ID Class Order Superfamily Length Start End Strand View
Scaffold10040_LTR-Caulimovirus_1 RetrotransposonsLTRLTR-Caulimovirus26733002883300554+
Scaffold10199_LTR-Caulimovirus_2 RetrotransposonsLTRLTR-Caulimovirus169806714806882+
Scaffold10273_LTR-Caulimovirus_3 RetrotransposonsLTRLTR-Caulimovirus295170491170785+
Scaffold10273_LTR-Caulimovirus_4 RetrotransposonsLTRLTR-Caulimovirus1638170802172439+
Scaffold10273_LTR-Caulimovirus_5 RetrotransposonsLTRLTR-Caulimovirus3011172719175729+
Scaffold1040_LTR-Caulimovirus_6 RetrotransposonsLTRLTR-Caulimovirus3717736277732-
Scaffold1040_LTR-Caulimovirus_7 RetrotransposonsLTRLTR-Caulimovirus8137775878570-
Scaffold1040_LTR-Caulimovirus_8 RetrotransposonsLTRLTR-Caulimovirus8147857179384+
Scaffold1040_LTR-Caulimovirus_9 RetrotransposonsLTRLTR-Caulimovirus4357941079844+
Scaffold1040_LTR-Caulimovirus_10 RetrotransposonsLTRLTR-Caulimovirus4238002380445+
Scaffold1040_LTR-Caulimovirus_11 RetrotransposonsLTRLTR-Caulimovirus1423512260513682-
Scaffold1040_LTR-Caulimovirus_12 RetrotransposonsLTRLTR-Caulimovirus1714513933515646+
Scaffold1040_LTR-Caulimovirus_13 RetrotransposonsLTRLTR-Caulimovirus216516043516258+
Scaffold1040_LTR-Caulimovirus_14 RetrotransposonsLTRLTR-Caulimovirus85517127517211+
Scaffold1040_LTR-Caulimovirus_15 RetrotransposonsLTRLTR-Caulimovirus1170517214518383-
Scaffold1040_LTR-Caulimovirus_16 RetrotransposonsLTRLTR-Caulimovirus1862518535520396-
Scaffold1040_LTR-Caulimovirus_17 RetrotransposonsLTRLTR-Caulimovirus286520412520697-
Scaffold10689_LTR-Caulimovirus_18 RetrotransposonsLTRLTR-Caulimovirus3153512576515728+
Scaffold10689_LTR-Caulimovirus_19 RetrotransposonsLTRLTR-Caulimovirus3534515770519303+
Scaffold11214_LTR-Caulimovirus_20 RetrotransposonsLTRLTR-Caulimovirus140043125711+

< 1 2 3 4 5 > Total 22


Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Caulimovirus_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

267

Start:

3300288  

End:

3300554

Strand:

+

>Scaffold10040_LTR-Caulimovirus_1

AGTTTTCTCTTTCATCAGTTTCTAAAACTCTCTCTAGTTTTCTAGATCTCAAACATCCTCATAAGCTTTGTTTCTTTCTTTCATACGCAAATAGCGATCTATTCTTAAAGTTATGTTACAGAAGAAATTCTGATAGGTTTAGTAGAGTTTTCGATCTGCTCAATACGGCTTTTATGAGGGGAAATTTTTAACAATGGTTGAGCCATGGGCGAGAGTCGCCTCCGATGCTCCCTTTACCTGAAATCCCTCTTGTCTGTCAACACGACT

Boechera stricta (v1.2)

ID:

Scaffold10199_LTR-Caulimovirus_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

169

Start:

806714  

End:

806882

Strand:

+

>Scaffold10199_LTR-Caulimovirus_2

TGAGGTAAGCGCTGATGTAAGcgacttaaaacctcccttataaataaggatgtacccgtctatgtaagatacaagttttCATTTCTAAAAATATTTTCTCTTTCTAAAACACTCATGTCTCTCTAAGTTTTCTAGATCTCAACATCTTCATAAGTTTTGCTTTCTTTCT

Boechera stricta (v1.2)

ID:

Scaffold10273_LTR-Caulimovirus_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

295

Start:

170491  

End:

170785

Strand:

+

>Scaffold10273_LTR-Caulimovirus_3

TGGTATCAGAGCGCAGGACTTGTGTATgttagtgagaatcattgtttatgttgtttgtttgagtttctggaaaacttaaccatcatcatcaatgtctaactctcaaatcatccattcccctttaaaattttctactttacctaaacacagaaatcaagcatcctcttctaatatagattttCTTTATGAGGTTGAATATGTTCCAGGAGATCGATTACCTGAAACTACTCTCCCTCTTGTAAATCCTTATGAAATATTCGCTAGGAAACCAAGTATCTTTTCTGTTCATGGTGTT

Boechera stricta (v1.2)

ID:

Scaffold10273_LTR-Caulimovirus_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1638

Start:

170802  

End:

172439

Strand:

+

>Scaffold10273_LTR-Caulimovirus_4

CATCTTCCACCAGAAAGGTCAAGGAGTATGTCCAAGCCAGCAAATTCTCCTCATGCCAAGTCCCAGCCACCGaagaagagcaATTCATCTCACTAAACATCCCGGAACATCTTCCAAAGCTTTGGCAACAGCAAAGATTCACACATCTACACTTTGGTGTTGTACGAATCAGACTCACTTGACATGCTCGAAAAGGATTACCGGTCACAACACGAATCGTTTTAGTTGACACCAGACTCAAGACTTATCAACAAGCATGTATAGGCACCGTCCAAGCTACATTAAATGCAGGAACAGTTTTTGTAACACTGTTCCCAACCTTTAATGTTTCTTTAAGAGACCTTAATCTCTTAAAAGCACTCAAAATTCAATTACAGATTGTTGGCGCACCTATGCAAGAGACTAGTGTAATAGCTacactacaccatcagatggtttaccgcgttcaagaccatgctcttgatttggtccttccttcaacagatgaagcactattcctagaagtcacttcagcctcccatgcacctaatgctatccagatccctcgccaaatatcccgagaagaactcatacagaagcttcctgaaacatgggtaacaagttatgaaaaacttcaTCAGGCACCTCAAGGCCCCATTCAGTCTTCCGAAGTATCTTTTCAACCAAAAATGATGGAACGACGGAGACAAAATTCGAGAAGCCGCGAACAtccctatcccGAAGACCGATGTTCATCCAATTCTCCATTCAAGTTGATGAACACGAATTACATGGCTCTTACAAAGACAATACCCAAAGCCAATCTCTTTTGAGTAGGATGGATCAATTTTATATCCCTTCAAGGACGAAAATAGCCATCAATTCTTCGACGTTTTCACCTGTACAGCCTGTACTGAATATGAATCTGATTCTgatgacgagaAAAGAAGAAGACGAAAAGCGAAGAAAGACCCACTCTACAAACAGTATATAAATAGAGATCCAACAGTAGTCCCCTTGGGAGAAGATAATCCAAGAtacgagtatatCGTCCAATATTCCACAAAGAAAAATAAAAAAACCTCCTGAAGTCATGATGTTCAGCCCAAGCAATTTCCCTCCACCTGATGACTTCACGAAAGACGATGTAGCTCATAGCCAAAAAATAATACCAAGTACAGTCATTTATGCTGGACTCGACCAACTAAGTGAAGCAGAAAAGTTCTCAATTGGCAAACAGAGAATGCCATAACTCAAAACCATTACAATCAATCAACAAATGGATCAGATGGCGAATAACTACGGTAAAATATTCAATAACTTACAAAGCTCCATTGCAGAGATCCATGGCCGATTGGACCAACTACACCAAGAAATGTtgtcaatggcACAAAACATGTTGGTGAATACCTCAAGCTTTTGAAGCAAAGAAGCAGAAATGTCAAATCTCAAAAATCAGCTTAAAGATCTTcaacgatgccTTGAAAGTATGAAGCAGAACAAAAAAATGACAGACCCATACTTTCCTCCCTTCACCAATGTCTACATGAAGCCTTCATACCAGGGATCCTATTTCCCAGGATTCCTTTCACAAAATACAACAAGACCAGCAATACCTTCCCAAGGTTTCCTATCATCTGATGAGATATTCACATCCCG

Boechera stricta (v1.2)

ID:

Scaffold10273_LTR-Caulimovirus_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3011

Start:

172719  

End:

175729

Strand:

+

>Scaffold10273_LTR-Caulimovirus_5

CAGAAGATGATATATCGCTCTCAAAACAGTTTGGCATACAACAAGGAGAAAGCAGCATGCCAAAAGAagagccaaacaTCAACGAAGTAGCCAGTGACGAAGAAATACAATTTCAGTATGACCATAATGAAGATATCAGACAAGCAAGACAGTtcgcatcaagaGTCATCACATTCACATTTGATGACATTACCTTTGAAAAATGGAATGAACATCTTGATGAATCCCATGCGTGACTGACTTCTGAAGCCCTTATTTTACCTACTTATCAAGTTATCCAACAATTCACTGCTCGCCTTTCTAGCACACTGAAATAATGGTGGAATTTCCTCGAAGAGTACAAACACCTACAAGTTTACCAAACTACTATCCCAATATTGCTAGGAGAAATCCACAAAGagtttatcggtactcccaaccatatcagagaacaactccaagaagaATACTTTGCAGCAAAATGTTGTTCCTTGAAGAAAAGAGATCTGGCAAAATATTTTGAAAGACAAACAAAAAGATATTATGCACTTGATGGTCTCAACAATCCAAGTTTGAAGCATGTATATCTCTCCTCCAtagacgattatctcagccaacaaacgaagctctacatcagagattaaaaCCAAGCGGTTGAAGAAATTTCCATAGGCCAAATCCAGCAGTATGTCTTCCAGACACTCGATAAGCTCTGAAAGCAGAAAGAATTCTGGTCAGAATTCATGGACAAATCAAAGCATGAATCCAAAGTCTACTCGAAATCCAATTTATCGATCAAATGTTCGAAGAAACAATCTTGCTCTACACGCAGGAAAAGATCTCACAAAACACGGCGTTTCCCAAGAAAATCCCCATTCAGGTGTAAAAGATTCTTTAAAAGAAAACGCACTTTCAAGAAAAATACAAGATGCTTCCTCTGTCCCAAAGAAGGCCACTTCGCAAAAAAATTGCCCTTACAAGTCCAATAAGAAGAAGcaatatctcatCAATTCGATATCCAATATTGTCCCAGAACTTGATATAGATCATCACGATCTTGAATCAATACTCTCATACGATGGTGATGAAAAAGATGCAATATGCGGATATTCAGATTCTGTAGACGACGAATCATCATCTGAAGAAGAAGAAGGATGCTTCAAAATTACAGAAATTCCACATCAAGAAGAGGTCCAGACACCACATCTCCCTGTCACAATTTTTGATCCAGAAAAGGagatgcgtccAGTCCATATTATTGCTTTCTTAGATACAGGAGCTCATACCTCGATTATGAACCCAAAAGTCCTTCTGACATCCATGTGGTTACCATACCAACAAGAGTTCAGAGTTGCAAATGCGGGTTCTCTAAagatcaaactCAAATCAAGACCAATCACCATATAAGTCTTTCCAAGATGCCAGATAGCGACTCAAGTACTTAGATCAACAGCACCAGACAAAGatatcatcctAGGATGGGATTGCTATTATGCCTTAAAACAACTGTTTGACATCTCCATCGAGCATAGAGGAGTCAAATGGAAAAGTTTCTTCAAAGCTTTTCCAACCATCCCAAGACTCTTCACAATCGAAGATCcaatggtgttAAAGTTCGAAAACATCAAAGGAGAAATTAAAAATGTCTCCTGTGCAGATTCTCATAGTGAATTCCTCCAAAAATGCAAGGAGCCATTATGGCTTTATCCGGCGTTCTTCGTATCTCTTCCCTTTAAAGAAAATGTAATCACTATACCAACAAAGGCAAGTCATGCAGGGAtgcctccagcGTTACTACAACAGGCAAATGAAGAAAACGAACAGCTCATTAAATAAGGCATAGTCTCACCAGCAAATTCACCATGGGCCTCCAAAGCTTTCTATGTCAACAAGAGAGCAGAACAAGCACGAGAAAATTTACGGTTAGTCATCGACTAGAAGCCTCTAAATCAATTCCTGCAAGATATCAAGTTTCCACTACCAATAAGAAAAGCAATGCTACAACACTTATCAGGAGCAACCATTTTCTCAAAGTttgatttaaaATCAGGGTTTTGGCAACTTGGGATCCAACCAGAAGAAAGATACAAAACGGCGTTTTGTCTACCTAATCGCCATCTTGAATGGAAAGTTCtaccctttggtCTAAAAACAGCTATGTCCTTGTTCCAGCAAGCAATGTTAAAAATATTCAATTCATTGGTCCACACAACGTGGATCTATATTGATGACATCCTCCTGTTTTCTACAAGTGAAGATGAGCATATCCGAACTCTTAAGCAATTTCATGATATAGTAAAAAATTAtggaatcatgCTCTCAGCAAAAAAGATGATTATAACACAAAAAGAGATCGAATTCCTTGGTGTCAAGATCAATGAaggaagatttgTACCTCAAGCTCACCTTGCCACGAAATTACTCTCTTTTCCTGATGAAAACCTGACGAGAAGGGAAATACAACAATTCTTAGGCATAATCAATTACGTCTATGACTTTATTCCAAAACTGTCCCAGCTGACACAGCCTCTGCGAAAGATGCTCCAAAAGAATCCCCCACAGTGGACTACACGACAAACTGAAGCAGTCAAAAGGCTAAAGCTAGAAATACTTAAGGTACAACCCCTAAAGATTCCTTCTACAGGAAAACGAATAATTCAGACTGATGCTAGTGATAAGTATTGGGGAGCAATTCTGTTCGAAGAGACTAATGGAAAAAGATAAATTTGTGGCTACAGAATTGGTCGTTTCAAAGAGTCAGAAATGCACTACCACTACACATTCAAAAAAATCCTAGCCGTCAAAAGAGCCATTGAAAAATTCGAATTTTACCTGATTGGACACAAATTCAGAATCGAGATGGACATGTCATCCTTTTCCAAAAATGCAACAGTTCAGTCAGAAGATAGTTCCACATCAGcaattgctacgTTGGAGTGAATGGTTTTCAAAGTACGATTTCAAATCCGCCTATTTAAAGGGTACGAAGAACATCTTAGCAGACATGCTCAGCCGTAACTCATTAAAGACAG

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

371

Start:

77362  

End:

77732

Strand:

-

>Scaffold1040_LTR-Caulimovirus_6

AACCAAACTAGGAAGGTTGAGAGTCCATTAGCTATGCTTCGTTGAGAGTTTGACATACTGGTAAAGCCATGGAATATCGAAGATAATTCCGATGGTGTATACCGAGCATAGATACTAAAGGAAACAGAGGACTTCCTCAGGTAAGTTAACGTTCTGGATTCTATAGAGATGAGCAAATGGGTAGTCAGTATGGATACCCATTGGTGCAATGAAGTAGTTGTTGTTGCCATGAGATGACAAGATGATAGATTGGTATTAAAAGATTTTATGTTTGAGGCGTTGGTGGAGTTCTCCGGAATTGATGAGTTCTTGTGCATCCTCAGGCATGTTGTGGTCGAAGTCATAGTATCTTCTCCTTAATGAAGAACTGG

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

813

Start:

77758  

End:

78570

Strand:

-

>Scaffold1040_LTR-Caulimovirus_7

TGTTCTTCGTGCCCTTTAAATAGGCAGATTCGAAATCGTACTTTGAAAACCATTTGCTGGAGCGTAGCAATTGCTGATGTGGAACCATCTTTTGACTGAACTGTAGCATCTTTGGAAAAGATGACATGTCCATCTCTATTATGAATTTGTCCAATCAAATATAACTCGAATCTTTTGATTCCTCTTTTAACGGCTAAGATCTCTTTGAATGTGGAGTGATAGTGCATTTCTGACTCCTTGGAACGTCCACTTTTATATCCACATATTTGTTTATATATCCACATATTTGTCTTTTCCCATCAATCTCTTCAAACAGTATTGCTCCCCAATACTGATCGCTTGCGTCAGTCTAAATTATTCGTTTCCTGTAGAAGGAATCTTTAAAGGGGTAGCTTCTTTATTTTTAGTTTTAGCCTTTTGACGGCTTCAGTTTGTCGCTTAGCCCACTGTGGAGGATTCTTTTGTAACATCTTTCTTAGTGGTTGTGTCAGTTGGGACAACTTTGGGATAAATTCGCTAACGTAATTAATTATCCCTAAGAATTGCTGTATTTGCCTTCTTGTCATGTTTTCTTTAGGGAAAGTGAGTAACTCTGTAGCAATGTGAGCTTGTGGTGCGAATATTCTTTCTTTGATCTTGACGCCAAGGAACTCGATCTCTAATTATGCTATGATCATCTTTTTTGCCGCAAGCATAATTCCTAGCTTTAAACTAAGTCATGAAATTGCGTAAGAGTTTGAATATGATCATTTTCATTGGTGGAGGATTGGAGGATGTCGTCGATGTAGATTAGTGTCATATGAATCAAGGGCT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

814

Start:

78571  

End:

79384

Strand:

+

>Scaffold1040_LTR-Caulimovirus_8

AATACATCAATTCTTAGGGCTAATCAATTACGTCAGCGACTTTATCCCAAAGCTATCCCAGCTAACACAACCGCTAAGAAAGATGTTACAAAAGAATCCTCCACAGTGGGCTAAGCAACAAACTAAAGCGGTCAAAAAGCTAAAGCTAGAAATACAGAAGATACCCTTTTTAAAGATTCCCTCTACAGGAAAGCGAATTATTCAAACCGAGGCAAGCGATAAGTATTGGGGAGCAATATTGTTTGAAGAGATTGATGGGAAAAGACAAATATGTGGATATAAAAGTGGACATTTCAAGGAGTCAGAAATGCACTATCACTCCATGTTCAAAGATATCTTAGTCGTTAAAAGAGTCATCGAAAGATTTGAGTTCTATTTGATTGGACATAAATTCAGAATAGAGATGGACATTGGAAAAGATGTTATAGTTCAGTCAAAAGATGGTTGTACATCAGCAATTGCGACGCTGAAGCGTATGATTTTCGAAGTACGATTTTGAATCTGCCTATTTAAAGGGCACAAAGAACATCTTATCTGTCATGTTCAGTCGCAATTCACCAAAAATAGTCTACACAATGACAAGCCTTTCGGGTACCAATTCTTCATTAAAGAGAAAATATTATGACTTCGACCACAACATGCCTGAGGATGCACAAGAACTCATCAATTCTGGAGAATTCCACCAACGCCTCAAACAGAAGATCTTTTAATACTAATCTGTCATCCTGTCATCTCATGGCAACAACAACTACTTTATTGCACCAATGTGTATTTATCCTCACTACCTGTTTGCTTATCTCTACAAAATCCAGAA

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

435

Start:

79410  

End:

79844

Strand:

+

>Scaffold1040_LTR-Caulimovirus_9

TCTCAACCTTCCTAGTTTGGTTTAGTTTGCTAAATACTTAGAGTAGCAAACTTCGCAACTCAGCCAAGGCTATCAACTTTCCTTTCAAGAAACTAAGAGGTCAAAACAGTAACAACCCGTTCTTTAATCCACATATCATCTACTTCTACCATATGACTATCACCATCAATCCGAAGTCTCAGAAGGTCCATGCAATGCCTATTTTGATTCATCACAAAGATTTCAAGCACGGAGTTCACCCAAACTTTAGCACCACAAATCTTGAAGCTTTTGAGTCATTCCAGACTCATGCATTTCGTCTCAACAACACCAAACAAACGTTCGCCATTCCATATAAGGCAAATTGGTTGTTTTACGACATTGACTATCAAATGAGCCTCGATGAAGACCTCCAGATTTTCATGACGAAAGAAGAACGTGAAGCAGAAAAGAAAA

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

423

Start:

80023  

End:

80445

Strand:

+

>Scaffold1040_LTR-Caulimovirus_10

GTATGAATGCCCTGACGACGGCTATGGATTTTGTGACAAACACATGTTAGAGTTTGAGATGAATCACTGAATCAGCAGCAAGAAGAAGTAAGAAAATATATATGTATAATATCTAAAATAAAAAGATATCAGCAATGATGATGACAGCTATAATATCAATAGAATTTTCTAGAATAAATGATGACAGCTATATGTAAGCGTGACATGAGCATAAGTAGAAATATATAGATTATGTATGAGGTAAGCGTTTACGTAAGCGAACTTGTCCTCCCCTATAAATATGTGTACTCCTTCCATGTAAAATAAATTCACTTTCACAAAAATATCCTCTATCTAATGAGTTTCTAAGTTTCTCTCTAGGTTTTATAGATCTCAACATCTTCATAAGCTTTGTTTCTCTATTTCATACATAAGTTAGCGATT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1423

Start:

512260  

End:

513682

Strand:

-

>Scaffold1040_LTR-Caulimovirus_11

CTTCTGTTCTGCTTCATACTTTCAAGGCATTTTTgaagatcttataattgatttttgaggcttgacatctcagcttctttgcttcgaaaacttgaagtgttgactagcatgttttttgccatagtcatcatttctAGATGCAGCTGGTCCAAACGTTCATGAATTTCTGTTATGGAGCTCTGTAAACTGTTGAATTTTTTGCTGTAGTTTTTCGTCATTTGATCCATTTTTTGATTGATCGTATGAAGGAGTTGATTCTAAGCGATATCATTCTCCGTTTGCCAGTAGAGAACTTTTTCTGCTTGAGTAATTTGAATAGGGCCAGAGGAGTTGATAGTATTTGGAACTAtctttggactatgagcaatatcacccttagtgaaatcttcgaatggtgggaaattgtttggattgaacatcatgacttcagggagttcttgcttttttttctaagatgagtATTCCACAATAAATTCATATCGGGAATTATCTTCTCCAAGTGGACCTACTATTGGATCTCCTTCTAGATATCCTTTGTAAAGAGGATCTTTCTTTGCTCTCATTCGTCTTCTTTTTTCATCGTCAGATTCATAAGCAGCTTCTTCACAAGTTGTACAATTGCAGACATCGAAGAAACAATGTCCATTTTCATCTTTGAATGGATATGCGAATGATCCATCTTTCTCAAAAGAGCTTGGTTTTGGATATTGCTCTTTGtaatggccttggagttctcgttcatcgatttggatagaaaactgcgtgaacaacggtggccttcggaaagaggatgttcttGGCTTTTCGAACTTGATTTCTGTGGTTCCATCATTTCTTGACTGGAATATTGTTTCAGTCGTTTGGATAGGTCCTTGTGGTGCTTGATGGAGCTtttcataactGGTCACCCATGATTCCGGCAGCTTCTGGATTAGTTATTCTCGTGATATTTGGCAAAGAATTTGGATGGCATTTGGAGCTTGAGAAGCTGATGTGACTATAAGAAACAGTGCTTCTTCTGATGAAGGGAGGACTAGATCAAAGGCATAATCTTGGACCTGATAAACAATTTGAGGATGAAGCGTAGCTATCATACTTGTTTCTTGCATAGATGCGTCAACAATTTGTAACTGAACTTTAAGTGCCTTTAAAAGATTAGGatctttcaaagAGACATTAAAGTTAGGGAACAGTGTTACAAAAATTGTTCCTGCGTTTAGGGTAGTTTGAACGGTGCCAATACATGTTTGTTGATATGTCTTTAGTCTAGAATCGACTAAAGCAATTCGTACCGTGACCGGTAATCCTTTTCGAGCATGTAAGGTGAGACCGATCCGCACAAcaccaaagtgTAGGTGTGTGAACCCTTGTTGTTGCCAGAGCCGTGGAAGATACGGTGGGATTTCAAGTGATATGAACTGCT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1714

Start:

513933  

End:

515646

Strand:

+

>Scaffold1040_LTR-Caulimovirus_12

AATGGAAAGTCCTACCCTTTGCATTAAAGACAGCTCCGTCCTTGTTCCAGTAAGCGATGCTAAAAATATTCAAGCCATCGGTTCACACATCCCTAATCTACATCGATGATATCCTCTTATTTTCCAAAACAGAAGAAGACCATGTCAAGACTCTAAAACAGTTTCATGATCTGGTTCGAAaacatggaatCATGCTCGCGGCAAAAAAGATGACCATAGCTCAACCAACAATTGATTTCTTTGGAGTCAAGATTACAGAAGGAAAATTCACACCACAAGCCCATTtagctacataACTACTCTCCTTCCCCGATGAGAATCTGACAAGATGACAGGTGCAACAATTTCTTGGTGTAATCAATTATGTCGGCGACTTTATTCcaaagctgtcACAGCTGACTCAGCCATTGAGAAAGCTGTTGTAAAATAATCTCCCACTGTGGAGTAAACGACAAACCGACGCGGTCAAAAAGCTAAAATAAGAAATTCAAAAGCTGCCACCCCTAAAGATTTCCTCTACTGGAAAAAGAATCCTACAATCTGATGCAAGTGACAAATATTGGGAAGCAATATTATTTGAAGAGATTGACGGAACAAGACAAATTTTTGCCTACAAAAGCGGACGTTTTAAGGAATCAGAAATGCATTATCACTCAACGTTCAAAGAGATTTTAGCTGTCAAAAGagctattgaaaGATTCGAGTTCTACCTGATAGGACATAAATTCAAAATTAAAATGGATATGTCATCTTTTCCAAAGATGCTCCAATTTAGTCAGAAGATAGTCCCTCATCAGCAGTTACTAcgatggagtgaGTGGTTCTCAAAGTATGATTTTGACTCTGCCTATTAAAAGAACACGAAAAACATCCTAGCAGACATGCTTAGTCGTAAACCACTAAACACTATCTATACAATGACGAGCAAACCAAGTTCcagctcttcatcaataagagatctctacgacttcaccgacaacatacctgaagatgcaaaagatcttatcaaatccgaacAATTCCACAACCGCGTCAATCAAAAGATTTTCAGATACCAGTCCATCATCATCTCCAATCATGGCAGTGAAAATCGGTATATATCACCACTTGGTATCCATCCTGACTACccatttgctcACCTCTACAGAATCCAGAATGTCAACCTACTCGAAGAAGTTCTATGTTTTCTCAAGTACCTTTGTGCGGTATACACTATTGgaattatcttTGATATTCCATGGATGTACCAATACAACCACAGCCCGAGTTATGCAGCCAACGACCTTtcaaccttccTAGGATGGTTCGCTACAATGAATGTCTGGAATACCAAGCTCCACAACTCAGCAAAAACGCCCAACTACCCTTTCAAGAAGTTAAGAAGCACAACCAGCTATAATCCATTTTTCAATCCACATACCATCTACTTCTTCAAACGACCTATCAACATCAATCCAAAATCTGGAAAGGtctacgcgatgCCTACTTTAATCCATCACAAGGATTTCAACAAAGAAATACGTCCATATTTTAATATGGCAGACAATGAAGCATTCGAAACCTTTCAGACTCATGCATTTAACCTCAACAACGCAACACAGAAGTTCGCAATTCTCTACAAACCAAACTGGTTATTTTATGAAATTGACTATCAGATGACGTTTGATGAAGACCTCCGATGGTTCATGTCAAAGCAAGAGCAagaagcagaagA

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

216

Start:

516043  

End:

516258

Strand:

+

>Scaffold1040_LTR-Caulimovirus_13

TAATGTATAAAGTGTGTATGCAGTAAAGTATATGTGATGGATGAGGTAAGTGCTTACGCAAGCAActtaatcctcTCCTATAAATAAGTGTGTACCCCCTATGTAAGATATAACTTTCATTCTATAAATTTTTTTCTCTATCTAAACTCTCATGTCTCTCTAAATTTTATCTAAGTTTTTTAGATTTCAACATTTTCATAAGCTTTGTTTCTTCCT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

85

Start:

517127  

End:

517211

Strand:

+

>Scaffold1040_LTR-Caulimovirus_14

AGCAGTTCATATCACTTGAAATCccaccgcatctTCCACGGCTCTGGCAACAACAAGAGTTCACACACCTACACTTTAGTGTTGT

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1170

Start:

517214  

End:

518383

Strand:

-

>Scaffold1040_LTR-Caulimovirus_15

GTTCTTCTTCTTGtcttggtaatTTTGTAATCTTATAGCATCCTTCTTCTTCAGATGATATTTCTTCTTCTTCCGTGTCTGAATATCCGTATATCGCATCATTTTCATCGCTGTCATAAGATAAAATTGACTCAAAATCATGGTGATCGAGATCAAGTTCTGGCGTTATGTTGGATATGGAATTGACGAGATACTGTCTTTTTTTCTTGGATTTGTTTGGATAATTTTTTACAAAGTGTCCTTCTCTGCGACAGAGAAAACATTTTGTTGTTTTCTTGAAACTTCTTTTCCGTCGAAATAATCTTTTGCATCTGAATGGAGGCTTTCTTGAGAACTTCCTGGACTTATGAAAGTTCTTGCAGTCGCTACACGAACATGATTTCTTTTTGGAACACTTGATGGATAAGTTAGATTTGGAACATATCTTCGTTAAATGCTTTGAGTTGTCCATGAATTCCGTCCAAAACTCTTTTTATTTACAGAGTTTGTCAAGTGTTCTGAAAACGTATTGTTGAATTTGGCCAATGGAGATTTCTTCAATCGTCTAGTTTTGATCTCTGATATAGAGCTTCGTTTGTTGGctgagatagttGGGAATGGATGAAAGATAGATGTGCTTCAAACTTAGGTTGTTAAGACCATCAAGGGCATATTATCTTTTCGTCTATCTTTCAAAGTGTTTTACAAGATCTTTCTTCTGGAGAGAACAACATTTTACCACGAAATATTCTTCTTGTAACTAATCTTTGATATTATTAGGAGTGCCGATGAATTCTCTATGAATTTCTCCTAACAGTAGCAGAATGGTAGTTTGATGGATTTTCATTTGTCTATAATCTCCAAGAGAGTTCCATAATTCCTTTAATGCTCCAGAAAGACGAGCAGTGAATTATTGAATGACAATATGTGTTGGTGAAGTAAGGGCTTCAGAAGTCATCCACGCATAGAATTCATCAAGACGATCATTCCATttgttaaacggAATGTCATCAAATGTGAATGTTATGACTTTTGAAGCAAATTGTCTTGGTTGCCCATTTTCTCCATGGAATTGGCGATAATCGCGCATTTCTTCATCTGAATATACTTTATCTATGTCAGGTTCCTCTTTAggagtgtggctTCCTTCACCTATGGCGAATTATCTTGGAAGGGATTCCTCATCTTCTG

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1862

Start:

518535  

End:

520396

Strand:

-

>Scaffold1040_LTR-Caulimovirus_16

CATTGAgaactcaatgATACCAATTTCTTCAGCCTTGCCCTTTTCTTTGTCTTCTCCTCCTTTTTGTTATTCAAAAGAGTCGTGGCTTGATGGTGAGGAAAAGAGAATTAGTTTTTTAAATGGTTGGGCTGACGTTTCTTTTTCTTTGTATCTCTTTGTTTTCTCCCGATATATTGGCTTGAATGTTGGTAAAGATGGCATAACAtaacaggatgTGAACACTTCATCAGATGACAAGAAACCTGCTGAAGGTGTGACTAGTCTTGTACTGCCTTGTGAAAGAAATCCCGGAGAGTAAGATTTTTAATACGAAGGTTCTGTATCTATATTCCCGAATGGAGGGACAAATGCATCTGTCGATCTTCTGTTCTGCTTCATACTTTcaaggcattttTGAAGATCTTTTAATTGATTTTTGAGGCTTGACATCTCTCCTTCTTTGCTTCAAAAACTTGAAGTGTTGACTAGCATGTTTTTTGCGATAGTCATCATTTCTAGATGCAGCTGGTCCAACCGTTCATGAATTTATGTTATGGAGCTCTATAAGTCGTTGAATCTTTTGATGTAGTTGTTCGCCATTTGATCTATTTTTTGATTGATCGTATGAAAGAGTTAATTCTGAGCGACATCATTTTCCGTTTGCCAGTTGAGAACTTTTCCTGCTTGAGTAATTTGAATAGGGGCACGGGAGTTGATAGTATTTGGAACTATCTTTGGACTATGAGCAATATCACCCATAGTGAAATCTTCGGATGGTGGGAAATTGTTTGGattgaacatcaTGACTTCAGGGAGTTCTTGCTTTTTCTTCTGAGACAAGTATTCCATAATAAATTCATATCGGAATTATCTTCTCCAAGTGGACCTACTATTGGATTTCTTTCTAGATATCCTTTGTAAAAGGGATCTTTCTTCGCTCTCATTCGTCTTCTTTTTTCATCGTCAAATTCATAAGCACCTTCTTCACAAGTTGTACAATTGCAAACGTCGAAGAAATAATGTCCATTTTCATCTTTGAAAGGATATACGAATGATTCATCTTTCTCAAAAGAGCTTGGTTTTGGAAATTATTCTTTGTAATGGCCTTGGAGTTCTCGTTCATCGATTTGGATAGAAAGCTACATGAACAACGGTGGCCTTCGGAAAGAGGATGTTCTTGGCTTTTCGAACTTGatttatgtggttccatcatttcttgactggaatattgcttcagtcgtttggataggTCCTTGTGGTGCTTGATGGAGCTTTTCATAACTGGTCACCCATGATTCCGACAGCTTCTAGATTAGTTATTCTCGTGATATTTGGCAAGGAATTTGGATGGCATTTGGAGCTTGAGAAGCTGATGtgacttcaagaaacagtgcttcttctgatgaagggaggactagatcaagggcatgatcttggacccGATAAACAATTTGATGATGAAGCGTAGCTATCATACTTGTTTCTTGCATAAGTGCGCCAATAATTTGTAACTGAACTTTAAGTGCTTTTAAAAGATTAGGATCTTTCAAAGATACATTAAAATTAGGGAACAGTGTTACAAAAACTGTTCCTGCGTTTAGGGTAGTTTGAACGGTGCCAATACATGCTTGttgatatgtctTTAGTCTAGAATCGACTAAAGCAATTTGTGTCGTGACCGGTAATCCTTTTTGAGCATGTAAGGTGAGACCGATCCGCACAACACCAAAGTGTAGGTGTGTGaacccttgttgttgctagagccgtggaagatgcggtgggatttcaagtgatatgaactgctcttcttcggtCGCTGGAACTTGGCAGGAAGAGAATTTGCTGGCTTGAACATATTCTTTGATTTTTCTAGTGGAAGATGG

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Caulimovirus_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

286

Start:

520412  

End:

520697

Strand:

-

>Scaffold1040_LTR-Caulimovirus_17

AACTTCTTTGATAGAAAAAAGTCCAGGTTTTTTAGCAAAGATTTCATAAAGATTTATAAGAGGAAGAATAGTTTTGGAGTGACGATCTCCGAGAACATATTCAACTTCATAAAGGGAATCTATTTTAGACGAAGATACTTTTTTTTTTTTTTTGATTTTGATAGAAATTTGAAAAGGGAAAGGAATAACTTGAAGATCATACGTGATGATGAGAATTAAATTTTCCAGAAGAACAATGAACATAAATAATGATTCTCCCAAACATACACGAATGGTTGGCTCTGAT

Boechera stricta (v1.2)

ID:

Scaffold10689_LTR-Caulimovirus_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3153

Start:

512576  

End:

515728

Strand:

+

>Scaffold10689_LTR-Caulimovirus_18

AGGTGTTCCAGACAGCAAGTCCTCGGTTCAGGTAGTAAGACCGTTGGTAAGCCGCAGTTGtgtcaacgaaGAAACTGGTTAGTACTCCCTAACCTTAGGTTTAAACTGAGTCTGAAATCATGGCTTCGTCTATTAAAATTGTTTTTAAATCTAAATATGCAGGATCCGCATCTCATAGTACAATTAATTCAAGAGAAATTATATCAAAAATAAcctctttaaacaatgaactatcaaaaaaccaattaccacatataaatccagataacatatatcaaatcggtacttttgattttaaaacagcctatgcaataaaagaacacgaacaaactttatcattacagaaagaatttgaagaaataaaattattatcttcaattgctttagataaatacaaacaaaagggatttaattatattcattttggacttgttcaaatagctattaaaccattatcaagaactggtattgattcacctatactaatgctattaaggaataaaaccTTACTAAAATTTGAAGATTCACTCTTAGGAGCAGTACAATCAAATTTATGTAATGGAGCAATCTACTTTAATTGTGCACCTAATTTTTTGGTAAGTTTACATGATCCAATAATACTCAACACTTTAGTTTTAAATGTTCATTTACCGGAAATTAAATTtcaaaatgaacGGCATGGATATTTATTACTATACCGAATATACTTTAAACAATCAACATCTGAATTTAATCCTAGATGTTAATTACAAGATGACAAGGGAGAAACTACAatattatcagTACATAGTAAAGACACACCAACTGCTACTTATGCTCCTCAACAATTAAAATGGAATGAAATAACTATTCTAGACCAATGGAAAATAGAAATAACACAGCCTCCTAGAAATTTTGAACAAAAAAATATTTCAAGAATTATTGaacaaaatgaTGGAAAAATACTATTACAATTTGACTCATTTAGAGATCCATTACCACATAGAATAAGTTCTTATCACTCACGAGTTTCTTTTTCAGAATATCGTACTGGCCCATCTAGTACGGAATCTGATACTGAAAgtataaaccaAAAAATTAAGCAAGACAATTCAATCAAATTCAAAGCACCTATAGCTGAACCTGAAGAAGACATGTATCACACATCTCCTACACCATCCGATTTTAAATCAATAAATGTTATAAATAAAAatttcgaaatCAACAAACAATATCTTAAAGAAGACTTTTACTCAATAGAAAATAAAGAAAAAAGAGAATGGTATTTCAAAACATTTTCCAAACATCAAACAACTAATTTTAGAAAAATTTGGTACGAAATCATGACAATAAAAGAAATAACTATTCCATTTTttatatggtttGAAACCTATTCAACTGAATATAATATTGATTTCCCGTTCAAATCAATAAGCACTAGTTCAACCCTAAGTCAAGTATGGGAACATGTTGATGGTAACAAAGTTAAAGCAATCCATCCACCATTGAAAGATttaaaaataaaTACAACAAACCGGCAAATTATTGCCACTCCTTTTAAAACTGGAGCTAATAGAGAAGATAAAGAACTAGTAATTGTAAGTGATATCAAACCTATATATCAACAAAATAATTTTCAAAgccaactaatctatacaatatccaaACAAGTAGATCATATAGATAATAAACTAAACACCAACGAATCTAAAGGAATATATCAATATAATAAAAATATCCAACATCCCTTTtcatctacttCCACGCCAATATTTAAACCAATAACTAGACAAATAAAATTTTCAGATAACGAAATTCTAAAATCAATAGCATCAAAATTAGACAAATTAGATaaaggaaaagaaataaataatatagacgaaaatgataatgaatctattcaatCACTCACGCAATCTGAAAATGAAACTCAAGAAGTAAATCGCATTAAAAATTAAAATGATGAAATCTAATAAACCTTACTACAAAAAACATCCTCCACCTGACTTATTATTTGAAGAACACCATAATTATTCCaataatatataTACTGGTGATGGTATATATGAATGGAATATAGATGGATGCTCAGAATATGAAATAATGAATTTAATCCAAGAAATGGGTATGGCGGCCATAGCCTATAAAGGTAAAGGTAATACTGATAAGCAAGCATGCGTGTTATTAATTATTGGGTTTAATGGAGCATTGAAATATTggtgggataatTCGTTAGATCTAATTACGCAAGATTCGATTATAAATCACGTTGAAACAATAAGAGTAGAAAATGAAGATGACCTTTATGAAGAACAAGAAAAACAAAATGCTGTAGAagtattaattcATACTATAACTATGCATTTTATAGGAAATCCAATTGAATAATTAGAAAGCAAAAAAATTATATTAACAAACTTAAGATGCCCAACAATAGGCGACTTTAAATGTTATAAAGATATATTTGTTACCAATATATTTCAAATGCATGATTGTAATCAACCTTTCTGGAAAGAACGATTTATCTCcggattaccgtCTTTCTTTGCAGAAAGAATAATTAACAAATTAAAAGACTATTTCGGTGGACAACCGATCCTCTAGAATACAATAGCATATGGACAATTATTTGCATTTATTAAAAAAGAAGGATTATCAATATGTcaagaacataaggataaaaaacgaaACGAAAAATTTAAATTTAATTTAACTATGGGTTCATTCTGTGAGCAATATAGTTATAATAGATTTAATCCACCCTCCAGAATAAAAAGTATACAATAAAAATAAAGAAAAATACATAATAGATACTATAAAAAACATAAACATTATAACCAAcaagcagataataaacattattctaaaacaaaaaactattcaaaaaatacaaagaattataaaccaaaacaaaagatagtatgctggaattgtaaaagaccaggccatacatctaaataatgtcgaatgaaaaagaaaattaatgaaatatttcaagatcaacctgatATACAAGAAAAGTTAACTAAATTATTATTATCCGAATCAGAATCCTCTAGCGAAACAGAAAGCAATTACTCGATAAATGATATAGAAAATTCAAGTGATTCTTCTACTGAATCTCAAGAATTatcagataacctatgtaattgtaaaacaattaatgtcataact

Boechera stricta (v1.2)

ID:

Scaffold10689_LTR-Caulimovirus_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

3534

Start:

515770  

End:

519303

Strand:

+

>Scaffold10689_LTR-Caulimovirus_19

AATAGATAATCCGAAATTAAAAAAGAATATTTATTGAAGCTAAAGGAAATAGTGTATCAAGAAAATCAATTACAAAACCCACAGCCTTTTAGTCTAAATAAAATAATTGAAAAATATTCAACTCAAAGTTTATTTAAGCAAGTAACTACAGGAGAATTACAAAATGAAATTAAAAATTTAAAAACACAAATCAAAGAATTACAGCTTGCGGTTAATCAGCAAGAATtaaatcaattacaaatagatgctagactaaaactagtagaaacaacgaattctcaagcctctacaagtcataaaaatttagaagaagataacaattatatccaaaacattaataaaataaattatcaaaaatggtttACAAATATTACTCTACATATAGGACATGATTTTCAAATAAATACATTAGCTTTAATAGATTCTGGAGCAGATTATAACTGCATTCGTGAAGGTTTAATACCAACTAAATATTATGaaaaaacaactgaacgattaagtggtgccaacggaaGTAATTTAAAAGTACAATATAAATTACCAAGTGCAAAAATATGCAATCAATAATACTGTTTTAAAAACCAATTTATCTTAGTCAAAAATTTaacccaagaagTTATATTAGGAACCCCTTTCCTTACTCAAATTTATCAATTCAAAGTAACAGAATTAGGCATAATAACAGAAGTAGTAGGGACAAAATTATCATTTAATTTTTTATCACCTATGAAATCTAAAGAAATTttatatctccaacaaaatactattcgaaaggtaataaatttaataaatggaaaacaacagcatgttcaatatctacaagatgaaataacgtacaaaaaaatagaagaacaactaaaaacatcccgtattcaagaaaaaataaaaacaatagaaaaagatttattaaaccaggtatgctcagaattaccaaatgtattttgggaaagaaaacaatattgtgtTCAACTCCCATACATAAAGGACTTTAATGAAAAACTTATACCAACCAAAGCACGACCTATTCAAATGAATAAAAaattattagaaCACTGTAAACAAGAAATAAATGATTTGATAAAAAAAAAACTTATTAGGCTTTCCAAATCCCCTTGGAGTTGTTCGGCCTTTTATGTAAACAACCAAGCTGaaaaagaacgaggagtaccacgaTTAGTAATCAACTACAAACCACTTAATGATGTCTTACAATGGATTAGATATATACCCAATACCTAATAAAAGGGATTTACTAAAATGACTTTATGATGCTAAAATCTATTTAAAATTTGATATGAAGAGTGGATTCTGGAAAATACAAATTGATGAACAAGATAAATGTAAAACGGCATTCACTGTCCCATTCGGACATTATGaatggaacgtaATGCCATTCGGACTTAAAAATGCTCCTTCAGAATTCCAACATATAATGAATGATATATTCAATAATTATTCAAAATTTACTATCGTTTatatcgatgatgtgttagtatactcacaatCTATAGATCAACATATTAACCATTTATATACATTCTTAAACATAATAAAAGATCATGGATTAGTTTTATCCGCTAAAAAAATGAGTTTATTCCAAACAAAAATAAGATTTTTAGGCCATAACATAtatcaaggaacaatcacaccaatagcaagatctatagaatttgcagataaattttcagacgaattaagagaaaaatcacaattacaaagatttttaggatgtctaaactatgtttcggatttccttccaaaccttaggaaaactatccaacccttatttcagcgattatagaaaaatcctAAACCTTGGACCGATATCCATACAAGTCTAGTTCAACAAGTTAAACAAAAAGTCAAAACCTTACCATGTCTAGCAATACCACATTCACAAGCCAGTATGGTAGTAAAAACCGATGCCTCTGAAAAGGGTTACGGTGGTATACTAAAACAAAAACTACCAGCCTCTACCCAAGAGTTTATAGTTAGGTTTCATTCTGGTATCTGGCTAGGACCCCAAAAAAAttattcaaccgTTAAAAAGGAAGTTCTTTCGATTGTCAACTGCATTTCAAAATTTCTAAGATGATTTAATAAATAAATAAAAATTATTACGCGTTGACTGTAAGTCAGCAACAGAAATTTTACAAAAAGATGTCAAAAATTTAGTTTCAaaacaaatttTTGCTAGATGGCAAGCTATTTTATCTGTTTTCGATTTGATATTCAATACATTAAGGGAAAAAATAATTCCTTACCAGATTTTCTAACTAGAGAATATTTACAGGGcaaaacaagtgATATTCAACAAAGTATTCAAGATGAGTGAGTCAAAGAATAAAAAACTGATGACGGCATCGGATTACATAAAAAATCAGCCCCATCTCCAGGGCAAACCACTTACTATTCAAAACCCTTTTTCGGCGCTCGCCAAATTTCTACCATTATCTTATTACAAAGCAGCAGCAGCAGACAGCGGTCAACCTTCATCAACACCTGCTCAAGCttctacccaatcaacaaagtcaacctattattcaaaacagcaaaaacaacaccttataaccacccaattcaccaaatccattaccctcaaagaactccaacaatttaccaaaagaatcttttatgatgacaatctctaccttactgacaacctcatcaaaaatcgtaccttttatGAGTATATTCTAGTAGACTCTAAATCAGTCGAAATTACTCATTATCCAGATAAAACCAACCTTAACCTCATTTCCTACTCTACCTGCAATCCTTAAAATCGGTTCTATCCAAGACCTTGGTTTTATTCACCACCATACCTAAAAACCATTTTCCACCCCCGGCTACCATATTCCTGGTTATACCTATGTTGATTACCAAAACGCCTTCTTCCAAACCTTCTATCTTTGACCTTACGACCACTCCTGGTTCATATCCTTTGATCCAAACTGTCCTAAAtcaatcccaggatggtttaacgaatggtggtattggttcggaccttccgaccctatttatccACAAGACGTACTCAAAACATCTTTCCCTCACTACATCAAACACTTACCTCTCGGTCCACTATCCAAAATCTCTTTCCACATTGACATGGGTGTTCCTTGGATTTGTTCATGACATTTCAACCTTGCACTTCATAAGCCAGATATGCCTTACTCCCTTATCCGAGAATTCCACATCAAATGGTGGGATAAGTATAACCTTACCAGATGTTCCCTAGCCAACAtctcccgtttctttgaaattcatcatcaactccacaccgctatcaaagtcgtctccaaatccattccttTAGTCAAACCTGACCAGTTTACTCAATCAACGATAAACCAATCCAAACCTCCCAAACAACATCTGGCATCTAGCCCCACACACTCTACCGGCTCTTCAACCACCAAACGGTCTTCTAAAAAAGACAAACTCAACAAGATTCTCGACGCACTTCGTCaacaaatggaaTCTTCCGACGACGAAGACATTATGCAAGAAGACGATCCCTACGGCGGACCT

Boechera stricta (v1.2)

ID:

Scaffold11214_LTR-Caulimovirus_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Caulimovirus

Length:

1400

Start:

4312  

End:

5711

Strand:

+

>Scaffold11214_LTR-Caulimovirus_20

AGAAAATTATTTGAAGAACAATTATGTTCAGATCTACCAACTGCCTTCTGGGATAGAAAACAACACATtgttgatctaTCCTATGAAGAAAAATTTAATGAAAGAGAAATTCCTACAAAAGCTCGACCAATTCAGATGAACTCTAATTTAGAGAGTcattgtaagaaAGAAATTTTAGAACTTCTAAACAAAAAATTAATTTCGAAGTCAAGGTCTCCATGGTCTTGTGCTGCTTTCTATGTGAACAAAAATTCTTAAATAGAATGAGGAACTCCAAGACTTGTAATAAACTACAAACCCTTGAATTCAGCATTAAAATGGATTAGATATTCAATACCTAATAAAAAAGACCTCCTTCAAAAACTTTATTCTACACACATATTTTCAAAATTCGATTTAAAATCAGGTTTTTGGCAAATCCAAATATTTGAAAATAATCGATATAAAAAAACATTTATTGTTCCTTTTGGACAATACCAATGGAACGTGATGCCTTTTGGTCTAAAGAATGCACCTTCAGAATTTCAAAGAATTATGAATGATATATTCTCAGAATAATCAAAATTTTGTATAGTTTATATGGATGACATACTAAACTTTTCAAAATCTATTGATGAACACGTTACACATCTAAAAACATTTTATTATGTTGCACGAAAAAATGGACTTGTTCTTTCAAAAACAAAAATGACTTTATTCCAAACCAAAATTAGATTTCTTGGTCATTACATAtccaaaggaaTGATAAAACCAATAGAAAGATCTTTAGAGTTTGCGAATAAATTTCTTGACAAACAATTGGACAAAACCCATTTACAAAGGTTCATAGGAAGTTTGAATTATGTCTTAGATTTTTGTCCAAATATTAATAAATAGCTAGACCACTACATGATCATTTAAAAAAAAACCCAACCCCTTGGACTAAAGAGCATACCGCTCTAGTCCAACAAATTAAAAAACAAGTCTTAGAAATTCCTTGTCTGCACACAGCAGACCCGAATTTAGAGAAAATTGTGGAAACAGACGCCTCTGATATAGGATACAGGGGTATTCTGAAACAAAAGCAAACCACCGGGCGTGAAAATATAATTCAATTTACGTCTGCTCATTGGAATGAGACTCAAAAAAATTACTCAACTATTAAAAAAGAAATATTAAGTATAGTTTTATgtatacaaaaaTTTCAAAGCGATCTTTTAAATCAAATTTTTTTACTAAGAATTGATTATAAAAGCGCCAAAGATGTTTTACAAAAAGATGTTAAAaatcttgcttcAAAACAAATTTTTGCCCGATGGCAGGCTTTACTAAGTATTTTTGATTTTGATATAGAATATATTAAAAAAGAAACAAATTTTATTCTGGATTTCTTGACTCGAGAATTTCTCCAAAACAGGTAC