ID Class Order Superfamily Length Start End Strand View
scaffold38|size1256534_LTR-Pao_1 RetrotransposonsLTRLTR-Pao1274041740543-
scaffold12|size4842942_LTR-Pao_2 RetrotransposonsLTRLTR-Pao12433275483327671-
scaffold14|size2922549_LTR-Pao_3 RetrotransposonsLTRLTR-Pao140330508330647-
scaffold14|size2922549_LTR-Pao_4 RetrotransposonsLTRLTR-Pao140334637334776-
scaffold14|size2922549_LTR-Pao_5 RetrotransposonsLTRLTR-Pao8428248912824974+
scaffold33|size1474841_LTR-Pao_6 RetrotransposonsLTRLTR-Pao436295454295889-
scaffold33|size1474841_LTR-Pao_7 RetrotransposonsLTRLTR-Pao418299564299981-
scaffold33|size1474841_LTR-Pao_8 RetrotransposonsLTRLTR-Pao417300724301140-
scaffold33|size1474841_LTR-Pao_9 RetrotransposonsLTRLTR-Pao121301108301228-
scaffold33|size1474841_LTR-Pao_10 RetrotransposonsLTRLTR-Pao106301204301309-
scaffold33|size1474841_LTR-Pao_11 RetrotransposonsLTRLTR-Pao102302335302436-
scaffold33|size1474841_LTR-Pao_12 RetrotransposonsLTRLTR-Pao105323870323974-
scaffold33|size1474841_LTR-Pao_13 RetrotransposonsLTRLTR-Pao376325662326037-
scaffold33|size1474841_LTR-Pao_14 RetrotransposonsLTRLTR-Pao94326605326698-
scaffold33|size1474841_LTR-Pao_15 RetrotransposonsLTRLTR-Pao116327901328016-
scaffold33|size1474841_LTR-Pao_16 RetrotransposonsLTRLTR-Pao396328030328425-
scaffold33|size1474841_LTR-Pao_17 RetrotransposonsLTRLTR-Pao125328894329018-
scaffold33|size1474841_LTR-Pao_18 RetrotransposonsLTRLTR-Pao405329934330338-
scaffold33|size1474841_LTR-Pao_19 RetrotransposonsLTRLTR-Pao87330323330409-
scaffold33|size1474841_LTR-Pao_20 RetrotransposonsLTRLTR-Pao491330641331131-

< 1 2 3 4 > Total 4


Boechera retrofracta (v1.0)

ID:

scaffold38|size1256534_LTR-Pao_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

127

Start:

40417  

End:

40543

Strand:

-

>scaffold38|size1256534_LTR-Pao_1

TCCGATGCAACTCCAACAGCAACGGACTCTAATGCAACTCCAACAGCAACGGACTCTAATGCAACTCCAACAGCAACTGACTCTAATGCAACTCCAACAGCAACGGACTCTAATGCAACTCCAACAG

Boechera retrofracta (v1.0)

ID:

scaffold12|size4842942_LTR-Pao_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

124

Start:

3327548  

End:

3327671

Strand:

-

>scaffold12|size4842942_LTR-Pao_2

AACTCTTGTCTCTTTCTCTCCATCTCTCTTAACCCTAATCAGAACAACGATCAAGTACTTCAACAACGATAAGCAACAACAATCAAGTGCTTCAATCTCCATTACCGTCAAACTCATTCGGAGA

Boechera retrofracta (v1.0)

ID:

scaffold14|size2922549_LTR-Pao_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

140

Start:

330508  

End:

330647

Strand:

-

>scaffold14|size2922549_LTR-Pao_3

TGTAGAAAGGAGTCTTATATATACGGAGAGGTTGTACAAGAATATATACAAGCTAACGAGTACTCTAGGTTTAGGTAAATACAAAAGATTCCTTATATAAATGATTATGTATTATTGTCTTGATTTGAGTGTCCTTAACA

Boechera retrofracta (v1.0)

ID:

scaffold14|size2922549_LTR-Pao_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

140

Start:

334637  

End:

334776

Strand:

-

>scaffold14|size2922549_LTR-Pao_4

TGTAGAAAAGAGTCTTATATATACAGAGAGGTTGTACAAGAATATATACAAGCTAACGAATACTCTAGGTTTAGGTAAATACAGAAGATTCCTTATATGAATGATTATGTATTATTGTCTTGATTTGAGTATCCTTAACA

Boechera retrofracta (v1.0)

ID:

scaffold14|size2922549_LTR-Pao_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

84

Start:

2824891  

End:

2824974

Strand:

+

>scaffold14|size2922549_LTR-Pao_5

ACCGTAAATGGTCTCTCCAATTAATTGTGTTTGACGGTACTTGAGATTGCTCGGTTTGATAAAGCACTTGATTGTTTTTGCCCT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

436

Start:

295454  

End:

295889

Strand:

-

>scaffold33|size1474841_LTR-Pao_6

AAGAAGAATCCATGGAACTAGGCCATTAGTTAACGCATTATGAGGAAACTTTCGTTGCAAAAAGTCCCAAGTTGACATTTCTATTCACTCTTCATCAGCCTCCATTGATTCACATATGGATGTGTTCGCCGAGACTCAAAGAGGCTCACCATTCTCCATTGAAGTGGGTTACTTCGATACAGTGTTAGAGATCAAAGAGAAGATCGAGAAGTATCAACGTATCCCTGTTTATAAACAAACCCTTTTCTTCCAAGGCAATGTTCTTCAAGATCATCTTGATGTCGAACAATGCTAGATCCTCAACAACTCTCGTCTCCAACTCTTCATCTCTTCTCCTGGTAACAACGACCAAATGCGCAATCAGAACCGCAACAATCAAGTGTTCAAAACGGAGCAATATCCACCATCAAACTCAACAGAACAAATCATTAATGGT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

418

Start:

299564  

End:

299981

Strand:

-

>scaffold33|size1474841_LTR-Pao_7

CATCACTTTCTCTCTCTCTTTTCTTCACTTCACCGGTCTCCATTGATCTTGAAACACACCATTGATACAATTATGAAGGTGGTCGTCGATACTGAAAGTGGCTCATCGTTCTCCATTGTTGTTGATTACTAGGATACAGTGTTAAAGATTAAACAGAAGAGCGAGAAGTCTCTGAGATATCCCTGTTTTCAAACAAACCCTTTTTTTCCAAGGCAAGGTTCTTCAAGACCATCTTCATTACTTTGTATGCCGGTTCCTCCACAACTCTCGTCTCTTTCCCTTCTTCTCTCCTGACGATAACACTAATCAGAACAACAACGATCAAGTGCCTCAAACCGAGCAATATCCACCAGCACCATCAAATCCAATTCATGAGTTCTTTGGGATTCAAGAATCGCCGGAGGGCAGAAACAATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

417

Start:

300724  

End:

301140

Strand:

-

>scaffold33|size1474841_LTR-Pao_8

TCACTTTCTCTCTCTATTCTTCACCAGTCTCCATTGATCTTGAAACAACATTGGTACAATTATGAAGGTGGTCGTCGATACTCAAAGTGGCTCATCGTTCTTCATTGATGTTGAATTCTGGGATACGGCTTTAGAGATTAAACAGAAGATCGAGAAGTCTCAAGGTATCCCTCTTTTCAAACAAACCCTTTTCTTCCAAGGCAAGGTTCTTCAAGATCATCTTCTTTACTTTGAATTCCAAGACTCTCGTCTCCACCTCTCCATCTCTCCTGACGATAACCCTAATCAGAAAAACAATGATCACATGCCTCAAACCGAGCAATCTCCATCAGCACCATCAAATCCAAGTCATGAGTTCGTTAACATTCAAGATTGGCCTGTGATGAGCTACAACGATCAAGTGCCTCAAACCGAGGA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

121

Start:

301108  

End:

301228

Strand:

-

>scaffold33|size1474841_LTR-Pao_9

GAGCTACAACGATCAAGTGCCTCAAACCGAGGAATCTCCATCAACACCATCAAATCCAATTCATGAGTTCGTTAACAATCAAGATTTGCCTGTGATGAGCAACAACGATCAAGTGCCTGAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

106

Start:

301204  

End:

301309

Strand:

-

>scaffold33|size1474841_LTR-Pao_10

GAGCAACAACGATCAAGTGCCTGAAACCGAGGAATCTCCAATGACGTTAGAATCAAAGAAAGAGTTCTTTGGGATTCAAGATTCGCCGGAGGGCAGAAACAATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

102

Start:

302335  

End:

302436

Strand:

-

>scaffold33|size1474841_LTR-Pao_11

AGAGGTTTCAGTTAAGTCTGCTTCAAGAAGGCTATTTCTTTATATATAGACAGAGAATGTAATGGATGATGACCGGTCTTTCCGGTGACAATTGAGATTTTC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

105

Start:

323870  

End:

323974

Strand:

-

>scaffold33|size1474841_LTR-Pao_12

TTTTTTATATATAAACAAGATGTAATGAATGATGACCGGTCTTTCCTGTGACAATTGAGATTTTCAACGGAAGTGTTTCCGGTGGCTCTTAATACCATTAATTTT

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

376

Start:

325662  

End:

326037

Strand:

-

>scaffold33|size1474841_LTR-Pao_13

CGGAAGCAGAAGAAACAGGAATCAAGTGGTTCAAACCGAGCAATCTTCACCGTCAGACTCAGTCAAAGAGATCCCTATAATTTTAGATTCGCCTTTTAAAAAGAAGATCAAGACCATCCCGATGAATATGACAGTAATGGTGCAGCAATTTAAAAAGACCAGGAGGATTCCATTGGAGGTTAACGCACATGATAACGTTGAAGAACTGAGGAAAGAGGTGGTTAAGATGCAAGAGAGGGGTGAGTTAAATCTGCCTGAAAGGTATTTCTTTATACACAAACAGGCTCTAATATTAGACGAAGATCTGTCATTCTGGAGGAATGGTGTTGCTCACGGTGATACGATTGGGATTTTCCCCGGATGTGTTACCAATGAC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

94

Start:

326605  

End:

326698

Strand:

-

>scaffold33|size1474841_LTR-Pao_14

AAGAAGAATCCATGGAAATAGAGCATTAGTTAACGCATCATGAGGAAACTTTCGTTGCAAAAAAGTCCCAAGTAGACATCTCTATTCACTCTTC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

116

Start:

327901  

End:

328016

Strand:

-

>scaffold33|size1474841_LTR-Pao_15

CAAACAGAAGATCGAGAAGTCTCACCGTATCCTGTTTCCAAACAAACCCTTTTCTTCGACAACATGGTTCTTCAAGACCATCTTGATATCGAACAATGCCAGATCGTCCAAGATTC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

396

Start:

328030  

End:

328425

Strand:

-

>scaffold33|size1474841_LTR-Pao_16

CAAACCGAGCAATCTCCATCGTCAAACTCAGTCGAAGAGATGATCACTAACATTCATGGTTTGTCTGTGAAGGAAAGGACCCGGAAGAAGAGGATGGTCGTATACGTTTTGCCATATTTTCGGTGAGAGTAAAGCTGCCAAGGAGATTCCGGTGGCTGTGAATGTGAAGATGAACGATAACGTCAAAGAACTGAGGAACGACTTGCTTAAGATTAAAGAGAGGGGTGAGTTAAATCTGCCTCAAGAAGGGTATTTTCTTATACACAAAAACAGAGTATTGAACGAGAATCAGTCATTCTGGGTGGTTGGTGTTGATCACGACGATAGAATTGAGATCCGTCCTGAACATCTTACTCGTGGCTCTTTTAACCTTGACTCTTAAGTCACAATTCTTTG

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

125

Start:

328894  

End:

329018

Strand:

-

>scaffold33|size1474841_LTR-Pao_17

ACGATAACACTAATCAGAACAACAACGATCAAGTGCCTCAAACCGAGCAATATCCACCAGCACCATCAAATCCAATTCATGAGTTCTTTGGGATTCAAGAATCGCCGGAGGGCAGAAACAATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

405

Start:

329934  

End:

330338

Strand:

-

>scaffold33|size1474841_LTR-Pao_18

CTTTCTCTTTCTCTATTCTTCACCAGTCTCCATTGATCTTGAAACAACATTGGTACAATTATGAAGGTGGTCGTCGATACTCAAAGTGGCTCATCGTTCTCCATTGATGTTGAATTATGGGATACAGTTTTAGAGATTAAACAGAAGATCGAGAAGTCTCAAGGTATCCCTCTTTTCAAACAAACCCTTTTCTTCCAAGGCAAGGTTCTTCAAGATCATCTTCTTTACTTTGAATTCCAAGACTCTCGTCTCCACCTCTCCATCTCTCCTGAAGATAACACTAATCAGAACAACAACGATCAAGTGCCTCATCAAACCCAGGAATCTCCATCAGCACCAACAAATCCAATTCATGACGAGTTTGTTAACAATCAAGATTTGCCTGTGATGAGCAACAACGATCAA

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

87

Start:

330323  

End:

330409

Strand:

-

>scaffold33|size1474841_LTR-Pao_19

GAGCAACAACGATCAAGTACTTCAAACGGAGGAATCTCCATTGACGGTAGAATCATGGAAAGAGTTCCTTGGGGTTCAAGATTCGCC

Boechera retrofracta (v1.0)

ID:

scaffold33|size1474841_LTR-Pao_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Pao

Length:

491

Start:

330641  

End:

331131

Strand:

-

>scaffold33|size1474841_LTR-Pao_20

AAGCAGAAGAAACAAGAATCAAGTGGTTCAGACCGAGCAATCTTCACCGTCAGACTCAGTCAGAGACCCCTAGAATTTTAGATTCGCCTGTTAAAAAGAAGATCAAGACCAGCCGGATGAATATGACAATAATGGTGCAACAATTTAAAGAGACCCGGAGGATTCCATATGGAGGTTAACGCACTTGATAACGTTGAAGAACTGAGGAAAGAGGTGGTTAAGATGCAAGAGAGGGGTAAGTTAAATCTGCCTGAAAGGTATTTCTTTATACACAAACAGGCTCTAATATTAGTCGAAGATCAGTCATTTTGGATGAACGGTGTTGCTCACGGTGATACGATTGAGATTTTCCCCAGATATGTTACCAGTTATGACCAATCCCGGCGGCTCCACCATCTCAAGTGGATATATTAATCGAGACTCTGTGCAGTCTCCTCTTTTCTTATAGATTTTGTTTTAGTCTTTCTTCAAGTTTTCTTAGTGGCTTTTTT