ID Class Order Superfamily Length Start End Strand View
Scaffold10021_LTR-Copia_1 RetrotransposonsLTRLTR-Copia10961986920964+
Scaffold10021_LTR-Copia_2 RetrotransposonsLTRLTR-Copia5112095521465+
Scaffold10021_LTR-Copia_3 RetrotransposonsLTRLTR-Copia4632161522077+
Scaffold10021_LTR-Copia_4 RetrotransposonsLTRLTR-Copia8012272323523+
Scaffold10040_LTR-Copia_5 RetrotransposonsLTRLTR-Copia972454724643+
Scaffold10040_LTR-Copia_6 RetrotransposonsLTRLTR-Copia1475431654462-
Scaffold10040_LTR-Copia_7 RetrotransposonsLTRLTR-Copia2175452054736-
Scaffold10040_LTR-Copia_8 RetrotransposonsLTRLTR-Copia4205124968129172+
Scaffold10040_LTR-Copia_9 RetrotransposonsLTRLTR-Copia169132068132236-
Scaffold10040_LTR-Copia_10 RetrotransposonsLTRLTR-Copia176148002148177-
Scaffold10040_LTR-Copia_11 RetrotransposonsLTRLTR-Copia4586148504153089-
Scaffold10040_LTR-Copia_12 RetrotransposonsLTRLTR-Copia176153994154169-
Scaffold10040_LTR-Copia_13 RetrotransposonsLTRLTR-Copia1607174251175857-
Scaffold10040_LTR-Copia_14 RetrotransposonsLTRLTR-Copia1878176182178059-
Scaffold10040_LTR-Copia_15 RetrotransposonsLTRLTR-Copia582179668180249-
Scaffold10040_LTR-Copia_16 RetrotransposonsLTRLTR-Copia949199129200077-
Scaffold10040_LTR-Copia_17 RetrotransposonsLTRLTR-Copia598200590201187-
Scaffold10040_LTR-Copia_18 RetrotransposonsLTRLTR-Copia419220106220524-
Scaffold10040_LTR-Copia_19 RetrotransposonsLTRLTR-Copia114220712220825+
Scaffold10040_LTR-Copia_20 RetrotransposonsLTRLTR-Copia472319604320075+

< 1 2 3 4 5 > Total 665


Boechera stricta (v1.2)

ID:

Scaffold10021_LTR-Copia_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1096

Start:

19869  

End:

20964

Strand:

+

>Scaffold10021_LTR-Copia_1

CAGATAGTGCGACAACGGACACAATATTGAAAGATAAAAAGTATTTTTCCGATCTTAAATTCAAAGAAACTGGTGTGATTACTATATCAGGAAACACAAAGATTATTATGGGCTCCTGAAGAGTCCAgttttcaatgCCAAGGGGGACAAAGTTTGAAATTAACGATGTAGTATATTCCCCCAAATCTAATAGAAACTTGTTAAGTTTGAGAGATATCCGCAGAAATGAATACCATGTAGAGACTAAGAATAAGagtgacattgaATATCTTTGCATCACATCAGTTATTTCGGACAGAAAATATATATTAGAGAAACTGCCAGCTTTTTCTTCTGTACTATATTTTACAAAGATTAATATGATTGAATCATATGCCACGACAAAGCCGAAGTTTACCAAtatatttaaaGTGTGGCTTGAAAGGCTGGGTCATTCTGGTTCAATCATGATGAGAAAAATTGTGGAAAGTTCTAATGGTCATCCGTTGAAAGACCAGAAGATCTTTCAATCAAATGAGTTTTTATGTGatgcatattcTCGAGGAAAACTTATAACTCGGCCATCATCAGCTAAAATTGGGAATAAATCACCAGAATTTTTAGAAAGAATACATGGTGATATATGGGGACCAATCCACCCGGGTGgaccatttcaaTATTTTATGGTATTAATTGATGCATCAAGTAGATGGTCCCACGTGTATCTTTTAATGACACGTAATATGACATTTGCCAGATTCATTTCCCAAATAATCAAGTTAAAAGCGCAATTTTCTGATTATATTAtcaagaaagtGAGGCTTGATAATGCTGGTGAAATTACTTCACAAGCCTTTAATGATTATTGCATGTGACTGGGGATCGATGTTGaacatccaatGCCCCATGTTCGTACACAAAAAAGCTTGGCTGAAACTTTGATTAAACGATTGCAACTAATTGGAAGATCGTTAATACTGAGAATGAAACTCCCAATTTTGATATTGTGACGTAATATCTTGCATGCTAAGGCATTGGTCCAGACTCGACCAAGTGCATATCataagtgttctccattacaattAGCATCTGGTCAGCAGCCAAATATATTGCATCT

Boechera stricta (v1.2)

ID:

Scaffold10021_LTR-Copia_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

511

Start:

20955  

End:

21465

Strand:

+

>Scaffold10021_LTR-Copia_2

TATTGCATCTCCGTAACGTATGAAAATATGGTCCAACGGAGATTGAGCATTTTATATTGGTTatatgtcaccaAGTATAATTTGTTATCTTGAACCACAAACTGGTTATATGTTTGCAGCTCGTTTTGCTAATTGCCAttttaataaaAATGAGTTCCCATCGTTAGGGGAAGAATTCGTGAGATATTGCATGGTATCACCATCGTTGATATCATCTGAATCCTCCTACAAAACAACGTGAACTCGAAATGCAGAAAATTATGTACTTACAGAATATGGCAAACGAGTTACCAGATGGGTTCATAGATACAAAGagggtgacaaaatcatatataccggctgcaaatgttccatcaagaattggaattccaaaggaaCAAATTGATGCTAATAAAATTAATGAGCCTAAAGTTCAGTTAAAGAGGGGAGACCCATAGGTTCTAAAGATAAAATTTCCCGAATGAAAAAGGCAATGGGAGaattaaattcACATAAAAAGGTTCCTGAAGAA

Boechera stricta (v1.2)

ID:

Scaffold10021_LTR-Copia_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

463

Start:

21615  

End:

22077

Strand:

+

>Scaffold10021_LTR-Copia_3

GGGTAAGAAATTATATAGATGATGATCATGGAATTTTCTCATTTTATGTATCCGAAGAAATTATCGATAATGAGAATGACGACTCAGAACCAAGGTCCATATTAGAATGTCagaaagctatgcaaaatgaactaatctcccttagtaagagaaatgtttttggaatatggtcactacatctaaatatgtgaaaccggttgggttgcaagtgggtatttgTGAGAAAACGGAATGAGAATAATGAGGTCACAAGATATAAAGCCCGACTTGTCCCCTATGGTTTCTCTCAGAGATCAGGAATTGATTATGAAGAAACATATTCCGCAGCAATGGATGCAATTACGTTCAAATATTTAATGAGTCTAACAGCGTGCCAAAATTTAGAAATGAATCTTATGGATGTAGTGACAGCGTGTCTATATGGATCGCTTGATAATGAGATATATATGAAAATCCCAGAAGG

Boechera stricta (v1.2)

ID:

Scaffold10021_LTR-Copia_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

801

Start:

22723  

End:

23523

Strand:

+

>Scaffold10021_LTR-Copia_4

GCTATTGGTGGACTTATGTATCTTGCAAATTGCACACAACCAGATATAGTTTTTGCTACTAATCTGCTTACAAGATATAACTCGTCCCCGACGCGCAGACATTGGAACGGAATAAAACACattttccgttatcttcaaggtacaattgaattaggattatattatccaagaaattcgaaattttgtctagttggttttgcagatgcaggttatttatcagatccacataaggcaagatcttaaactGGATATATATTCACTATAGGAGGGACTGCAATCTCATGGCGTTCTCAAAAACAAACACTAGTTGCTACTTCATGTAATTATGCAGAGATCATAGCACTCCACGAAGCCTATAAGCAATGCGTGTGGCTCAGATCTATAATCCAACATATTCAAGAATCTAGTGGCataaccacaagtaaagagcccacaaccatattcgaagataatgctgcatgtgtcgcacaaattaaagaaggttatatcaagagcgatataacgaagcatattccaccaaggtttttcTCTTACACACAAGAGCTCGAGAAAAATCAAGAAATCAGTATTAAATACGTTCGCTCAAGCGACAATTCAGCAGAGCTTCTTACAAAGGCGTTACCCACCACAATGTTCAAAAAACATATTTATAGTATTGTGATGCGTCATTTACGAGATATATGAGGAAGAAGTGTTTTCCAGCGGGAGAATATGTTACTATACTTTTTTCCCTTATCATGGTTTTTATCCCATCGGATTTTTCCATGACAAGGTTTTTAACGAGACAGTACATATTAAATA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

97

Start:

24547  

End:

24643

Strand:

+

>Scaffold10040_LTR-Copia_5

ttgtcattactgcaggaagaaacaccataaattagaaattactaattagaagtgtagaaaattgtaactctctctttcacaGAAACAGAGTACATGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

147

Start:

54316  

End:

54462

Strand:

-

>Scaffold10040_LTR-Copia_6

CACTTTCCATCCTCATTTCTCATTCAAATTAAACTTTATTTTGACGTATGAGTATACTATGTTATAGTACTCATTATAAGATTTCCGATGCACTTATAATCAAATTAATCCAATATTGAAAATTACCAAAAAAGTCGCCGGAAAAGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

217

Start:

54520  

End:

54736

Strand:

-

>Scaffold10040_LTR-Copia_7

GACTAAACATACAAATTTTGAGAGTATATGCAAAAAAATTCATTGTGTTTGAGATGGTGGTATTTTTCATCCTTGAACCGCTCATAGTTAATGTTTGTCGGGTCTACTCGACCAGGATGTGAATATGATGTCTTGAACCCTCCGGATTTTGGTGTAAGCTGAGACAATATATATATAACCCAGCTTCATTTTCTCGTAGAGCTAATTTTGTATTTGT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

4205

Start:

124968  

End:

129172

Strand:

+

>Scaffold10040_LTR-Copia_8

TCCAGATCAGTCTCCGTTCTATATGCACAGCGCCGATCATCCAGGTTTGCAGATCATCTCTATTCGTTTAGATGGAACTAACTATGATGATTGGAGTGTTGTGATGTGTATATCTCTAGATGCAAAGAATAAGATATGATTCATATATGGTACATTATCACGTCTTCTTGAATCATATCTAAATTTCAGGATTTGGTCTAGATGCAATAGTATGGTTAAGTCTTGGTTGTTGAACTTAGTATCACCTCAGATCTATCGTAGCATCTTAAGACTTAATGATGCTTCAAATATATGGCGTGATCTCAATAGCCGATTCCATATGAGCAATTTGTCTATAACATTCAATCTGACTAAAGAGATTCAGGATCTACGTCAAGGATCTATGTCTTTGTCAGATTATTATACAACTTTGAAGACTTTTTGGGATAATTTGGAAAGTTCTGAAGAACCAGGAGAACCTTGTATTTGTGGAAAAGCTACTCAGTTATAACTGAAGGCTAAGAGAGGTAAGATTGTTAAGTTTCTTGCTGGTTTGAATGAGTCTTATGATATCACATGAGATAAATCATTTTGATGAAAGTTCTTCCTTCTTTGACTAAGGTTTATAATATTCTAGACCAAGATGATAGTCAGAGAGGTTTTTCAACTAACATCACTCCTGCTGCTTTTCAAGTTTCAAAGTCTGAAAATGTTGTTTCTGCAGAAGATCCAGCTGTTTGTTATGTGGCTACTGGTGCTCAGAAAAGACAACCTATTTGTTATTTCTGTAATAGAATTGGTCACATTGTAGAAATATGTTATAGGAAACATGGTTTCCCTCCTGGTACAGGTCCAAAAGGAAAAGCTTTTGAAAAGTTTCAGCAGAAACCTAAACCAGTTGTTGCTCAAGTTGCTTTATCACCAGTGAATGATGCAAAATCAAGTGAATGTGCATAAATTGTTGGTACTCTTTTCAAATACCAGATTCAGCAGTTCATTGCATTCTTCAGTTCCCAACTTCAGACACAATCAGTTGATCAAGTTCAGGAAGTTGGTTCTTCTCAATCTGCTTTTGATCATACTGGTATATCTTTTTCTCCCTTTACCTATTGCTTTGTTGGAATCTTGACAATCTCACAACATTCTTTATCATCAAAGACATGGGTGATTGATTCTGGTGCTACTCACCATATCTCCCATGATTTATCACTGTTTGTATCTATTGATACTTCAATCAAAAGTGCTGTGAATATGCCAACAGGTGATAAAGTTAAAGTTAGTGGAGTTGGAAATATTCAGTTAAACAGACACATCCTTCTCAGAATTGTTTTGTTCATACCTAAGTTCCGGATAAACCTTATCAGTGTGAGTTCTTTGAATGATTGTATTGGAAGTAGAGTGATTTTTTATCCTGCTTCTTCTGAAATTCAGGATCCTACCAAGGGATTGATGATTGAAAAAGGTAGAAGAGTTGCAAATCTCTATGTGCTGGATACAGAGGAAGACATTCAAGTGAATGCTGTGGTGAATGCAAGTATGTGACACAAGAGACTAGGGCACCCTTCTTACTCAAGATTGGATGTGATTGCAGATGTTCTAGGGACAACCAAACACAAGAATAAAGAAGCTGCTTAGTGTCACATATGTCATTTGGCTAAACAAAAGAAACTATCCTATGTTTCACCAAATAATGTATGTAAAACGGTTTTTGAGCTGCTACATATTGATGTTTGGGGACCCTTTTCTGTGGTTACAGTTAAAGGATATAAGTATTTCTTGACGATAGTAGATGATCATTCTCGTGCAACATGGGTTTATTTACTTAAAACCAAGAATGAAGTTATCACTGTTTTTCCAGCATTCATACAGAAAGTTGAAAATCAGTTTGGTGTTAAAGTAAAGGCAGTGAGATCAGATAATGCACCAGAGTTGAGGTTTACTAAATTTTATCAAGAAAAGGGGATCACATCTTATCATTCTTGTTCTGAGATTCCAGAACAGAATTTAGTAGTAGAGAGAAAGCATCAACATTTTTTGAATGTTGCTAGAGCTCTACTTTCCAATCATAGATTCCACTGATGTATTGGGGTGATTGTGTTCTTACTGCAGCTTCTCTTATTAACATAACTCTGCTCAATTGCTTGGAAATAAGACTCCTTATGAGGTACTCACAGGAAAGACACCAGACTATAATTCATTGAAATCTTTTGGTTGTTTATGTTACTACTCCACATCACCTAAGCAGAGACACAAATTTCAACCAAGAGCAAAGACGTGTGTATTTCTGGGTTATCCATCTGGATATAAAGGGTATAAATTACTGAATTTGGAGAGTAATAGTATACTGATATCAAGAAATATTATCTTCCATGAGGAGGTATTTCCATCAGCTAAAAACATTGATACAGGAAGCTTATCTGCTAACTTCACACCAATATCTTCTGAGTTATCAGGTTCTCCATCTATCTCTATTCCATCTATCATTCCATCATTACCATTACCATCTTCTTTACCTATATACTAGAAATTTCTTCTAAAAGAGCCCACAAGGTTTCGACTCATCTACAAGATTATCACTGCTATAATATAACTATTGCAGATCATCCCATCTCTTCTCATCTTTCATACTCACAAATTTCTCCATTACATCTTTCTTACATCAATAATATCACCAAAATTCATATTCCATACTCTTATACTGAATCTCAGAAGTCTAAGGAATGGTGTGAAGCAATTGATGCAGAGATACAAGCTATAGAAAATACCAATACATGGGAGATAACATCCTTACCTAAAGGGAAGAAAGCAGTTGGATGTAAATGGGTCTTTACTGTGAAGTTTCATGCAGATGGTATTCTTGAAAGGTATAAAGCCAGGTTGGTGGCTAAAGATTATACTCAAACTGAAGGATTGGATTATACAGAGACCTTTTCTCCTATAGCCAAGATGGTTACAGTGAAGTTGTTGTTGAAAGTTTCTGCTTCTAAGAAATGGTCTCTAATGCTTTTCTCAATGGTGAATTAGAAGAGGAGATTTATATAAAGCTGCCTGAAGGTTATGCTTCAAGATAGGGGGACACATTGCCTCCTAATGTTTTTTGTAAACTGAAAAAGTCAATTTGTGGTCTCAAACAGGCATCTAGACAGTGGTTCAAGAAGTTTTCAGAATCATTGTTGAATTTGGGATTTGCCAAAGGTCATGGAGATCATATCTTGTTTATCAGGAGTTGTGGAGAAGAGTTTGTGGTTGTACTTGTCTATGTAGACGACATTGTTATTGCTAGTACCAATGATGAGATTAGATTGCTTATGTGTTAACTACTAATCTGCAAAAGTGTTTCAAACTGAGAGATCTTTCAAATATTTTTTTGGGATTAGAAGTTGTACGGAATGACGAAGAGATTTCTTTGCGTCAGAGAAAATATGCCTTGGAGTTACTGACATCGACTGGTATGCTTGGCTGTAAACCATCTTCTGTCCCTATGGTTCCAAATCTCAAGTTATCCAAAATAGATGGTGATTTGATTGAAGATGCATAGATGTATAGAAGACTAGTTGGAAAACTCATGTATCTAACTATGACAAGACCAGATATTATCTATGCTGTGAATAAGTTGTGTTGGTATTCATCAGCTCCTAGAACTACTCATTTGAAGGTTGTTTACAAGGTTCTGCAATATATTAAAGACACAATTAGACAGGGCTTGTTTTACTCTGCCTCAGATGATCTGGTTCTTAAAGGTTTTGCGGATGCAGATTGGACATCTTGTCAGGATAGTCGGTGCTCCACCACAGGTTTTGCTATGTTTCTTGGTTCTTCTTTGACATCCTGGAGGTCTAAGAAACAACCTACGGTGTCGCGTTCCTCTGCTGAAGCAGAATATAGAGCTTTGGCTCTAGCTTCTTGTGAACTGGTCTGGTTGCGAGCTCTACTTATAGACTTACAAGTTTCTCCAACTATGGTACCAGTTTTGTTCTCAGACAGTACAACAACTATCCGTATTGCTACTAATCCAGTTTTTCATGAACACACTAAGCATATTGAGGTGGATTGTCATACGGTTCGTGAAAGATTGGATAAGAGTTTACATAAAATATTACATGTGGGTACTGGTGATCAGGTGGCTGATATTCTTACAAAGCCTTTGTTCCCTCATCAATTTGAATATCTGAAATCCAAGATGAGTATCCTTAATATTTTCAGCTGCTCTTCTTGAGGGGAACTAT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

169

Start:

132068  

End:

132236

Strand:

-

>Scaffold10040_LTR-Copia_9

GATCGATCGATCCAGTAGGTCGGTTAAGGCGTCTAGAATTTTCTAAAGGATCTGATCGATCGATCAGATGGGGCGATCGATCGATCATTAAGACGAAAATTTGccgtatgggttgacgatcgagctgagcggtttagatcgatcggtcagagggtcagatcgatcgatc

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

176

Start:

148002  

End:

148177

Strand:

-

>Scaffold10040_LTR-Copia_10

ATTAAAGCAATAAATAAATATCGGAGGCGAGatatgatctctGTCCGTAACTCAAATAAAGCGCCCGTAGTGAGACGGCTATAACACTTTTTGAGCGCCAGGATACAACCAATAATAGACCGATTTCGCAACACTCGAAAACGGAACTTACGAACGTAGTATTCTACAATATACTC

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

4586

Start:

148504  

End:

153089

Strand:

-

>Scaffold10040_LTR-Copia_11

cccccacatgaatagaaataactctaaacagaagaggacTTGAAAGACTCTTTGGATTGAAAAAGCTAAAAAAATCTTTCTTGAGTATATACGAAAACAAACTGTGTCTGAGTTGGTAGCATTTTTCAGCTTTGAACCTCTCATTGTTAATAtccgtcgggtttacttggccaggaggTGAACATGATGTCTTGAACCACCAGGATTTTGATGTAAACCGAGACAACAACTATAACCCAATTACATTTTCTCGTAGAACTATGTTCTCTTTTTGTGTTCATTTTGGCTTTGAACAGCCCTGGTTTTTGATGAGTGAACTTGGAGAATATAGTCTTTACATTCTTTCTCCTAGAAACGGACCCATTTCACACTCACTATGTGATTTCTCTTATGTTTTTCCTTCTTTTCTGAAGCATTCtgctttacttCATTCTGATGAAGACACGAAATCATTAAAAGCTAATTCTTATCCTTAGTGTATACAGATAGCACTTTGTtatcatccttGGAACTGAGTAGAGACCGGAGTCCATCAGTGATTTTGGCAGACTTAGTTTGAATTAGTTGTCCCtttgaacctaTTTTTTGGGATCTCCAATCATGTAGGTGAGGTTTCCATCAAACTTCATCTTTAATTTATAGGCTGTAAACCCATTCATTTTGATGATTTTAAAACCTGATCTTTTgtcagaccttTAGTAAAAGGATCTGCTATATTATCAGCAGATTTGATATAATCCAACGTGATTACACCGGTTGAGATGAGATGTCTAATGGTCTTATGTCGTTTACATATATGACGAGACTTGCCATTGTATAAGTTATTATGTGCACGAGTTATAGTCGTTTGACTAtcacaatgtatacgtattgatgacactggtttttcccacatagggatatcttccaaaagattacgaagccattctgcttcttctgcagctttgtctaaagcaatgaactatgaTTCCATGGTCGATCTAGCCAAGAGAGTTTGTTTGGAAGATTTCCATGACACTGCCGCACCGTCTAGTGTAAAGACATATCCACTTGTggactttgagTTCTTGGAGTCGGAAATCCAGTTAGTGTCACTGTATCCTTCCAAAATTTTTGGGTCTCTACCATAGTGCAACCCATAGTTTTTTGTAAACCGTAAGTAATTCaatactctagTTATAGCTTTCCAATGGGTGTGTCCTGGATTACTCGTGTACCGACTTAATACATGTACTAAGTGTGCTAAATCTGGTCTAGTACAATTTTTTAAGTACATCAGACTTCCGATCACTCGAGCATATTCCAGttgtgatactgATTCGCCTGTATTTTGTCTCAGGTGAAGTTGAGCATCTACAGGAGTTTTTTGCAGTCCCACTTGAGTAGTGTTTAAATCTATCAAGTATCTTCTCTGCATAATGTTTTTAGGATAAAGTGATTCCTTCGGAATGTCCAGTAATTTTAATCCGTAGAATTACATCTGCTAATCCCATATCTTTCATGTCAAACTTTCCACTTAacagggttttagtttgaatgatgatatctttactgctgccaagaaTGAGCATGTCATCGACATATAAACATAACATGACATAACCATTTTGTGTGGTTTTAAAGTAAATGCACTTATCATATTCATTTATGCGGAACCCGTTTGACATCATGACGTTgtcaaatttttCATGCCATTGTTTTGGAGCTTGTTTTAGCCCATACAGGGACTTCACAAGTCTACAGACTTTGTGTTCTTGTCTTGGGACGACAAACCCTTCAGGTTGTTTCATGTAAATTTCTTCTTTTATATCGCCATTTAAAAAAACAGTTTTACATCCATCTGGTGGATTTCCAGATTTCGTAATGCAGCACTGCTTACTAACATTCTGATAGAAGTTATCCTCGTCACAGGAGAATAAGTGTCAAAGAAATCCGAACCTTTTTTTGGAGGAATCCAAAGCACTACAAGTCTAGCCTTGTACTTATCGATTGTGCCATCAATTTTTACTTTGGTTTTAAAAAtccatttacaaCCGAGAGCTTTAAACCCTTCAAGTAAATCGGTCATCTCCCATGTATGATTTTGCATGATGGAGTCGATTTCACTTTTGACGGCTTCCTTCCAGTAAGGTGCGTTAGGTGTAGACATtgcttctgtgAAGGTTCTTGGTTCATTTTCTGTTAGAAAAATCATTAAGAAGTCTTCACCATAGGTTTTTTCCATACGAGGTCTTTTACTACGCCTAGGTTCAAATTCAGCATTTTTCCCCATCATCTATAAATGTGGTAGAAGTGCTTCCCTCGTTTCCAGAGGTATTTGCGTCTCTTTGTACTCTTGTCCGCTTTGGATTTTCTCTATCCTTGCAAGGGAAAAAGTTTTCAAAGAAAGACGCATTTCTTGATTTCATTATTGTAtttacatgaatATCCGGTATATCTGATTTGTGAACCAGAAACCGATAAGCAATACTATTGAGTGCATATCCTAAGAAAATACAATCGACGGTTTTCGGTCCGACTGTGACCtttttcggaagTGGCACTGCAACTTTTGCAAGGCATCCCCACACTTTCAAGTATTTGTATGAGGGGACGGTACCTTTCCAAAGTTCATATGATGTTTTTCCAGTCACTTTGTGTGGAATTTTGTTGAGAATATAATTTGATGTAATCAGTGCTTCCCCCCCCCCACAGGTTCTGGGTTACCCCTGATTCTTGCAGCATTGCGTTCATCAtctcttttagagttcggttttttcgttcctcaactccgttagattcaggtgaataaggagcagtagtttgatgaatgattccattttctttacaaaatacatcaaacggtccttcatattctccacctctatcacttcttactattttaatagtttttccaagttgattctcaacttcaagtttatattccttgaatttttccaaagcttcgtttttgctttgtaacaagtaaatataacagtattttgtgcaatcatctatgaatgtgacaaagtactttttaCCTCCTCTTGTAGGCAAATATTTTAAATCGCACAAATCTGTGTGTATTAAACCAAGAGGTTTTTTTGTTCTTTTTATTTGAGGTGATGGTCTTTTTGTAAGTTTGGCTTGTACGCATACTTcacatttgtctTTACTCGTTTTGCATTTTGGAATTAAGTTCAAATTCATTAATTATTCTAGCGATTTATAATTCACATGTCctaatcgttcATGCCAAATATTAAAAGACTCGAACAAATAAGCAACTTGAGCATTCTTATTCATTGAATCATTGGTTACAACTTTTTTCGGTATGACTGTCATTACATTCATTTTGACTagtccacccttaacaaaacctttgcccaagtacacctcaTTCTTCTTAAGAACAAGCTTGTCCGACACGAAATTGACACAAAAACCAGCTTTGCTCATGAGAGTGCCGGAAATCAAATTCTCGCTCATGTCGGGAACGTGTTTCACGTTGTTGAGAGTGATCTCATGATCGGAAGTCATCTTCAGTATCACTTTGCCATGTCCCAAAATCTTGGAAGAGttggtgttacccatctTAACCCTTTCATCACCCTTGCATTTCTGATAAGTGTTGAACATGTCCTTACCAAAGCATATGTGAGTGGTAGCACCTATGTCATACCACCACTCCATGGGGTTTTCCTCAatcgcattgacTTCTTCAGTGACAACACAACAGAGATCTTCCTTTGTTAAGTAGGATTGATCATGTCTTTTACCTTTAGGCTTGCTACGATATTCTTCAGCCTTATGTCCCACTTTGCCACAATTATGACATTTTCCGTAGatcttcttttcaacaaagGGTTGTTTCTCAACAAAGGCTTGTTTTTTGAAGCTCGTGGATCCAGAGGGTTTCATAATTTTCTTCTGGAAAGTCTTTTCCACCACTTTTCCTTTTCCCTTAGCCTTACtacgttcagccaaatacgcacgatatccagcgtcctcgtggcttgtgagctcggtggagcagcggtttctagcttcaatctgaagcctagagatcaagtcttccagagacattgtctttcgcttgtgtttgagatagtttttgaagtctacccaacttggaggaagcttctcaataaagcaattcactgtgtatggctcacagatcctcatgccctcagcataaatctcattacacaacagttggagtTGTTCAACTTGTGCCATGATGGGTTTGTTGTCCACCATTTTGAACTCCAGAAATTTTGCGACAGCAAATTTTTGGACCCCTGCATCATCAGACTTATATTTCTTCTCCAAAGCGATCCACAGTTGCTTTGCGGTCTTGAATTCATGTTCGTTGTTGTAAACCGAATACAACggatctactaAACGACTTAGGATCCAGCCTCTACACAGAAAGTCTGAGTGTACCCATGTCTCAATGCTGGATATTGTATGCACATCAGTGGCTCCAGGAGGATCGATTGGCTTATCCTCCTTGAGAAACTTATTGAAGTTCAGCGTGGTCAGATAGAacagcatcttctgttgccacgtcttgaagcccttcccgtcaaacttctcgggcagca

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

176

Start:

153994  

End:

154169

Strand:

-

>Scaffold10040_LTR-Copia_12

attaaagcaataaataaatatcggaggcgagatatgatctctgttcgtaactcaaataaagcgcccgtagtgagacggctatagcactttttgagcgccaggatacaaccgataatagaccgatttcgcaacactCGAAAACGGAATCTACGAACGTAGTATTCTACGATATACTC

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1607

Start:

174251  

End:

175857

Strand:

-

>Scaffold10040_LTR-Copia_13

CCCCCTCAAAATGGAGGGGCGGAAGACACTCCATCTTGTTGCGTAGTTGATGGAATCGAGCTCGCTATATTGGTTTTGTCAATGCATCCGCAAGTTGATCTTGTGTATTAACGTGACCCGAAGAACACCTGTTTGAATCTGACCGCGAATGAAGTGATAGTCAAGGGCGACATGCTTCATTCTTGAATGAAAGTTAGGGTTTGCACAGAGAAACGTGGCACCGACATTATCACAATAGACAACTGGAGCTGCAGGGAGGTTGATACCAAGTTCAGTGAAAAGATTGCATATCCATCGGAGTTCCGTGGCCGTGTTTGCAAAAGCACGATACTTAGCTTCCGTGGACGATCGAGCAACACTCTTTTATTTCTTTGAAACCTAGGAGATTGGGTGTGAACCCATATAGACAACATATCCATTTGTAGAGATGTAGTCATCCGAATCACCTGCCCAATCAGCATCAGAGAAGCTGTGAAGACGAAGATCATTACGTGTGGAATAGAAAATACCATGGTCCGTCCTTCCTGCAAGATATCGGAGAATCCTCTCAGCTGCTTGCCAATGTGATTCGGTAGGGGCGAGATAGTCGATTTATCGCATACATGATATCTAACCGAGTGAATGCAAGATATTGGAGGCTCCCTACGAGCTTACGATACTGACTTGGATCCGTGAGAGTGATGCCTTCATCAAGCTTTTATTTCGGTGTTGATACCATGGGATTGGTGACTGGTTTGGTGTCGAGCATATCGTAGCGTTGAAGAAGATCAAGGATGTACTTGCGTTGTGAGAGATGGAGTCCGTGTGTTGTTCATCGGCCTCAATCCTAAGGAAATAGCTGAGATCTTCAGACTCTTTCATCGAGAAACGGTCGGCCATCAATGATAGAATGTTGGTGATGAGCTTTGTGTTATTGCCAGTGATGATAATGTCATCGACATAAACAAGTAGATATAGAGTGTCATGTCCCTTACGCAACACGAAAAGAGATGCGTCAGCCAAAGAGTTAACAAAACCAATCGAGATGAGGTATTGTTGGAGCTCCGTATACCACGCCCCTAGGAACCTGTTTCAATCCATAAACTGCTTTGTGAAGGCGACATACATAAGAAGGTTTGTCTCTGTCAACAAAGCCTAGTGGTTGTTCCATAAAGACTTCTTCAGTTAACTTGCCTTGCAGGAACGCATTGTTGACATCTAATTGAGTAATTGGCCATGACCGTGACATGGCAATGCTCAAGACAAGCCGAAGAGTTGTGGACTTGATAACTGGACTAAAAGTGTCTTTATAGTCCCGACCATATTCTTGATTTTAGCCTTTGGCAACTAATCTCGCCTTACATCTTCCAAGTGATCCATTTGGTAGGAACTTATTCTTATAGACCCACTTGCAGCCAACAACGGTGGATGCAATTAGACGAGGAACAAGTTCATACGTTTGCAAAGGCATCAAGTTCATCAGACATAGCACTCCTCCACGACTATTCTTTAAGCGCTTGATTGATGGTTGTGGGCTTCGGAGGTATGTGAGATGGGAATTTTACCGAGAGATTCAGCTTGGTCGTTGGCTTGACTATATTGTTCTTTCGGTGAGTTGTCATAGGGTG

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

1878

Start:

176182  

End:

178059

Strand:

-

>Scaffold10040_LTR-Copia_14

TTCATTTCCGGCGGGTCGTGCTGGGGAGGATCTGAGACCGGCAGCGCCATTATCGCCGGCGGAGTTGTAGGGAGATGAACGAGTGGGACCGGCTCGGCTGCGAGGTTAGTGTTTGGGATTTTGATTGGTTGAGGAGTCGAGTTTGGTGGTGGGGGAGATTGGAATGGAAAGCTTGTCTTGTCGAATGTCACATACCTGGAGATATAAATTATGCCCGAGTCTCTTTGAAGGCACAAGTAGGCGCTTTGAGTTTGGGAGTAACCGATGAAGACACAGGGTGTGGATCTGTTGTTAAGTTTATGGTTGGTGTAAAGAAGCAGCCATGGGAAGCAGAGACTTCCAAAGATACGCAGCTTGGAGTAATTTGGGTCGCTGCCAAAGAGTCAGTGTCATTGGCGAGAATTGGTGTAGGGGGACGATTGATCAGGTACACTGCGGTGGAGAAGGCGTAGCTCCAGTCAAGAGTGAGAGACTTGTCTCCACGATGTGGCGATGCTTCCTTTAAGAGACGCCATTGTGTTTTGGGGTACGAGATGGTGACATGAAGTGAGAAATTCCAGCTTCAGCGAGAAATTGTTTGAGGGCTATAAACTCAAGCCCATTGTCTGAGTATAACGTCCCTATTTTGGCAGCGAAGCGATTCTCAACCAGAGACTTGAACGGGATGAAGGTATCATGAACTTGAGATTTGGTTTTGAGTGGGTAAAGCCAAGTGTATCTGGTGAAGTGATCGATGAGAATTAAGTTGTATTTGTAGTTGTCTATGGATACATCAGGGGATGTCCAAACAGCAGTGAAGACATATTCAAGTGGGCGCGTGGAGACAATTGAAGTAATCGAAAAAGAAAGTTTGTGACTTTTATTGATGGCACAGTCGGTACAAAATAAATTTTGAGTAGCAGATTTAGTATGTGGTAGAGAGAATTGAGAAACAATGGTTTGTAAAACAGTGCTGCAGGGTGGCCTAAACGGTTATGCCATTCGGCAATGGATGGTTTAGGTATGTTGGAAGCAAAAAAATAACGTAAGGGTATGTGGTGAAACTGGCCACTCGTACAACTCGTCTCTAGCTCTGCCTTGGAGTAATGGGGCCTCCGATCTGAGATCCTTCACCTGAAACGAAGCAGGGAAAaattccacagAGACTTTATTAGTGTTGCATAAACGATACATATAAATTAGATTCTTGTGTATATGAGGAACACCGAGAACATCTTGAAGCTGAATATTATTTGAAGTGGAGGGGAGAGATAATGAACCCGTATGAGTGATAGTGAGACCAGATCCATCTCCGATAAGCACATTGTCATTTCCGTGATAGGGTTGATGAAGCGAGAGATTATGGAGATCGCTAGTCATGTGGTGAGTGGCTCCACTGTCTAAGAGCAAAGCGTTATCTATGGATGAGTTTGTGGTCACATGGTTTGCCCGTGGCTGCCATGGTGAGGGCGTTGGAGACGGCGGTTTGGAGGACTCATCGCGGAGCTGAGGACACCACCTGGCACTATGTCCAAAGACACCACAGATTTGACATTTGCCTTGACATCCTCGACCCCTACCATTCTGTTTTTGAGTGTTGTACGGCTTCGGTGATTGCTGAGAATTCCAAGGCTGATTGTATTGTTGAGTGTTGCGATGCTGAGTAGGTTTTGGGCCGAAATTTGCAGCATTTGCAGAGGCTGGGATCACGGTTGGAGCAGTGGCTGCAGCAATCATAATCTTGGCTTCATGATTCAACAGTTTTTCGTGTACTTCGGTGAGAGTTGGTATGCGATCTCGGCCTTCGAGTTGGACCACAATTGACTTGTAATCGTCCGAGAGGCCATCGAGAACATATTCAATTTGTTCTTCATGTTCGATGGACTTATCAAGCAGCGC

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

582

Start:

179668  

End:

180249

Strand:

-

>Scaffold10040_LTR-Copia_15

CACTAGTTGATCAAATTTCGTGATGAAGCCTTGCATATACTCATCCACGGTCTTGGTTCCTTTTGTCCATTGTTTGAGTTGAAGACGAAGTTGACCCACATGGCCCCAACTTGTGTTGGCATACGTGTCAGCGAGTGTTTTCCAGATGTCTGCGGCGGTAATGGAGCGAGACAGAATAGGCTGAATGGTGAGAGAGACCGCCCCGAGAAGTCCACTGTATATTAACTTGTCTTGGTGTTTCCATGTCGTGTATGCAGGGTTGACAGCTTGAGTGTTGTTGGTGGTGATAGTAGCAGACGGAGGAGCAGTAGATCCATCTAGGTAGCCGGCTAGGCCATAGCCATCAAGTAAGGCATGCACTTGGAGACTCCACATGAGATAGTTGGTGGAGCACAATTTTGTGATATTAGACATAATGATGTTGAGGACTGTTGTTTTTTGAGATAGATCGATAGTTTTAACGTTGGCTGTAGACATGACGATGAGAATGAGAGTAAAAGAAGACGAAGACTTTGTGTTTAGAAAGGAGGGAGGCGGCGCGAGTGTTTGAAAAACAAAATTAGGGTATCTGATCTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

949

Start:

199129  

End:

200077

Strand:

-

>Scaffold10040_LTR-Copia_16

ACTTCAATTTGTCAATCGTCACCGTCTTCGTTAGCATATCTGCCGGATTTTGAGCTCCACTgatcttctcaagtttcaaaatcccatcttctagaagtgaccggataaaatgatatcgcaattgtatatgcttcgttctagaatgaaaagacggattcttcgccagatggataacactctggctgtcgcaatacaagacatcgtcttcctgtttcttgcctaattcttccaagaaactttgtagccacaccatttctttactggcttccgtTATTGCGACATATTCGGCTTCCGTGGTGGAGAGAGCAACTATCTTCTGCAACTGAGAAACCCAACTCACTGCAGTACCTCCCAGAGTGAAAACGTACCCTGTagtgctctttcttgtatcaacattcccggctaagtcagcgtccacatagcctgtcaatatcgtatctccacctttaaaacatagtgccttctttgtggtaccccgcaaatatctgaggatccatttgactgcTTCCCAGTGCTCCTTGCCTGGATCATTCATGTACCTACTAACAACTCTCATTGCTTGCGCAATGTCTAGTCTGGTACAAACCATGGCATACATCAGACTTCCAATTGCTGAGGCGTACagaaccttcttcatgtttgtacgttcctcctccatctttggtgactgttctttcgagagtctgaaatgaacacccaaaggtgtactcactggtttagcattttgcatgttgaatctcgagagtactttattgatgtactattcctgcgataacatcaaggttcttgactttgtatctctgctgatcctcattccaagaatttgctttgcagcgcccagatctttcattgcaaattccttcgacaacttctgcttcaaattattaatctcttgcatgtctgaaccagcaacaagcatgtcgtccacatacaaTAACAGAATAATGAA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

598

Start:

200590  

End:

201187

Strand:

-

>Scaffold10040_LTR-Copia_17

TGTCTTTGTAcatcacattcTCGTTGAATATGACATCTCTGCTTCTGATCATTTTCCGGTTTTTATAATCCCAAAACCCTTAGCCGAACTCATCACCACCATATCCAACAAAGGCACATTTGTTGAACTTagcatcaagtttacttctttccgcagaatcgatgtgtacgtatgagatacatccaaatactttcaagtgtGATAGGTTTACCTCTTTTCCGCTCCATACCTCCTCGGGTATTCCACCATCTAAGGGAACTGAGGGCCCACAATTTATCAAGTAAGCTACAGTGTTAACTGCTTCGGCCCATAACATCTTAGGTAAaccgacatgtatcctcatacttctGGCACGTTCATTCAGAGTTCTGTTCATGCGCTCTGCTACGCCATTCTGTTACGGAGTCATGGGAACTGTTTTCTCCATCTTGATCCCATTACTTGCGCAAAATTTTCTGAATCTTTTATCTGTATACTCTCCTCCATTGTCTGACCTTAACCGCTTCACTTTCAAACCAGTTTTGTTTTCCACCATGGTCTTCCATTTACTGAAGGTATCAAAGACTTCTGATTTCTTCTTCAGAAAATAAACCCACAC

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

419

Start:

220106  

End:

220524

Strand:

-

>Scaffold10040_LTR-Copia_18

ATTTCGGGTTTACCGTAGCATATGATTCAATCATATTAATTTTTGTGGAATAtagtccagaagaaaaagctggcagttcttctaatatatattttctctccgaaatcatttttgtgatgcaaagatattcaatgccatttttattcttggtttccacatgatatcCATTTTTTCGGATATCTTTGAAACTTAACAAATTCCTGTAAGACTTGGGGAATATAATGTCTCATTTATTTCAATCTTTGTTCCCCTTGGCATTGAGAATTGGGCTCTTCcggaacccataataatttttgcatttcccgatatagtatttactccactttttcttaatctcagatcggagaaatattttttatctttcaatatcgtgtgcgtcgttgcactatctgccagacatatatctccatctccgttca

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

114

Start:

220712  

End:

220825

Strand:

+

>Scaffold10040_LTR-Copia_19

TTCACCAAcggctatgatgAATTTTAATTTTAATTTTTTCAAAATTTTACACTTTTCAAACGGTTAGTAATAGTGTTTTTCAATCTATAAATACACTCATTCATTCATTCATTT

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Copia_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Copia

Length:

472

Start:

319604  

End:

320075

Strand:

+

>Scaffold10040_LTR-Copia_20

TTGAAGTTTAATTATGAGTTTATAATTCAAAATCTTATATTGGACTAAACCAAAAGTTAAGCTCAAGTTTTAAAATTTCTCTAGAAATATTATAAAAATTATCATCTCCTCTAAATGTTCTAGAAAATTATATTAATTAAATATTTAGATATTTATATAGAATAATCTAGAAATTTGTAAGATAAAAATCTAGATATTTTAGTAAAATTATAGAGATGATGGTAAAATAATTTAGAACCTTTGTAAGCTATTCTTGGAGGCTATATATACTTCCCCCCTCATTTGTAATTAACTTGAATAAGTGAAATAAAAAACAAGCTTTCTAAGTCTCTCTACGAGTCTTTCAAGTATTCTCTAATTGTTTCCAAATTTTTCTTATCATACTTAGAGGTTTTTTTATCTTGGTTCTTTCAAGTTTCTCAGGGTATTACGGTCTTGGGCTAGTGCTAAGCAATATTAGGGTTTCTTTACA