGAATCATCGTCAAAGCATCTAGCATTGACATAATGATGATCACTCCTTTCATTTGTTCTTCAAAAGTATTCCTCATTCGATCCGCCATTCTCTTTTTTTATTCTTTCTGGAAAAGGAACCTTGGGTTGACAATTGGGTATATTCAGTACTGCCTAGCTCTTTTCGCGAAGTGGAGGTTCTTTGCTTGTATCTGGTCTCTCCTTAGTCATCTCTACAATCTCAGGTTCTTCTTCTACTATGATGGGATCTTCTTTCTCAAAATTAGTCTCCACGCTCTTCTTGTTGATCAGTTGCTTGGGTGGACTTGGTTTGAGCTCCTTTCCACTCTTCAAAGTAATGGCATTGATCGTTGGTGCATCTTCCGTTGCTCGAGTCTCCAACTTTTGAACTTTTAAAAATAATTCCTCAAACTTTTCGCTTAAATAGTCACATCTTCGATCAATGTTCTTGAATCCTTCACTAATCTCTGCACCCATTCTTGTCTGTCCATTCAAAACATATTGAATTTCTGCTCCAGATTTATCCATTTCGGTTGTTGAACAGCTTGCCTCACCATTGTAATTAGAAGGCATATCGACCGTGATAGGTCGATATTTTTGGTCGATCCACATGACATCGACCTCGTTTGGTCGATGGCGTTGGTCGATGTTATCTTCTGATTTTGCATCGAATATGTTTGGCCGATGCATGTGACCGATTCTTCTTTCTGGAAAATCTTCGACCTCATTTGGTTGACGGTGAGGTTCTTTTTGCTGACTCAAAATTCTGTCTATCTTCTCGTGCAGTGATTCTATGGTTCTTTTCTCCTCATCTTCATGGATGTCAACGCGTCTACTCGTGTGATCGTATTCATCTCCATGTCTCATGTCACTTTCAGCTAAGTTCTCCACCAATGTCATTCCATGTTGAGCTTCTTACCCCAAGAAAGTTCCATGGCTAGCTACGTTGAGTAGCATACGATACTTAGGCGTGACTCCTCTGTAGAAAATGCTTAGTAGAGACTCGTCAGAATCCATGATGAGGACATTGCATGGTGTATCCTCTCATTCTTTGCCATGCTTCTCCGAAGCTCTCAGTGTTTTGTTGCGTGAAGTTTGAAATCTCGTTTCTCCAACGAGCTGTCCTTGAGCTCGAAAAGAACTTTTTTAGGAAGACTTTTTTGCATTGACTCCACGTTGTAATGGTCTCTGATAGAAGGTATTTCTCCCATTGGCTTGCTCTACTTCCAAGTGAGAATGGAATTAGACGAAGTTTCAGTGCATCTTCAGAGATCCCATTAATCATAACCGTATCACATAGTTTATCAAACTGGATTTTCAGTTGATAAACCATGAAACTTGTTATCTTGAACCAAACGAATCAAATCGAACTTGATCTCAAATTCGACATTCTCCACGGTTGGACGGATTCCTATGCAGTGGCTGTGACTTGTTGGCTCGTCGGCCATGCCTATTGTCCGTACTGTTCTCTGCCTTCGTACAACATTCTTTTCTCCCCAGTCCAGCAACTAGTTCATCTTT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

147

Start:

967417  

End:

967563

Strand:

-

>Scaffold1040_LTR_8

CTCGCGGAACTCCGAAACACGGGAAAATGATGCTCTTAAAAAGTTTTAGAACTACCTTCGCATCGTTTgttggacacgCCACAACTTCTACCCATTTAGATACATAATCAACCGCCACTAAGCTGTAGTTGTTACCATGAGAGTTCG

Boechera stricta (v1.2)

ID:

Scaffold11886_LTR_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

570

Start:

14265  

End:

14834

Strand:

+

>Scaffold11886_LTR_9

GCTGATGGATCCGATGGACGAGAGAGTGAAGCATATGCTAAGGGCAATCAGAATAATCGGCATGGCCGATGAGCCAACTAGCCAATGCCACCGCACGGGCATCCGACCTTCATCTATGGGCGATGTCGATTTCGAAATCGAGATTGGCTTGATTAACATGATCTAGGGCGAAAAATTTCACGTCCTATCAATGGAGAATCCTATGGATCATCTGAATCAATTCGACAAGTTGTGCGAGTTGGTAAAAATAAATGGTGTCTCTGAAGATGCACTAAAACTTTGTCTATTTCCATTCTCACTTGGAAGTGGAGCACATCTGTGAGAAAAGCACCTTCCATCAGAGACCATTACAACGTGGAGTCAATGCCGCAAAGTATTCCTAAACAAGTTCTTCTCGAACTTTATGAAAGCTCGTTGGAAAAACGAGATATCAAACTTCACACAACGAAACACTGAGAGCTTTGGAGAAGCGTGGGAGAGACTTGTAGGCTACACCACGCAAGGTCCTCACCATGGATTTAGCGATGAGTATTTACTAAGTATTCTCTACCGAGGAGTGACACTGGAGTA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

206

Start:

134144  

End:

134349

Strand:

+

>Scaffold12302_LTR_10

TCACGAAAAACAGCATCACCAATCCATAGATACCGATGGTAATCCTGGAAAAATCAACGAACACCAACATCGACCAGAGCGTCGACTACACAAGATCGACGCCGATATATCAGGGAAGCTTGTCAAGGGGCAACATCGATCAGGAGAGATTGATGCTTTCTCAGATGGAAACATTGAGCAACACAATTGACCAGGAGCGGTCGATG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

578

Start:

135058  

End:

135635

Strand:

+

>Scaffold12302_LTR_11

CGTTCCTAACACATGAATGCAGCGCGGTTATCCTCGACAAAAAGATTTCAAAGAAATTAGACGATCCGGGCAGCTTCACTCTCTCTTGCAGTATAGGTCCAATAACATATGGGAGATCTCTATGTGATCTTGGAGCTAGTGTGAACCTCATGCCTCAGTccattgcaaaaaatttgggattcaatacattcaaagaatgtaggatgtcactcgttcTCGCCGATCGCTCGATAAAAATGCAGGTTGGATTACTCGAAGACATCCCGATGATGATTGGTGACTACCAAATTCCAACCGAGTTTGTGGTACTCAAGATGGATCACCAGCCTAAAGATCCACTCATCCTAGAGAGACCATTCCTAGCAACCGCGTGAGCCATCATCGATGTTAAAAACAGAAAaatcgaccttCACCTAAACGACGAAGTAATGCAGTTTACTATCAACGAGGTGATGAAAAAACCCAAGAAACGAGATCGTATCTTCTTCATAGATGGTGTGTTGGATGAAGATGAGCTCGAAAACGGAGAGCTAAGTGAGGAATTCCAAACGCTACCAAATGGAGACGTGGCGGACAtg

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

3323

Start:

290008  

End:

293330

Strand:

+

>Scaffold12302_LTR_12

CTATTGAAACCGAGGAAGAGCATGAGATTGAAGAAGTTATTAAGGAAAAGCTGGGCATGGATGGAGAGCCAAATACTCGTGGAAGGAGCCAGGTGACACTCGACGTACGTAATTATTAGCCTAAGATTCCTTTTCCGGGAAGGATCAAAGGGAGAATAGGGGTGAGAATGAGAAACGCATTTGAAGAACAAATAAAAGGTGTAATCATCACTATGCCGATACTAGAAGCTTTGGCGATGATTCCCAACACTAGCAAATTCCTCAAGGATCTCGTGACTAagaaaaagaaaGAGCTCACCGAGGTAGCATTCCTAACGCACAAGTGCAGCGCAGTTAGTCTCGACAAGAAAATTCCAAAGAAATTAGACGATCTGGGTAGCTTCACTCTCTCTTGCAATCTAGGTCCGATGATATTGGGAGATCTTTATGTGACCTTGGAGTTAGTGTgaaccttatgcCTCTATCCATTGCACAAAAGTTGTGATTTACAAAATTCAAGGAATATAGGATGTTAGTCGTTCTGCCGATTGCTTGATTGGTGACTACCAAATTCCAACTGATTTTGTGGTACTCAAGATGGATCACGAGcccaaagatccactcatcctagggagaccattcctagcaaccgcgggagccatcatcgatgttaaaaacggaaagatcaaccttcacctaaACGATGAAGTCATGTAGTTTAGTATCGATGAGGTGATGAAGAAACCCAAAGAACGAGATCGTATTTTCTAAATTGACGATCTCGACTTGCTAGCTAATGGCATATTAGATGAGGTTGAAcctaacgacgAGGACCTAAGTGAAGAATTCCAAACACTACAGAATGGAGACATGGTGGACATGATACCTCGAGAGATGGCTTATGTGAGTCTAACCGAGGGTGAAGAAGAAGAGGAAGCCACGCTAAAAGCAGGCGATGGTGAGACTTGCGACGAAGACGATTGGAGCGAGCTcaaagcaccaAAGGTGGAGCTGAAACCACTACCGAAAGGGCTAAGGTACGCGTTTCTCGGTCCTAATTCAACATATCcagtcataataAGTGATGAACTAAATGAAGATGAAACCTCGATGCTACTTAGTGAATTAAAAAAAATATAGGAAAGCCATAGGATAATCTTTAGATGATATCAAGGGAATATCCCcatccttatgcATGCATAGAATACATCTAGAAGATGAATTTAAAAATTTCATTGAACCGCAAAGACGTTTAAATCCAAATTTACGAGATGTAGTGCGAAAAAAAATTCTTAAACTTCTAGATGCGGGTGTTATTTATCCTATTTTCGATAGTAATTGGGTCTCACTTGTTCATGTTGTACCTAAAAAGGGTTGTATCACTGTGGTAAAAAATGAAaatgacgaatTAATTCCTACTAGAACTATCACGTGACATAGGATGTGTATTGATTTTAGGAAATTAATTGCTGCCATTAGAAAAGATCATTTTCCTCTTCCATTTATTGATCAAATGTTAGAATGACTAGCTAATCATTCTCACTATTGGTTTTTAGATGTGTATTCGAGATTTTTTCAAACCCCGATACACCCGCAAGATCAAGAAAAACGATATTTACATGTTCTTACGGTACATTTGCCTATCGAAGAATGCCGTTTGGGCTATGTAATGCACCTGCAACCTTTCAAAGGTGTATGATGTCGATATTTTTagatttaattgaatcagtagttaaggtgtttatggatgatttctctgtgtatggttcttcgtttggtggttgtttgtctaatttgtgcaaggtactaaaacgttgtgaagagacgaacctcgtacttaattgggagaagtgccatttcatggtgagagaaggaatcgttctcgggcataagatatcaaaaagagggattgaagtcgacaaggccaagatcgatgtgatgacaagtctagggcctccaaaaatggtgaaagacatacgaagtttccttggtcatgctaatttttatcgaagattcatcaaagatttttctaagatagcaagaccactcaccagcctgcTATGCAAGGATGTCGAGTTCAACTTCGATGACGCATGTTCCGAGGCATTCAGATCAATCAAGAAGGAGCTAGtgagtgcaccgATAGTACAACCGCCAGATTGAGAAGAATTGCCGTTCGAGATTATGTGGGACGCTAGCGATTATGCTGTGGGAGCTGTTCTTGGACAACGTAAAgataagaagcTGAATGTCATCTACTATGCGAGTAGGACACTAGATGAAACTTAGATGAAGTATGCCACCATTGAGAAGGAGCTTCTAGCGATCATATTTGCTTTTGAGAAATTTAGATAATATTTAGTCGGCTCAAAAGTCATAGTTCACACGGATCATGCAGCGTTCTGGTATTTACTAGCTACGAAGGATGCAAAACCAAGGCTAATTCGCTGGATACTACTCCTTCAAGAGTTCGAtttggagataaAAGATAAGAGAGGAATAGAGAACGGAGTAAGTGATCACCTTTCTCGAATGAGAATCACTGACAAGATTCCTATCGACGATTCACTACCGAAGGAGCAAGTCTATGCTATTAGAGTGCTTGTCGGTGAGCACAACCTCAACTAGTAGCTGAATAGCATTGATGCCATCAAAGAAAAATCACCATGGTACACTGACATCGTCAACTATCTCGCTTGTGGAGAGAAACCACCTAATCTTGTCGGATATCATAAGAAAAAAATTTTCAAGGAGATAAACCGGTATTATTGGGATGATCTGAAACTCTACACGCTGTGTAAGGATAAAATATATAGAAGatgtgttccgGAGCATGAGGTTCACAGGATTTTGACGGGATGCCAAGGATCAACATACGGAGGACATTTCGCTACATTCAAAACGGTGGCtaaagttttacAAGCTGGATTTTGGTGGCCGACTTTGTTTAGAGACGCTCATCGATTCATCCTAGCTTGCGATGCATGTCAAAGAGGAGGAAACATAAGTCAAAGGAACGAGACGCCTCAAAACCCGATAATGGAGGTAGAAgtctttgacgtGTGGGGCATCGATTTCATGGGACCTTTCTCAAGTTTCATGGTAACAACTACATCTTAGTGGTGATTGATTATGTATCTAAATGGGTAGAAGCTGTGGCGTGCCCAACAAACGATGTGAAGGTAGTTCTGAAACTTTTTAAAAGCATCATTTTCCAGCGTTTCGGAGTTCCGTGAGTGGTGATTAATGATGGAGGAACACACTTCATTAACAAAAATTTCGACAAACTCCTTAAACACAAGGAGTTTAGACACAAGGTGGCAACAACATATCATCCTTAAACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1673

Start:

353082  

End:

354754

Strand:

-

>Scaffold12302_LTR_13

TGTCCGTTCACCTTGAATCTCTCTCCACTGTTGCCCCATAGATCTATAGCTATGTAAGGAATTATAGACTTTATCTTGAACGATCTAGACCAACGAGATCGAAGCTTTCCTGGAAAGAGCTTCAAACGAGAGTTGAATAGtaaaacttgaTCGTTTTCCCGGAACTCTCTTCGAAATATTCTCTTGTCATGGAATGTCTTAGTCTTCTGCTTGTATATACAGGCATTCTCATAAGCGTCTTGGTGAATCTCGTCTAGCTCGTTGAGTTGCATTAGGCACTTCTCCGCAGCGTTTTTTATTTCATTGTTCAGCATCTTCACAGCCCACATAGGTTTGTATTCTAGCTCAACCGGCAAATGACAAGACTTTACATAGAGAAGGTTGAAAGGAGTTGTACCAATGGGAGTCTTGAAAGCTGTTcgataagcccacaaagcatcgTCTAGCTTAAGCGACCAGTCTTTTCGTGAAATATTCACCGTCTTCTCCAATATTGCTGTGATTTCTTGGTTTAAAACCTCCACTTGTCCGCTTGTTTGAGGATGATATGATATTGCAACGTTGTGTCTAACGCCATGCTTCcttaggagtttATCGAAAGTTTTGTTAATGAAATGCGTTCCTCCGTCGCTAATCACCACTCGCGGAACTCTGAAACGCGAAAAATGATGCTCTTAAAAagtttcagaacTACCTTCGCATCGTTTGTTGAACATGCCACAGCTTCTACCCATTTAGATAATCAACCGCCACTAAGATGTAGTTGTACCATGTGAGTTCGGAAAAAGGTCCCATGAAATAGATGCCCCACACGTCAAAGACTTCTACCTCCATTATCGGTTTTTGAAGCATCACGTTCCTTCGACTTATGTTTCCTCTTCTTTGACATGCATCACAAGctaggatgaaTCGATGAGCATCTCTAAATAAAGTTGGCCACCAAAATCCAGCTTGCAAAACTTTAGCTACCGTTTTGAATGTAGCGGAATGTCCTCCATAGATCCATGGCATCCCGTCAAAATCCCATGCACTTCATTTTCAGGAACGCACCTTCTATAGATTTTATCCTTACATAGTGTGTAGAGGTTTGGGTCGTCCCAATAGTATCGGTTGATCTCTTCTTATGATATCCGACGAGATCAGGCGGTTTCTCTCCACAAGCGAGAtagttgacgatgtcagcataccatggtgatttatccttgatgacgttgatgctcTTCAGTTCCTTGTTGAGGTAGTGCTCGCCAATAAGTACTCTAATAGTGTAAACTTGCTCTTCTGGTGGTGAATCATCAATAGGTATCTCGTCCTCGATCCTCATCCAAGAAAAATGATCAGCCACTCCGTTTTCTATTCCtctcttgtcttTTATCTCCAAATCGAACTCTTGAAGAAATAGTATCCATCGGAGTAGCCTCGGCTACGCATCTTTCTTCGCACCTTAATGCCGCATGGTCCGTGTGAACTATGACTATTGACGGGACTACTCAAAAGCAAAGATGATCGCTAGAAACTCTTTCTCCGTAGTAGCATAATTCATTTGCGCTTCGTCTAGTGTTCTACTCGCGTAATAGATGACATTCAGCTTCTTATCcttgcgttgtcctagcacagctcctaCCGCATAATCACTAGCATCACACATAATCTCAAACGGCAATTCCCAATCC

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

578

Start:

358305  

End:

358882

Strand:

-

>Scaffold12302_LTR_14

CCCCACACATCAAAGACTTCTACCTCCATTATCGGTTTTTGAGGCATCTCGTTCCTTCGACTTATGTTTCCTCTTCTTTGACATGCGTCACAAGCTTGGATGAATCGATGAGCATCTCTAAATaaagttggccaCCAAAATCCAGCTTGTAAAACTTTAGTTACCGTTTTGAATGTAGCGAAATGTCCTCCATACGTAGATCCATGGCATCTCGTCAAAATCCCATGTTCTTCATTTTCGGGAACGCACCTTCTATagattttatccTTACATAATGTGTAGAGGTTTGGGTTGTCCCAATAGTATCGGTTGATCTCTTTGATAAACTTCTTCTTATGATATCCGACGAGGTGAGGTGGTTTCTCTCCATAAGCAAGATAGTGACGATGTCAGCGTACCATGGTGATTTATCCTTGATTGCGTTGATGCTCTTCAGTTACTTGTTGAGGTAGTGCTTACCAATAAGTACTCTAATAGCGTAGACTTGCTCTTCTGGTAGTGAATCgtcaataggtaTCTCGTCCTCGATCCTCATCCGAGAAAGATGATCAGCCACTCTGTTTTCTATTCCTTTCTTG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1001

Start:

358894  

End:

359894

Strand:

-

>Scaffold12302_LTR_15

TCATTTGCGCTTCGTCTAGTGTTCTACTCGCGTAATAGATGACATTTGGCTTCTTATCCTTGCGTTGTCCTAGCACAGCTCCTACCACATAGTCACTAGCATCACACATAATCTCAAACGGCAATTCCCAATCCGGcggttgtactATCGGTGCACTCACTAGCTCCTTCTTGATTGATCGGAATGCCTCAAAACATGCATCATCGAAGTTGAACTTAACATCTTTGAATAGCAGGCTGGTGAGTGGTCTTGCTATCTTAGAAAAATCTTTGATGAATcttcaataaaaatTAGCATGACCAAGGAAACTTCGTATGTCTTTCACCGTTTTTGGAGGCCCTTGACTTGTTATCACATCGATCTTGGCCATGTCGAGTTCAATCCCTCTTTCCGATATCTTATGTCCAAGAAGGATTCCTTCTCTCACCATGAAATGACACTTCTCCCAATTAAGTACGAGGTttgtctcttcgcatcgttcaagtaccttgcacaaattagacaaacaaccaccaaacgaagaaccATACACAGAGAAATCATCCATAAACACCTCAACTACTGATTCAATTAGATGTTAAATATCGACATCATACACCTTTGAAAGGTTGCAGGTGCATTGCATAGTCCAAACGACATTTTTCGATAAGCAAAGGTACCTTAAGGACATGTAAATGTCGTTTTTTCTTGATCTTACGGGTGTATCAGAATTTGAAAGAATCCCGAATACCCATCTAAAAAACAATAGTCAGAGTGATTTGCTAATCGTTATAACATCTGATCAATAAACAGAAGAGGAaaatgatctttTCTAGTGGCAGCATTTAATTTCCTAAAATCAATACATATCCTATGTCCCGTGATAGTTCTAAAAGGAATTAATTCGTCATTTTCATTTTTTAccacagtgatACCACCCTTTTTAGGAACTACATGAACAGATGATACCCAATTACTATCAGATATACGATAAATAATTCCTGCATCTAGAAGTTTAAGAT

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1189

Start:

359897  

End:

361085

Strand:

-

>Scaffold12302_LTR_16

AAATGGTTTCAACTTCACTTTCGACACCTTGATTTCGCTCCAATCGCCTTCATCGCAAGTCTTTCCTTTGCTTGCTTCCTCTGTGGCTTCTTTTTCTTTGTCACCTTCAGTTAGACTCGCGTAGGCCATCTCACGAGGTATCATGTCCGCCACGTCTCCATTTTGTAGCATTTGGAACTCTTCACTTAGCTCCTCGTTTTCGAGCTCAACTTCGTCCAacacaccatcAGCCAACAAGTCGAGATCGTCTATGTAGAAGATGCGGTCTCGTTCTTCAGGTTTTTTCATCACTTCGTCAATACTAAACTGCATAACTTCGTTGTTTAAATGAAGATAGATTTTTCCGTTTTTGACATCGATGATGGCTCTCGCGGTTGCTAGGAATGGTCTCCCTAGGATGAGTGGATCATTGGGCTCGTGATCCATCTTGAGtaccacaaagTCGGTTGGAATTTGGTAGTCACCTCTCATCACCGGAATGTCTTCGAGTAATCCCACCGGCgtttttatcgAGCGATCGGCGAGAACGAGTGACATCTAACATTCCTTGAATTTTGTAAATCCCAACTTTTGTGTAATGGATAAAGGCATGAGGTACACACTAGCTCCAAGATCACATAAAGATCTCCCaaatgttatcgGACCTATATTGCAAGAGAGAGTGAAGCTACCCGGATCGTCTAATTTCTTTGGAATTTTCTTGTCAAGAATAACAGCGCTACACTTGTGTGTTAGGAATGCTACCTCGGTGAGCTCCTTCTTCTTCTTAGTCACGAGATCTTTGAGGAACTAGCTGGCGTTGGGAATCATCGTCAAAGCTTCTAGTATCAGCATAGTAATGATTACACCTTTCATTTGTTGTTCAAATGCAGCCTAGGAATCTTAGGCTGATAATTGTGTACGGAGTGTCACCTGACTCCTTCCACGAGTATTAGGCTCTTTATCCTTACCGGGTTTCTCCTTGATTACTTCCTCAATCTCGGGTTCCTCTTCAATTGTGATGTGATCTTCTTTCTCGACGATAGGATCTTCTTTTTCAACGGTAGGGCCTTCTTTCGCGATGATGGTCTCGTCGTTCTTTTTGTTGATCTGTTGCTTAGGTGGGataggtctaagCTCCTTTCCACTTTTCAAGGTTATCGCATTGATTGTTGGTGTAACCTCCAATGTCTTGGCTTATAGTTTTTGG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

688

Start:

361562  

End:

362249

Strand:

-

>Scaffold12302_LTR_17

GTGTTGTTCTTCGCGATGTtttgacggggcGAAATGTTTCGCCGATTTCAGAAACCCATCTAATTTTTCGTGTAGCGCCTCCATGGTCAGCTTCTCCTAGGCTTCATGTATGTCGGCGTGTTCGTTTATTCGATCGTAATCTCCTCCGTATTTCGCATCACTCTCGGCTAGATTCTCCACTAACTTCCTTCCACGCTGCGCGTCTTGCCCCAAGAAAGCTCTGCAGCTTCCTACATCGAGTAACGTACGATACTTAGGAGTCACTCCCCTGTAAAATATGctcagcaaggACTCATCGCCAAATCCATGATGAGGGCATTGTCTTGTGTATTCTACAATCCTCTCCCACGCTTCTCCAAATCTCTCAATGCCTCGTTGTGCGAAGTTTGATATCTTGTTTCTCCAATAAGTTGTCCTAGCGTTCGAGTAGAACTTTTTCAGGAACGCTTTCCggcattgactcCACGTTGTAATAGTCTCTGATGAGATGTTCTTCTCCCACTGATGTACTTTACCACCAAGTGAGAACGGGAATAGACAAAGTTTTAGTGCATCTTCAGAGAGGCCGTTTATGTGTACCATCCCGCATAACTTGTTGAAGTGATCCAGATGATCCATAGAGTTCTCTGTTGATAGGCTTTGGAACTTTTCTCCTTGGATCATGTTAATCAAGTCGACCTTGATTGCA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

3266

Start:

376894  

End:

380159

Strand:

-

>Scaffold12302_LTR_18

CTGTTCACCGTGAAGCTTTCCCCATTATCCCCCCATAATTCTATAGCTCCATAAGGTGTCACCGCCTTTATCTTGAACGGTCCGGACCATCGAGAACGAAGTTTGCCTAGAAAAAACTTTAATCGGGAGTTGTAAAGTAGGACTTGATCATTTACCTTAAACTCCTATTGAAGTATTCGCTTGTCATGGAATGCttttgtcctcTCTTTGTATATCCGGGCATTCTCATATGCATCCAGGCGAATCTCTTCTAGTTCGTTTAATTGCATGAGGTACCTTTCAGCAGCGGTTTTGATGTCGTAGTtcagcatcttgACAGCCCACATAGCTTTGTACTCGAGCCCCACCGGTAGGTGACATGATTTTCCATACAGAAGATTGAAAggagtcgtacCTATAGGCGTTTTGAAAGCTGTCCAATAGGCCCACAAAGCATCGTCTAGCTTGAGTGATCAATCCTTTCGTGAAATGTTCACCATCTTCTCTAAGATTGCTTTGATTTCACGgttagaaactTCCACTTGTCCACTTGTTTGAGGATGATTTGGTGTCGCCACTTTATGTCTGACACCATGCTTTCATAAGAGCTTATTGAAAGTTCTGTTGATGAAGTGTATCCCTCCGTAGCTGATCACCACTCGCGGGATACAGAATCATGGACAGATGATGTGGTTAAAAGGTTTAGGAACTACCTTTGTGTCGTTTGTTGGACTTGCCATAGCTTCTACCCATTTAGACACGTAGTCCACtgctactaggATGTAGTTGTTTCCATGTGAGTTTGGGAAATGTCCCATAAAGTCGATTCCCCATACATCGAAGACTTCTACTTCCATTATCAGATTTTGAGGCATCTCATTTCTACGGCTTATATTTCCTCTTCTTTGACATGCATCACAAGCTAGGATGAATCGATGAGCATCtttgaacaaagtcggacaccaaaaTCTAGCTTGCAAAACTTTAGCCACCGTCTTGAATGTAGCGAAATGTCCTCGGTATGTTGATCCATGGCATCCCGTCAAGATCCTGCCAACTTCATGCTGAGAAACACATCTTCTGTATATTTTATCCTTacatagcgtgTAGAGGTTTGGATCATCCCAATAATACAGATTGATCTCCTTGAAAATCTTTTTCTTGTGATATCCGACGAAATCAGGTGGTTTTTCTCCACAAGCGAGATAATTGACGATGTCGGcgtaccatggtGACTTGTCCTTGATGGCGTTGATGCTTTTCAGCTCCTTATTGAGCTTGTGTTCACCGATAAGTACTCTAATGGCATAGAGTTGTTCCTCCGGTAGTGAATCATCGATAGGGATCTCGTCAGTGAttctcattcgaGAAAGGTGATCAGCTACTCCGTTCTCTATTCCTCTCTTATCTTTCATCTCCAAATCGAACTCTTGAAGGAGTAGTATCCAGTGGATTAGCCTTGGTTTTGCGTCCTTCTTAGAGAGTAGATACCTTAGTGATGCATGAGCCGTGTGTACAATGACTTTAGAAccgactaagtaTTGGCGGAACTTCTCAAAAGCAATGACGATCGCTAGAAGCTCTTTCTCCGTAGTGGCATAATTCATTTGCgcttcgtctagCGTCCTACTTGCATAATAGATGACATTCAGCTTTCCGTCTTTTCGTTGCCCAAGCACAGCTCCTACGGCATAGTCACTAGCATCACACAtaatctcgaacggtaacccccaatctggcggttgtactatcggtgcactaactagctccttcttgattgatcggAATGCTTCAAAACATGCGTCATCAAAGTTGAACTCGACATCCTTGCATAGCAGGTTGGTGGTTGGTCTTGCTATCTTAGAGAAATCCTTGATAAATCTTCAATAAAAATTAGCATGACCAAGAAAACATCGTATGTCTTTCACCGTTTTTGGAGGCCCTAAACTTGTCATTACATCGATCTTGGCCTTGTCGACTTCAATTCCTCTTTCTGGTATCTTATGCCCGAGAACGATTTCTTCTCTCACAATGAAATGACACTTCTCCCAATTAAGTACTAGGTTTGTCTCTTCGCACCGttcaagtaccttgcacaaaTTAGACAAACAACCACCAAACAAAGAACCATACACAGAGAAATCATCCATGAATACCTCAACTACTCATTCAATCAATTTTGTAAATATTGACATCATGCACCGTTGAAAAGTCGTAGGTGCATTACACAACCCAAACGGCATTCTTCGGTAAGCGAAGGTACCATAAGGACATGTAAATGTcgttttttctTGATCTTGAGGATGTATCGGGATTTGAAAGAATCCCGAGTACCATCCTAAAAAGAAATAGTGAGAATGATTTGCCAATCTCTCTAACATTTGATCAATAAACAGAAGAAGAAAATGATCTTTTCTAGTGGAACATTAAATTTTCTGAAGTCAATACACATCCTATGTCCTGTGATAGTTCTAGTTGGAATTAATTTGTCATTTTCATTTTTTACCACAGTGATACCACCCTTTTTAGGCACAACATGAACAGGTGAGACCcaagtactatcTGATATAGGATAAATAATACCTGCATCTAGAAGTACGTAAATTTAGATTTAATCGCCTTTGAGGTTCAATTGAATTCTTAGATTCATCTTTTAAATGTATTCTATGCATGCATAGGGATGGGGATATGCCCTTGATATCATCTAGAGATCCTATTGCTTTTTTATATTTTCTCAAATCATCAAGTAAAAGAGAAATTTCATCATCATTAAGCTCATCACTtactatgacaGGATATGTTGAATTAGGACCGAGAAATACGTACCTTAGCCCTTTTGAAAGTGGTTTCAACTCCACCTTCGGTGCCTTGAGATCGCTACAATCATCTTCATTTCAAGTCTTACCTTCGCTTGCTTCCACCGTGGCTTCTTCTTCTTCGCCACCTTCGATTAGACTTGCGTATGCCATCTCACAAGGTAGCATGTCCGCCACGTCTCCATTTTGTAGCGTTTGGAATTCTTcacttagttcTTCGTTTTTGAGCTCAACTTCGTCCAACACACCATCAGTCAACAAGTCGAGATCGTCTACGTAGAAGATGCGGTCTCGTTTTTCGGTTTTCTTCATCACTTCGTCAATACTAAACTGCATAACTTCATCGTTATGGTGAAGGTTAATCTTCCCATTCTTTACATCGATAATGGCCCCCGTAGTAGCTAGGAATGACCTTCCTAAGATAAGTGGATCCTTGGGTTCGTGATCCATCTTGAGTACTACAAAGTCTGT

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

798

Start:

392209  

End:

393006

Strand:

-

>Scaffold12302_LTR_19

TCTGTCGGTATTTGGTATTCACCAATCATTACTGGAATGTCTTCAAGCAATCACACTGACATCTTACACTCCTTGAACCGAGTAAGTCCCAACTTTTTCACAATGGATAGAGGCATTATATTCACACTAACTCCAAGATCGCATGAAGATCTACCGAATGTTATGTGACCGAGGGTGCAAGAGAGAGTGAAACTGCCTGGGTcatctagcttCCTTGGAATCTTCTTGTCGAGGATGATGGTACTGCACTCGTGTGTCAAGAAAGCCACTTCGGTTAGTTCCTTTTTCTTCTTAGTTACAAGATCCTTGAGGAACTTGCTAGCGTTTGGAATCATTGTCAGGGCTTCTAGTATTGGCATAGTGATGATCACACCTTTCATTTGTTTTTCAAATGCATTCCTTATTCTCTCCGCTATTCTTCCCTTAATTTTTCCCGGAAAACGAACTTTAGGTTGATATTTTGGGAGATCATGTGTCACTAGTTTCCTTACGCGAGTCTCAGGTCCCTTTCTGGGAATTTCCGTAGTACGAATGTCAGGCTCCCTATCTTTGTCTGGCTTCTCCATAATGACCTCCTCGATTTCTAGTTCCATCTCGAATATCTGGGGATTCTTTTTCTCGACTATTGGTTCTTCCCTCTCGATCATGATAGGGTCGTCTTCTTTTTCGATGTAAGCTCCTTCGCTTTTCTTGTTTATTGGCTGCTTAGGTGGAATcggtctgagctCCTTTCCACTCTTCAAGGTTATTGCTTTGACTGACGGAGACTATTTTTGTGTTCGTGTTTCTATATTTTGG

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

2582

Start:

396486  

End:

399067

Strand:

-

>Scaffold12302_LTR_20

TAGTGGCGTAATTCATTTGCGCTTCGTCTAGcgtcctacttgCATAATAGATGACATTCAGCTTTATGTCCTTGCGTTGTCCAAGCACAGCTCCTACGGcatagtcactAGCATCACACATAATCTCGAATGGTAACTCCCAATCCGGCGGTTGTACTATCGGTGCACTAACTAGCTCTTTCTTGATTGATCGGAATGCTTTGAAACATGCTTCATCGAAGTTGAACTCGACATCCTTGCATAGCAGGCTGGTGAGTGGTCTCGCTATCTTAGAAAAAGCTTTGATGTATATTCGATAAAAATTAGCATGACCAAGGAAACTTCGTATGTCTTTCACCTTTTTGGAGGCCCTAGACTTGTCATCACATCGAACTTGGCCTTGTCGACCTCAATCCCTCTTTCCGATATCTTATGTCCCAGAACGATTCCTTCTCTCACCATGAAATGACACTTCtcccaattaaGTACTAGGTTTGTCTCTTCGCACCGTTCAAGCACCTTGCAAAAATTAGACAAACAGCCACCAAACGAAGAACCATACACAGAGAAATCATCCATAAACACCTCAACtactgattcaattaagtctgaaaatatTGACATCATGCACCATTGAAAAGTTGCAGGTGCATTACATAATCCAAACGGCATTCTTCGTTAAGCAAAGGTACCATAAGGACATGTAAATGTCGTATTTTCTTGATCTTGAGGATGTATTGGGATTTAAAAGAAACCCGAGTACCCATCTAAGGGATTTGAAAGAAACCAGAGTACCTATCTAAGAAGCAATAGTGAGAGTGATTTGCTAATCATTCTAACATTTGATCAATAAACGGAAGAAGAAAATGATATTTTCTAGTGGGAGCATTTAATTTTCTAAAATCGCTACACATTCTATGTCCTGTAATAGTTCTAGTACGGATTAATTCATCATTTTCATTTTTTATTAGAGTTATTCCACCCTTTTTAGGgactacatgaaCAGGTGAAACCCATGTACTATCTGAAATAGGATAAATAACACCTGCATCTAGAAGTTTAATAATTTCTTTTCGTACTACATCTCGTAAATTTGGATTTAAATGCCTCTGAGGTTCAATAGAATTTTTAGATTCATCTTCTAAATGTATCCTATGCATGCAGAAGGAGGGGGATATTCCCTTTATATCATCTAGAGAATATCTTATAGCCTTCCTATATTTTTTTAATTCATTTAGTAACATTGTGGTTTCAGCATCATTAAGCTCATCACTAATTATGACAGGATATGTTGAATTCTGTCCACGAAATATGTACCTTAGCCCTTTTGGAAGTGGTTTTAGCTCCACTTTTAGTGCCTTAAGTTCGCTCCAATCGTCTTCGTCTCAAGTCTCAACGCTGCTTCCCTGTATTTTGGCTTCTTCTTCTTCGTCACTTTCGGTTAGATTTGCATACGCCATCTCACGAGGAATCACGTCAGTCATATCTTCAATCCGTACTGTTTGGAATTCTTCACTTAATTCTTCGTGTTTGAGCTCAGCTTCATCCCATTTTCCATTACCTAGCAAATCGAGATCATCTATGTAGAAAATACGGTCTCATTTTTTGGGTTTCTTCATCACCTCATCgatactaaactGCATCACTTCATCGTTTAGGTGAAGGTTGATCTTCCCATTTTTAACATCGATGATGGCCCCGCGGTAGCTAGGAATGGCCTTCCTAGGATAAGTGGAtccttgggctCGTGATCCATCTTGAGTACTACAAAGTCTGTCGGTATTTGGTTTTCACCAATCATCACTGGAATGTCTTCAAGTAATCCCACCAGCGTTTTTATTGAGCGATCAGCAAGAACTAGTGATATCTTACACTCCTTGAATCGAGTAAGTCCCAATTTCTGTGCAATGGATAGTGGCATTAGATTCACACTAGCTCCAAGATGACATAAAGATCTACCGAATGTTATGTGACCGAGAGTGCAAGAGAAAGTGAAACTGCCTGGGTCATCtagctttcttgGGATCTTCTTGTCGAGGATGACGATACTGCACTCATGTGTCAAGAACACCACCTTAGTTAGCTACTTTTTCTTCTTACTCACGAGATCCTTGAGGAACTTGTTAGCGTTTGGAATCATCGTCAAGGTTTCTTGTATCAGCATAGTGATGATCACACTTTTCATTTGTTCTTCAAATACATTCCTCATTCTTTCCGCTATTCTTCCCTTGATTCTTCCCAAAAAAGGGATTTTAGGTTGATACTTTGGGAGAtcgtgtgtcacTTGTTTCCTTATGCGAGTCTCGGGTTCCTTTATGTGAATTTCCGTAGTACGAATGTCGGGCTCCCTATCTTTCTCTGACTTCTCCGTGATGACTTCCTCGACTTCTGGTTCCTCCTCGAATATCTTGGGGTTTTCCTTCTCGACTATTGGATTTTCCTTCTCGATCATGATAGGGCCGTCTTGTTTCTCGATGTTAGCCCCTTCGCTTTTCTTGCTTACTGGTTGCTTAGGTGGAATCGTTCTGAGCTCCTTTCTACTCTTCAAGGTTATAACTTTGACTGACGGTGACTCTTCCTTTGTTTGTGTTTCTATATTTTGG