ID Class Order Superfamily Length Start End Strand View
scaffold10081|size420_LTR_1 RetrotransposonsLTRLTR1521152+
scaffold10081|size420_LTR_2 RetrotransposonsLTRLTR239181419+
scaffold1011|size7176_LTR_3 RetrotransposonsLTRLTR317381697+
scaffold101|size326356_LTR_4 RetrotransposonsLTRLTR1321981919950-
scaffold101|size326356_LTR_5 RetrotransposonsLTRLTR1324892049051+
scaffold10210|size416_LTR_6 RetrotransposonsLTRLTR1091109+
scaffold102|size241018_LTR_7 RetrotransposonsLTRLTR13114341564+
scaffold102|size241018_LTR_8 RetrotransposonsLTRLTR10757715877+
scaffold102|size241018_LTR_9 RetrotransposonsLTRLTR397186176186572-
scaffold102|size241018_LTR_10 RetrotransposonsLTRLTR124206183206306-
scaffold10365|size412_LTR_11 RetrotransposonsLTRLTR139106244+
scaffold103|size234654_LTR_12 RetrotransposonsLTRLTR1594310443262+
scaffold103|size234654_LTR_13 RetrotransposonsLTRLTR3778993690312+
scaffold103|size234654_LTR_14 RetrotransposonsLTRLTR153179729179881-
scaffold10424|size411_LTR_15 RetrotransposonsLTRLTR127275401-
scaffold104|size233450_LTR_16 RetrotransposonsLTRLTR1405119621121025+
scaffold104|size233450_LTR_17 RetrotransposonsLTRLTR182193920194101+
scaffold1050|size6976_LTR_18 RetrotransposonsLTRLTR108731089+
scaffold1050|size6976_LTR_19 RetrotransposonsLTRLTR30519632267+
scaffold1050|size6976_LTR_20 RetrotransposonsLTRLTR13136503780+

< 1 2 3 4 5 > Total 71


Boechera retrofracta (v1.0)

ID:

scaffold10081|size420_LTR_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

152

Start:

1  

End:

152

Strand:

+

>scaffold10081|size420_LTR_1

TCTGAGAGAAGGTTAGAGATCATGCTGCAACAGGTTCTAGATGGACAAAGCAAAAATTCTCAGGAGATATCTGATCTTGCTTGGAAGTTTGAAGGTTTGAGCTGTGAGTTTCAGCGCGAAGTGAAGACCAGAGAGAATGCAGTTCAGTCCAG

Boechera retrofracta (v1.0)

ID:

scaffold10081|size420_LTR_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

239

Start:

181  

End:

419

Strand:

+

>scaffold10081|size420_LTR_2

GATCGATCGATCCAATCTTTAGCTCTAGGAAAGACACCTGCATCTGCGAGTCTTCCTCTATATATCCCAAAGGTTCCATACCCTTGTGCAGTTAAGCCTCCTCCATTTAGGCTTCTGCCAAAGCTTGCAGATCCAGGGAAGTTTGTGGTTCCTTGTTCTATTGATGGGGTTGCTTTTGAGGACTCTTTATGCGATTCAGGATCTACAGTGAATATCATGTCTGTGGATATCGCGCGAAG

Boechera retrofracta (v1.0)

ID:

scaffold1011|size7176_LTR_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

317

Start:

381  

End:

697

Strand:

+

>scaffold1011|size7176_LTR_3

GTTTGTTTCAGTAATCTAGAAAAGAAAAGAAAAAGAAGATAGAGCTGTAGAAGAAAACGAATTAGCTAGAGTGTTTCACCCTGTTAATCTGTTTTGCTTCTGTTTTGTGAACTGTTTTGTTGCATCTTGTTTGATCGATTAGAATTGAATTGAATCATCATATTAGGCTGTTGTTTGCATCATTAGAGACTGAATTTCGTGGCTGCTAGGTTGCTAAAGGAGAAGACGAAATTTGGAATTAGGGTTTTAGGAGAATTAAGTGCAGTTTCCTTTTTCTATTTCAGCTGCATTTCCTTTTTCTATTTTATCTGAATTTC

Boechera retrofracta (v1.0)

ID:

scaffold101|size326356_LTR_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

132

Start:

19819  

End:

19950

Strand:

-

>scaffold101|size326356_LTR_4

CTTTCCTGGTAGAAACCCCTCTTGTCTTTTCACAGCAGCTGCGGTCTGAGCAATCTGAGTTTCGAGCTTCTTCTGCGACAGATTCAACGCCTCAATCTTGCCATTCAGGTCGATATACAAGTTATCCAGCTT

Boechera retrofracta (v1.0)

ID:

scaffold101|size326356_LTR_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

132

Start:

48920  

End:

49051

Strand:

+

>scaffold101|size326356_LTR_5

AAGCTGGATAACTTGTATATCGACCTGAATGGCAAGATTGAGGCGTTGAATCTGTCGCAGAAGAAGCTCGAAACTCAGATTGCTCAGACCGCAGCTGCTGTGAAAAGACAAGAGGGGTTTCTACCAGGAAAG

Boechera retrofracta (v1.0)

ID:

scaffold10210|size416_LTR_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

109

Start:

1  

End:

109

Strand:

+

>scaffold10210|size416_LTR_6

CTAACCGTCATTAAAGTCAGGCTCGTGACATTAAACAAGCGCTCAGTGGGAGGCAACCCACTGGTGATTCTGTACATACTAGTTTTGGTTTTTGGTTTTTGCTAATTTT

Boechera retrofracta (v1.0)

ID:

scaffold102|size241018_LTR_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

131

Start:

1434  

End:

1564

Strand:

+

>scaffold102|size241018_LTR_7

AAGCTGGACAACCTGTATACGGACCTGAATGGCAAGATTGAGGCATTGAATCTGTCGCAAAAAAGCTCGAGACTCAAATTGCTCAGACCGCAGCTGCTGTGAGAAGACAAGAAGGGTTTCTTCCAGGAAAG

Boechera retrofracta (v1.0)

ID:

scaffold102|size241018_LTR_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

107

Start:

5771  

End:

5877

Strand:

+

>scaffold102|size241018_LTR_8

GCCTAACCGTCATTAAAGTCAGGCTCGTGACATTAAACAAGCGCTTAGTGGGAGGCAACCCACTGGTAAGTCTGTATATACTAATTTTTGTTTTTGTTTTCTTTTGT

Boechera retrofracta (v1.0)

ID:

scaffold102|size241018_LTR_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

397

Start:

186176  

End:

186572

Strand:

-

>scaffold102|size241018_LTR_9

TTTGGTTTATGGACGTTGTAGGGTAGTTGCTACTTGTTTTGTGGGGTTACAGCAGTTCCTGTGGTGAATATTTTTTACACATCACCCACTTTAGTTCCTCCCATGTTCTGATCTTTGTGTCATTGTAATGCCATTGATTATACTCCTCACAATCCCACCACTTTAAGGCTTCTCCCTCGAATTGCCCAAGAGTAATTGAAAGCTTTTCTTCATGGGGCGTTTTGTAGTACCAAAAGTACTCATGCATGTTAATTTCCCATTGTAGATACCCTATACCATTAAACAAGAAAAATTCAGGCCCAAAACGTTCATAACCATCATCATAAATTAACATAATTCAAGATTTATAGGTAGCTCGGAATGTGGCTCGTGGTATTCGACTCCATAGGGTTCTTGG

Boechera retrofracta (v1.0)

ID:

scaffold102|size241018_LTR_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

124

Start:

206183  

End:

206306

Strand:

-

>scaffold102|size241018_LTR_10

AATCACTCTTATGTTCGGACTCTTGTTCTCCCCAATCAATTTCCAAGGTGTTGAGCTCAATCTCAGCTTCTTCCCCATAATCCATAGCTCTAGATTGTAGTTATACCTTGCAAAACAAAAAAGA

Boechera retrofracta (v1.0)

ID:

scaffold10365|size412_LTR_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

139

Start:

106  

End:

244

Strand:

+

>scaffold10365|size412_LTR_11

AAGCTGGATAACTTGTATATCGACCTGAATGGCAAGATTGAGGCGTTGAATCTGTCGCAGAAGAAGCTCGAAACTCAGATTGCTCAGACCGCAATCTGAGCAATCTGAGAAAAGACAAGAGGGGTTTCTACCAGGAAAG

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

159

Start:

43104  

End:

43262

Strand:

+

>scaffold103|size234654_LTR_12

GATCGATCGATCAAGCGGAGGATCGATCGATCTGTTTCGCCGTAAAGTTTTTGGATCGACCCAGGTGTTTCGGTTCGATCGGTCAAGATTCTGATCGATCGATCCAACATATGGATCGATCGATCATGTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAG

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

377

Start:

89936  

End:

90312

Strand:

+

>scaffold103|size234654_LTR_13

TTTTCAAACCTCTTTCTCTAACTTAGTTTTCTGTTTTGCTTGAGGGCAAGCAAAAGGCTAAGTCTGGGGGAGTGATATATCATGGATTTTACCCGTTTTTAGCCATGATATAAGTCGTTTTATCGAGTCTTTCTAGTGCTTTTTCTATCATTTTAGAGTCTTTTCAGGTTTTAGCACGTTTGGGACGAAATTGGAGATTTTGGAGACATTTGGAGCTTTTTGGCAATTCGTTGGAAGACTTTCCACCGTTAGATCGAGCTGAAATTTTGACACAAGATAGATCTTTGATTTAGCTTTCGTTTGCAAGTGGTTTGAAGGAAATCCAACGGTGCGATCAAAAGTTATGCCAGTTGTCGTGAAGACAGTCTAGTCTGGCG

Boechera retrofracta (v1.0)

ID:

scaffold103|size234654_LTR_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

153

Start:

179729  

End:

179881

Strand:

-

>scaffold103|size234654_LTR_14

GTGGGCTCTTGGATCTTCAGTCTTTCCTGGTAGAAACCCCTCTTGTCTTTTCACAGCAGCTGCGGTCTGAGCAATCTGAGTTTCGAGCTTCTTCTGCGACAGATTCAACGCCTCAATCTTGCCATTCAGGTCGATATACAAGTTATCCAGCTT

Boechera retrofracta (v1.0)

ID:

scaffold10424|size411_LTR_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

127

Start:

275  

End:

401

Strand:

-

>scaffold10424|size411_LTR_15

CTGGTAGAAATCCCTCTTGTCTTTTCACAGCAGCTGCGGTCTGAGCAATCTGAGTTTCGAGCTTCTTCTGCGACAGATTCAACGCCTCAATCTTGCCATTCAGGTCGATATACAAGTTATCCAGCTT

Boechera retrofracta (v1.0)

ID:

scaffold104|size233450_LTR_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1405

Start:

119621  

End:

121025

Strand:

+

>scaffold104|size233450_LTR_16

TGATATATCTCGGTTTTCACGGTTTTTAACCATTTTTTTTAGTGTGTTTTTGAGTCTTTTATACTTATTTAGAGTCTTTTAGTCCTTTATAAAGTCTTTACAGGTTTTAGGTTGATTTGGAAGAGAATTTGGAATTTTGGAGCGAAAATGCAGTTTTGAAAATGCAGGACAGTGCAGAAGGGTCAGAAGTTTGCCATTCATTGAATATCTTCCCGATGTCGGATTGCAGTTATTTTTTGGCACAAGATATCTCTTTGAGTTAGCTTTCATTTGGGACTGGTTTCATGTCATTATCATCAGTGGTTCAAAAGTTATGCCCGTTTTACTGAAGACAGGTCGATCTGGCCAGCAGCTGAAGCAGATGCAGAGTGAGACCTCCGATCGATCGATCCACTATTAGATCGATCGATCCAATTTTGCGTGACATTTTAAGATCGACCACGGCACTCAGGATCGATCGATCCAACCTTGATCGATCGATCCTACTCAGATCGACCGATCCTGTCCAAAAACGAGAAAATAGAAGAATTTCCAGATATGCCCCAGATTGTTCTTATCTCTTTAGGTTTCGACCAAAACCTGTTTAGAACTATAAATAAGGGTTTCTAAGCCATTGTTTAGGCTATGCTTTCATCTCCATTCCAACTTTTCATACCTCATCTCTTAGAGAAGATTTCTTATACTCTTTTCTTATTTAAATTCAATTGTTATGGAGTTTTATTCATTCATTGCTTGTTCATCTCTTGTCATGTCTGAGTAGTCTCTTAGTTAGGTTTTAGGGTTTCAAAAGATTTCATGAATCACTGAATTAGACATAGATAGGGATTTATCATTATTAATCTTCTCCTATTGTTGTTCTCATAGCTTAGACTAAATTGACCACTTAGTCTCTGATTTAGGGTTTAACATATTCTCCAAAAGCTTATAGGTTGCTTGATAGAACATTAGGAGAGCGAATTGTCCTTAACCAACGAAAGCTGATGTTAAGGCAATTCGTGAACAGATTGAACCTGCCTGTTGAATGCTTGTCTATAATTTTGAGTTCAAACGACAGTTTAGAATCTTAGGTTGCTAGACAAAGTAATTGGTGTCACGACAGTGGATTGATTATACAATTATGTTTGAGTTCGAGATTGGTGTTTAATTCATTCCCTGAATAATTGTCTGATTCTTGATTTGTGATTTCCTGCGAATTTCCCTGAAGCCTAGCGCTTTTTAATTCATTGTTTACAACTGTTAGTCTTATTTCTTGTTCACCATACAACAACCCTTTTTTATTCTGTCTTAGCTTCCTAATCAATCTCTATAGCCTGTAGTGTAACCATTGATCCTCGTGGATTCGATCCCTAAGTACTGCAACGTACTAGGATATTTGCATAGACCCGAGTGAAAACTCCAACTATCA

Boechera retrofracta (v1.0)

ID:

scaffold104|size233450_LTR_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

182

Start:

193920  

End:

194101

Strand:

+

>scaffold104|size233450_LTR_17

TTGCCTTTGAAATTTACGATTTGAGTTTAGTCTTAAATTTTATTTTTATTTTTAAATTAGTTTATTTTTTCATTATTTCTTGTGTGTTTTAGGTGTATGTAGAGAAGAAGACAAGGCTCTAATCTGCTTGCATTCGACAACTACGAGTCAGCGCGACTTGAATGAGAAAACAGAAAGTTGAG

Boechera retrofracta (v1.0)

ID:

scaffold1050|size6976_LTR_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

1087

Start:

3  

End:

1089

Strand:

+

>scaffold1050|size6976_LTR_18

TCTAATGGAATGCCTAGCGAGTTTCTCAAATGCAAGTTGTTTCCTTTTTCACTTGCGGACAAAGCTTCACGTTGGTTGAAATCACTGCCATCAGGTTCATTGACAACATGGGCTGAGGTTAGAGCAGCATTTTTGGATCACTTCTACACCAAATCGAAAACTGCCGCTTTGAGGAACAAAATATCTTCATTCCAACAACATTCTGGAGAACCTTTCTGTGAAGCTTGGGAAAGGCTGAAAGAATACAGAAGAGAGTGTCCTCACCACGGTTTCAAGGATGAGTAGATCCTAGGTATCTTCTATGATGGTGTTGAGTGGGATTATAGGAATGCGCTGAACGCGGCCAGCAATGGCGATTTTATGACCAAGACTAAGGAAGGCCCTTTCGCGCTAATTGAGAACTTAGCTTCGAGTTCCAGCAACAAGTCTCTTGAGTATGATAGGTCCAAGAAAGCGAACAGCATGGAGACACAGAAGATTGATGAGTTGGCTGCGAAAGTGAGTCTGTTGATGAAGGCAAATCAGAGGGGTGTTCAGCTTTGTGAAGGTGGTACAGAGAATTGGGAAAACACTGAGGAGCTGCAAGAAGTGAGTTATGTTAATGGACAGGGTTTCGTGCAGAACAGGGGTTTTAACCAGAACTACAGAAATCATCCTAATCTATCCTACAGGAGCACAAACGTCGAAAATCCTCAGGAACAAGTCTACCCACAGCAAACAGTTGCTTCAGGCCAACAGTTTCAGAAAAAACGTTCGTGCAAAATTCGGACGTCACAGGTAATTCTCAGGGGTTTACAGGACAGACGAGCGTGCAAAATCCGGGTCAGAATCAGTTTCAGAGTGGTTTTCAGCAGAGTCAGCCATTCAGCAACTTTCAGACACCTGCAAACTCAGCCAGCAGTACTCAAGACAAGCTCGAAGCTCTTATGCAGCAACTTCTACTCCAGCAACAAAAATCCTCTACTGAGATCAACACAAAAGTGGACAACATGTATAACGATCTCAACGACAAATATGAAGCTGTTGCAACTCACTTGAAGCTGCTTGATACTCAGGTTGCTCAGACCGCTGAGACAGTTAAGAGACA

Boechera retrofracta (v1.0)

ID:

scaffold1050|size6976_LTR_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

305

Start:

1963  

End:

2267

Strand:

+

>scaffold1050|size6976_LTR_19

ATTGAGTACAAGGTGAAGAGCAAAGGTATGTCTAAACCTTTCTCTCAAGTGAGGGCGATAATCACACCAGAACTCAAGGCTAAGGGCCAAGCGGCAATTGACGAGATGATGAGAAAGGTCCTTTGTCTAAGACCACACCCATCCCACCCTGTTCCTCCTGCGGATCCACCACACTGTGCCTAAAAGGCACTCAAGTCGAGCTAAAGACTTAAAACAAGCGCTTTGTGGGAGGCAACCCACAGGTATGTGTTCATATTTCTATTACATCTCTTTGTTTTCTGATGTTTTCATTTTCTAGGTTTCAG

Boechera retrofracta (v1.0)

ID:

scaffold1050|size6976_LTR_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR

Length:

131

Start:

3650  

End:

3780

Strand:

+

>scaffold1050|size6976_LTR_20

ATCCTATATTAACTAACCCTTTTTGAGTCTTTTTGTGTCTTTCGAGTCGTTTTTGAGCCTTGTCAGGTTAGAATGAAGTCTTGGAGCATGGATTTGATGGACTGGAGCTAATTGAGTTTCTGGAGCAAAAA