ID Class Order Superfamily Length Start End Strand View
scaffold10|size7684569_LTR-Ngaro_1 RetrotransposonsLTRLTR-Ngaro237875558875794+
scaffold11|size3486627_LTR-Ngaro_2 RetrotransposonsLTRLTR-Ngaro10310324381032540-
scaffold11|size3486627_LTR-Ngaro_3 RetrotransposonsLTRLTR-Ngaro14610342511034396-
scaffold12|size4842942_LTR-Ngaro_4 RetrotransposonsLTRLTR-Ngaro33534313003431634+
scaffold12|size4842942_LTR-Ngaro_5 RetrotransposonsLTRLTR-Ngaro14439125633912706+
scaffold12|size4842942_LTR-Ngaro_6 RetrotransposonsLTRLTR-Ngaro17039998434000012-
scaffold13|size3762591_LTR-Ngaro_7 RetrotransposonsLTRLTR-Ngaro8932987963298884-
scaffold15|size2678857_LTR-Ngaro_8 RetrotransposonsLTRLTR-Ngaro11310753361075448-
scaffold16|size2371679_LTR-Ngaro_9 RetrotransposonsLTRLTR-Ngaro90153594153683-
scaffold1818|size1722_LTR-Ngaro_10 RetrotransposonsLTRLTR-Ngaro8511261210-
scaffold18|size2296484_LTR-Ngaro_11 RetrotransposonsLTRLTR-Ngaro197889768889964-
scaffold19|size3101341_LTR-Ngaro_12 RetrotransposonsLTRLTR-Ngaro138402673402810-
scaffold1|size8101256_LTR-Ngaro_13 RetrotransposonsLTRLTR-Ngaro18855087605508947-
scaffold23|size1898914_LTR-Ngaro_14 RetrotransposonsLTRLTR-Ngaro19116705101670700+
scaffold248|size26062_LTR-Ngaro_15 RetrotransposonsLTRLTR-Ngaro821870818789-
scaffold27|size3076990_LTR-Ngaro_16 RetrotransposonsLTRLTR-Ngaro10526622572662361+
scaffold2|size7652841_LTR-Ngaro_17 RetrotransposonsLTRLTR-Ngaro17648826534882828+
scaffold30636|size387_LTR-Ngaro_18 RetrotransposonsLTRLTR-Ngaro82168249+
scaffold39|size1397634_LTR-Ngaro_19 RetrotransposonsLTRLTR-Ngaro100135509135608+
scaffold3|size6152117_LTR-Ngaro_20 RetrotransposonsLTRLTR-Ngaro11536543203654434-

< 1 2 > Total 2


Boechera retrofracta (v1.0)

ID:

scaffold10|size7684569_LTR-Ngaro_1

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

237

Start:

875558  

End:

875794

Strand:

+

>scaffold10|size7684569_LTR-Ngaro_1

ACAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAAATACAAATGCAACAACTCTTGTTACAACAACGTGCACAACAGCAGCAACAGCAGCAGCAGCAACAACAACATCATCATCAGCAACAGCAGCAGCAACAACAACAACAACTTCAAAACCAACCACCTTCTCAACAGCAGCAGCAGCAGCAGCAGCCGGCGCCTCAACACCAACAGCAGCCAACATCACAGCAGCAGCCACA

Boechera retrofracta (v1.0)

ID:

scaffold11|size3486627_LTR-Ngaro_2

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

103

Start:

1032438  

End:

1032540

Strand:

-

>scaffold11|size3486627_LTR-Ngaro_2

GCTGTTGTTGATTAATCTGCATTTGCTGTTGTTGTTGCTGCATCTGCTGTTGTGGTTGCTGCTGTAGTTGTTGCTGCATCTGTTGTATTTGTTGCTGTTGCTG

Boechera retrofracta (v1.0)

ID:

scaffold11|size3486627_LTR-Ngaro_3

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

146

Start:

1034251  

End:

1034396

Strand:

-

>scaffold11|size3486627_LTR-Ngaro_3

TGTTGTTGTTGTTGCTGAAGAATCTGCTGCTGTTGTTGCGATAATTGTGGAATCGGAGATGAAGAGATTTGCTGCAAAATCTGTTGTTGTTGTTGTTGTTGAGGCAATTGCTGAATTTGATTTTGCTGTTGCTGAAGCTGTTGTTG

Boechera retrofracta (v1.0)

ID:

scaffold12|size4842942_LTR-Ngaro_4

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

335

Start:

3431300  

End:

3431634

Strand:

+

>scaffold12|size4842942_LTR-Ngaro_4

TCAGCAGCAGCAACAACAACAGCTCCAACAACAACAGCAGATCCAGCAGCAGCAGCAACAACAACACCACCAACAGCAACAGATGCCCCAACTCCAGCAACAACAACAACAGCACCAGCAGCAACAGATGCCACAACTCCAGCAACAACAACAACAGCACCAGCAGCAACAGATGCCACAACTCCAGCAGCAGCAGCAACAGATGCCACAACTCCAGCAGCAGCAGCAGCATCAATTGTCGCAGCTCCAACATCATCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCATCAGTTGACACAGCTTCAACACCATCATCAGCAGCAACAGCAGC

Boechera retrofracta (v1.0)

ID:

scaffold12|size4842942_LTR-Ngaro_5

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

144

Start:

3912563  

End:

3912706

Strand:

+

>scaffold12|size4842942_LTR-Ngaro_5

CAGTTGCAACAGCAGCAGAAGCTTCAGTTGCAACAGCAGCAGAAGATTCAGTTGCAACAGCAGCAGAAGATGCAGTTGCAACAGCATCAGCTGGAACAAGAGCATCAGTTACATCAGAAGCTCTTACAAGAGCAACAACAATCT

Boechera retrofracta (v1.0)

ID:

scaffold12|size4842942_LTR-Ngaro_6

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

170

Start:

3999843  

End:

4000012

Strand:

-

>scaffold12|size4842942_LTR-Ngaro_6

TGTTGAAAATGTAATTGTCGAGCATGGGACTGCTGTTGCTCCTGTAAGAGCTTCTGATGTAGCTGATGCTCTTGTTGCAGCTGATGCTGTTGCAACTGAATCTTCTGCTGTTGTTGCAACTGAATCTTCTGCTGCTGTTGCAACTGAATCTTCTGTTGTTGCTGCAACTG

Boechera retrofracta (v1.0)

ID:

scaffold13|size3762591_LTR-Ngaro_7

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

89

Start:

3298796  

End:

3298884

Strand:

-

>scaffold13|size3762591_LTR-Ngaro_7

GGGGAGTTTCACGTAACCATCATACATATATATACTTTTGCTTAATGTGTAAGTATACATTTGTATATATATATATCTACATATATATA

Boechera retrofracta (v1.0)

ID:

scaffold15|size2678857_LTR-Ngaro_8

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

113

Start:

1075336  

End:

1075448

Strand:

-

>scaffold15|size2678857_LTR-Ngaro_8

TGTTGCTGCTGTTTCTGCAAATGCTGCATCAGAAATAGCTGTTGTTGACGCTGTTGCAGTTGTTGTTGTTGTTGCATTTGAAGTAAGAGTTGCTGTTGTTGCAACTGCTGCTG

Boechera retrofracta (v1.0)

ID:

scaffold16|size2371679_LTR-Ngaro_9

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

90

Start:

153594  

End:

153683

Strand:

-

>scaffold16|size2371679_LTR-Ngaro_9

TAAATATATATGTATCTATGTAGGCATATACATAATATATATATATATATATTTATATGCATGTATGAATCTATGATAGGTTGTTAAGAC

Boechera retrofracta (v1.0)

ID:

scaffold1818|size1722_LTR-Ngaro_10

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

85

Start:

1126  

End:

1210

Strand:

-

>scaffold1818|size1722_LTR-Ngaro_10

GTTATTGTTGTTGTTGTTGTTGTTGCTGCTATTGTTGCTGCTGTTGTTGCTGCTGTTGTTGTTGTTTGTGTTGTTGTTGTTGTTG

Boechera retrofracta (v1.0)

ID:

scaffold18|size2296484_LTR-Ngaro_11

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

197

Start:

889768  

End:

889964

Strand:

-

>scaffold18|size2296484_LTR-Ngaro_11

GATTGTTGCTTCCTCCGCCATTGTTTCTGTTGTTGTTGTCATTGTTATTCCCATTGTTGTTATTGCCATTGTTGTTATTACCACTGTTGTTGTTGTCTTTGTTATTCCCATTGTTGTTGTTGTTGTTGTCATTGTTGTTATTACCATTGTTGTTGTCATTCTTGTTATTACCATTGTTGCCATCATTGTTATTGTTT

Boechera retrofracta (v1.0)

ID:

scaffold19|size3101341_LTR-Ngaro_12

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

138

Start:

402673  

End:

402810

Strand:

-

>scaffold19|size3101341_LTR-Ngaro_12

GCAGAGTCAACAGCATTGAGGGTGCCATTATCGGGAGCAGGAACAGTAGCAGTATCAGTAGCTGTAGCAGGAGCAGGAACAGGAGCAGTAACAGGGGCAGTGACAGGAGCAGTAACAGGGGCAGTGACAGGAGCATTG

Boechera retrofracta (v1.0)

ID:

scaffold1|size8101256_LTR-Ngaro_13

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

188

Start:

5508760  

End:

5508947

Strand:

-

>scaffold1|size8101256_LTR-Ngaro_13

TTGTTGTTGCAACTGTTGCTGTTGGTGCTGCTGCTGCAACTGTTGCTGTTGCTGCACTTGTTGCTGCTGCTGCAGCTGAACCCGTTGCAATGGTGGGAGGGACTGGAGATATTGTTGCTGTTGCCTCAGCTTTTGTTGATGAAGTAAAAGTTGGAACTGTGGATTTTGGCCTTGTTGTTGTTGCTGCT

Boechera retrofracta (v1.0)

ID:

scaffold23|size1898914_LTR-Ngaro_14

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

191

Start:

1670510  

End:

1670700

Strand:

+

>scaffold23|size1898914_LTR-Ngaro_14

AATATGAATGCACGAATGCATGTGTATAAATGCATGCATGGATGCATGCGTGTATGAATGCATGGATGCATGCGTGTATGAATGCATGGATGCATGCGTGTATGAATGCATGGATGCATGCGTGTATGAATGCATGGATATATGAATGCATAGATGCATGGATGCATGCATTTATGAATGCATGGATATAT

Boechera retrofracta (v1.0)

ID:

scaffold248|size26062_LTR-Ngaro_15

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

82

Start:

18708  

End:

18789

Strand:

-

>scaffold248|size26062_LTR-Ngaro_15

GCTGTTGTTGTTGCTGTTGTTGTTGCTGTTATAGCAACTGTTGCATCTGCTGTTGCAGATTCTGGAGTTGATCAGCTGTAGC

Boechera retrofracta (v1.0)

ID:

scaffold27|size3076990_LTR-Ngaro_16

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

105

Start:

2662257  

End:

2662361

Strand:

+

>scaffold27|size3076990_LTR-Ngaro_16

AAAAACAACAACAGCAGCTACAGAAGCAGCAGCAGCAGCAACAGCAGCTTCATGAACGGTTACAAGCTCACCATCTTCATCAGCAGCAGCAGCAGCAGCAGCTAC

Boechera retrofracta (v1.0)

ID:

scaffold2|size7652841_LTR-Ngaro_17

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

176

Start:

4882653  

End:

4882828

Strand:

+

>scaffold2|size7652841_LTR-Ngaro_17

CAGCCGCACAACAGTTCCAGCAGCTCCAGATCCAGTCACAGAAACAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAACAACATCAGCAGCAGCAATTTCAGTTTCAGCAGCAGCAACTGTATCACCTTCAGCAGCAGCAGCAGCGGCTTCAACAACAGGAACAACAAAGC

Boechera retrofracta (v1.0)

ID:

scaffold30636|size387_LTR-Ngaro_18

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

82

Start:

168  

End:

249

Strand:

+

>scaffold30636|size387_LTR-Ngaro_18

GTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGTCTTTCATTTTTGGGGGTAGGTCTTTTCAACTCTCTA

Boechera retrofracta (v1.0)

ID:

scaffold39|size1397634_LTR-Ngaro_19

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

100

Start:

135509  

End:

135608

Strand:

+

>scaffold39|size1397634_LTR-Ngaro_19

CAATTTCTATACTTATATATATATATATGTGCATATATATAGAGAGTTATAACTTATAAATACGTGCAAATGTGCATATATATATAGAGAGTTATAACTC

Boechera retrofracta (v1.0)

ID:

scaffold3|size6152117_LTR-Ngaro_20

Class:

Retrotransposons

Order:

LTR

Superfamily:

LTR-Ngaro

Length:

115

Start:

3654320  

End:

3654434

Strand:

-

>scaffold3|size6152117_LTR-Ngaro_20

GTTGTTGTTGTTGATGAAGTTGATTCTGATGTATAGCCTCCTGCTGCTGCTGTTGTTGTTGTTGTTGATGATGAAGCTGATTCTGATGTAGCATTTGCTGCTGTTGTTGCTCTTG