ID Class Order Superfamily Length Start End Strand View
Scaffold10040_LTR-Cassandra_1 RetrotransposonsLTRLTR-Cassandra346907669908014+
Scaffold10040_LTR-Cassandra_2 RetrotransposonsLTRLTR-Cassandra9914246951424793-
Scaffold10040_LTR-Cassandra_3 RetrotransposonsLTRLTR-Cassandra35315308291531181-
Scaffold10040_LTR-Cassandra_4 RetrotransposonsLTRLTR-Cassandra10615311831531288-
Scaffold10040_LTR-Cassandra_5 RetrotransposonsLTRLTR-Cassandra35415312921531645-
Scaffold10040_LTR-Cassandra_6 RetrotransposonsLTRLTR-Cassandra36724373982437764-
Scaffold10058_LTR-Cassandra_7 RetrotransposonsLTRLTR-Cassandra255308279308533+
Scaffold10058_LTR-Cassandra_8 RetrotransposonsLTRLTR-Cassandra276312402312677+
Scaffold10058_LTR-Cassandra_9 RetrotransposonsLTRLTR-Cassandra92312654312745+
Scaffold10058_LTR-Cassandra_10 RetrotransposonsLTRLTR-Cassandra343312747313089+
Scaffold10058_LTR-Cassandra_11 RetrotransposonsLTRLTR-Cassandra105313095313199+
Scaffold10058_LTR-Cassandra_12 RetrotransposonsLTRLTR-Cassandra308313201313508+
Scaffold10199_LTR-Cassandra_13 RetrotransposonsLTRLTR-Cassandra112682653682764+
Scaffold10199_LTR-Cassandra_14 RetrotransposonsLTRLTR-Cassandra341682766683106+
Scaffold10273_LTR-Cassandra_15 RetrotransposonsLTRLTR-Cassandra27729323182932594+
Scaffold1040_LTR-Cassandra_16 RetrotransposonsLTRLTR-Cassandra90550813550902-
Scaffold11797_LTR-Cassandra_17 RetrotransposonsLTRLTR-Cassandra32989959323+
Scaffold11797_LTR-Cassandra_18 RetrotransposonsLTRLTR-Cassandra10594889592+
Scaffold12302_LTR-Cassandra_19 RetrotransposonsLTRLTR-Cassandra109209505209613+
Scaffold12302_LTR-Cassandra_20 RetrotransposonsLTRLTR-Cassandra287209613209899+

< 1 2 3 4 5 > Total 14


Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

346

Start:

907669  

End:

908014

Strand:

+

>Scaffold10040_LTR-Cassandra_1

TGTAACACCCAATTTCTAGAAATATGGTGATGCACGAAAAGAGTTGATTTGCCTACCTATATCACCAAAGTCCATTTATCTTTTTCGTCAAACATCCTAATAGAACTCTAGAGTTAAGCGTGTTTGGACTGTAGCAATTTTAATATGGGTGACCTGTCGGGAAGTGATTTCCGATACTGTGTAAGTGAAGACAAAATACGAAAAAAAAATATTCTGGTGATTTGTAGGGTCGGTAAACAAGTCTGTTAAGCCTCCGGAAATAGCGAACCGGCTGTCGGACGAGGATGGTAACACAGGCCCAGAAAGGGCTTGGGGAACCACGAACAGTGGCGGTCGAGTCGTTACA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

99

Start:

1424695  

End:

1424793

Strand:

-

>Scaffold10040_LTR-Cassandra_2

TAACGCCCCAACCGTCCCCGCCCGTGGTCCCATGTCCACTCTGGTCCATGGGCCCCATGCTCGTCGGACGGTCGGTTCGTTGCTTCTCAAGACTTTAAA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

353

Start:

1530829  

End:

1531181

Strand:

-

>Scaffold10040_LTR-Cassandra_3

TATAACGCCCCCAACCGTCCCGCCAGTGGTCCCATGTCCACTCTAGTCCATGGGCCCCACGCTCGTCGGACGGCCGGTTCGTTGTTTCTCAAGGCTTTAAAGACTTGTTTACCGACCCTACAAATcaccacgtgatCTTTCCCCGTGTTTTGTCCTCACTCACACGGTACCAGAAATCACTTTCCGGTAGGTTACACATCCTGAAATTGCTCCAGCTCAAGCACGCTTAACTCTGGAGTTCTCTCGGGATGGTCAACCGAAAAGAtaagtgcactttggtGATATAGGTAGCCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCAATTTCCAGGTGTCGGGGTGTTACA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

106

Start:

1531183  

End:

1531288

Strand:

-

>Scaffold10040_LTR-Cassandra_4

TCACCCCACTAACAGATCGCAACGTCCTCGTTGCGCACCAAGACCGTCACCCCGACAGCGTGAGCCCTCTTGACTACATGTTTGTCTGGATTCAGCTCTGATACCA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

354

Start:

1531292  

End:

1531645

Strand:

-

>Scaffold10040_LTR-Cassandra_5

TATAACGCCCCAACTGTCCCCGCCCGTGGTCCCATGTCCACTCTGATCCATGGGCCCCACGCTCGTCGGACGGCCGGTTCGTTGCTTCTCAAGGCTTTAAAGACTTGTTTACCGATCCTACAaatcaccacgtGATCTTTCCCCGTGTTTTGTCCTCACTCACATGGTACCAGAAATCACTTCCCGGTAGGTTACCCATCCTGAAATTGCTCCAGTTCAAGTACGCTTAACTCTGGAGTTCTCTCGGGATGGTCAACCGAAAAGATAAGTGCactttggtgatatcgGTAGCCAAATCAATTCTTTTAAGCTCTCCTCATGCACCACCAAATCTCCATATTCCGGGGTATTACA

Boechera stricta (v1.2)

ID:

Scaffold10040_LTR-Cassandra_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

367

Start:

2437398  

End:

2437764

Strand:

-

>Scaffold10040_LTR-Cassandra_6

TGTAACACTCCGATCACCATTATTCATGGGTTCCACTACCTATCTCGGTCCGTGGGCTCACTTTTGTCCGATGATTAGTGCGCTATTTCCAATACTTGAAAATTTTTATTTACCGACTCTACAAATTACCATGTGATCTTTTTTCATGTTTTGTCATCACTTACATGATACCAAGAATCACTTatcggtagaccTAGATCACCCATCTTGAAATTGTTTCAGCTTAAATACGCTTAACTCTGAAGTCTGATAAAATTAATGTTTGAATGAAAAGACAAGTGCACTTTGGTAAAATAGATAGTCAAATCAATTTTTAAAATTAAAGCCTCTCGACATGCACCACCATAGTTCTGAAATCGAGGTGTTA

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

255

Start:

308279  

End:

308533

Strand:

+

>Scaffold10058_LTR-Cassandra_7

TTTAAAAGAATTGATTTGGCTACCAAAGTGCACTTATCTTTTCGGTTaaccatcccgAGAGAACTCCAGAGTTAAGCGTGCTTATGCTGAAGCAATTTAAGGATGAGTGACCTATCGGGAAGGATTTCCGGTACCATGTGAATGAGGACAAAACACGGGAAAAGATCACGTGGTGATTTGTAGGGtcggtaaacaAGTCTTTAAAGCCTCCAGAAGTAACGAACCGGCCGTCGGATGAGCATGGGGCCCATGGGC

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

276

Start:

312402  

End:

312677

Strand:

+

>Scaffold10058_LTR-Cassandra_8

CATGAGGAGAGCTTAAAAGAATTGATTTAGCTACCTATGTCACCAAAGTGCACTTATCttttcggttaACCATCCCGAGAGAACTCCAGAGTTAAGTTTGCTTGTGCTGGAGCAATTTAAGGATGGGTGACATATCAAGAAGTGATTTCCGGTACCATGTGAATGAGGACAAAATACGGGAAAAGATCACGTGGTGATTTGTAGAGTCGGTAAACAAGTCTTTAAAGCCTTCAGAAGTAACAAATCGGCCGTCGGATGAGCGTGGGGCCCATGGGC

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

92

Start:

312654  

End:

312745

Strand:

+

>Scaffold10058_LTR-Cassandra_9

CGGATGAGCGTGGGGCCCATGGGCGGTTTGGGCGTTACAAGGTGACAGTCTTGGTGCGCAACGAGGACATTGCGATCTGTTAATGGGGGTGA

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

343

Start:

312747  

End:

313089

Strand:

+

>Scaffold10058_LTR-Cassandra_10

TATAACACCCCAGAATCTGAAGATTTGGTGGTGCATGAGGAGAGCTTAAAAGAATTGATttgactacctaTGTCACCAAAGTGCACTTATCTTTTCGGTTAACCATACCGAGAGGACTCCAAAGTTAATCTTGCTTGAGCTGGAGCAATTTAAGGATGGGTGACTTATCGGAAAGTGATTTTCGGTACCGTGTAAGTGAGGACAAAACACAGGAAAAGATCACGTGGTGATTTCTAGGGTCGGTAAACAAGTCTTTAAAGCCTCCACAAGTAATGCACCGATCATCGGCCGAAGGTGGGGCCCACGGGCTGGGCCCTTGGACGGTGGCGGTCGGGGTTTTACA

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

105

Start:

313095  

End:

313199

Strand:

+

>Scaffold10058_LTR-Cassandra_11

GTATTAGAGCCGAACCCAGACAAACGTGGAGTCAAGAGAGGTCACGCTGTCGGGGGTGACGGTCTTGGTGCGAACGAAGACGTTGCGATCTATTAGTGGGGGTGA

Boechera stricta (v1.2)

ID:

Scaffold10058_LTR-Cassandra_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

308

Start:

313201  

End:

313508

Strand:

+

>Scaffold10058_LTR-Cassandra_12

TGTAACACCCCGGAATCTGAAAATTTGGTGGTGTATGAGGAGAGCTTAAAAGAATTGATTTGACTATCTATGTCACTAAAGTGCACTTAACGTTTTGGTTAACCATCCCGAGAGAACTCCAGAGTTAAGCGTGCTTAAGCTGGAGCAATTTAAGGATAGGTGACCTATCGGGAAGTGATTTTCGGTACCGTGTGAGTGAGGATAAAACACGGGAAAATATCATGTGGTGATTTGTAGGGTCGGTAAAcaagtctttaaAGCCTCCAGAAGTAACGAACCGACCGTCGATGAGCGTGGGGCCCATGGGC

Boechera stricta (v1.2)

ID:

Scaffold10199_LTR-Cassandra_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

112

Start:

682653  

End:

682764

Strand:

+

>Scaffold10199_LTR-Cassandra_13

TGGTATCAGAGCCGAACCTAGACGAGTGTGGAGACAAGTGGATGGTCTCACACCGTTAAGGGGTGACGGTCTAGCTGCGCAACAAGGACGTTGCGGTCTGTTAGTGGGGTGA

Boechera stricta (v1.2)

ID:

Scaffold10199_LTR-Cassandra_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

341

Start:

682766  

End:

683106

Strand:

+

>Scaffold10199_LTR-Cassandra_14

TGTAACAACCTAGGTTAGAAATATGGTGGTGCATGACGAGAGCTTAAAAGAATTGATTtggccacctatGTCACCAAAGTGCACTTATCTGTTCGGTCAAACACCCTGAGAGAATTCCAGAGTTAAGCGTGCTTGAGCTGGAGCAATTTCATGATGGGTGACCTACCGGAAAGTGATTTCTGGTACCGTGTGAGAGAGGACAAAACACTGGAAAAGATCACGTGGTGATTTGTAGggtcggtaaacAAGTCTTTAAAGCTTCCAGAAGTACTGCACCGACCATCGGCCAAGGGTGAGGCCCACGGGCTGGGCCCATAGACGGTGGCGGTCGGGGCGTTACA

Boechera stricta (v1.2)

ID:

Scaffold10273_LTR-Cassandra_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

277

Start:

2932318  

End:

2932594

Strand:

+

>Scaffold10273_LTR-Cassandra_15

TATAACACCCCAGGTTGGGAATATGGTGGTGCATGAGGAGAGCTTAAAAGAATTGATTTGACCATCTATGTCACCAAAATGCACTTATCTTTTCGGTCAAACACCCTGAAAGAACTTCAGAGTTAAGCGTGCTTGAGATGGAGCAATTTCAGAATGTGTGATCTACCAGAAAATGATTTCCGGTATCGTGTGAGTGAGGACAAAACACGGGGAATGATCACGTGGTGATTTGTAGGGTCTGTAAACAAGTTTTTAAAAGCCTCCAGAAGTAATGCAC

Boechera stricta (v1.2)

ID:

Scaffold1040_LTR-Cassandra_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

90

Start:

550813  

End:

550902

Strand:

-

>Scaffold1040_LTR-Cassandra_16

CGCAATGTCTTCATTGCAAACCAGACGTCACACTCGCCAATGTAAATCCAAATGACTCATCACTCATCTAGGCTCGGCTCAAATACCACT

Boechera stricta (v1.2)

ID:

Scaffold11797_LTR-Cassandra_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

329

Start:

8995  

End:

9323

Strand:

+

>Scaffold11797_LTR-Cassandra_17

TGCACGAAGAGAGCTTAAAAACAATGATTTGGCTACATATCTCACTAAAGTGCACTTATTTTTTCTCTTAAATATTTTGTTAGAACACCAAAGATAAGCGTGCTTGAGCTGTAGTAATTTCAGGATGGGTGACCTATTGGAAAGTGATTTCCGGTACCGTGTGAGTAAGAAAAAAACACATGGAAAGATCACGTAATAATTTGTAGGATCGGTAAACAAATCTTTAAAGTAAGCCTTTCGGAGTAGCGATCCAACTGTTGGATAAAGGTGGGGCCCATAGGCTGAGAGAGGATGTGGGCTCCATGGACGGTGGCGGTCGGAGAGTTACA

Boechera stricta (v1.2)

ID:

Scaffold11797_LTR-Cassandra_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

105

Start:

9488  

End:

9592

Strand:

+

>Scaffold11797_LTR-Cassandra_18

TTTTTAAAGCCTTCCGGAGTAGCGAACCGACTATCGGATGAAGGTGGGGCCCACGAGCTGAAAAAGGACGTAGATCCCACAAACGGTAGTGGTCGGGGCGTTACA

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

109

Start:

209505  

End:

209613

Strand:

+

>Scaffold12302_LTR-Cassandra_19

GGAATCAAAGCCGAATCCAGACGAGTGTAGAGTCAAGTGGACTCACACCGTCGGGAGGTGACAGTTTTGGTATGCAACGAGGACGTTGTGATTTGTAAGTGGGGTGAAT

Boechera stricta (v1.2)

ID:

Scaffold12302_LTR-Cassandra_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Cassandra

Length:

287

Start:

209613  

End:

209899

Strand:

+

>Scaffold12302_LTR-Cassandra_20

TGTAACACCTCAATTTATGAAAATATGGTGGTGCATGAGAAGAATTTTAAAGAATGTATCTGGCGACTTATGTCATCAAATTGCACTTATCTTTTAGGTCAAACATTCTGTCAGAACTCCAGAGTTAAGCGTGCTTGAGATAAAGCGATTTCAAGTATCATGTGGTTTTGGTCGGTAAACTAGTCTTTCAAATTTTCTCAGTATCGAGCCGACCATTGGACACAGATGGATCTACAGGCCGAGAGAGGACATGAGGGCCCATTAACAGTGGCAATCGGGGCATTTCA