ID Class Order Superfamily Length Start End Strand View
A01_SINE-tRNA_1 RetrotransposonsSINESINE-tRNA212331840332051-
A01_SINE-tRNA_2 RetrotransposonsSINESINE-tRNA234495344495577+
A01_SINE-tRNA_3 RetrotransposonsSINESINE-tRNA260590481590740-
A01_SINE-tRNA_4 RetrotransposonsSINESINE-tRNA197624723624919+
A01_SINE-tRNA_5 RetrotransposonsSINESINE-tRNA86757434757519-
A01_SINE-tRNA_6 RetrotransposonsSINESINE-tRNA232879189879420+
A01_SINE-tRNA_7 RetrotransposonsSINESINE-tRNA197884549884745-
A01_SINE-tRNA_8 RetrotransposonsSINESINE-tRNA25511612351161489+
A01_SINE-tRNA_9 RetrotransposonsSINESINE-tRNA34011821851182524+
A01_SINE-tRNA_10 RetrotransposonsSINESINE-tRNA34116127091613049-
A01_SINE-tRNA_11 RetrotransposonsSINESINE-tRNA13217321411732272+
A01_SINE-tRNA_12 RetrotransposonsSINESINE-tRNA21617483091748524-
A01_SINE-tRNA_13 RetrotransposonsSINESINE-tRNA25617768651777120-
A01_SINE-tRNA_14 RetrotransposonsSINESINE-tRNA16518567701856934+
A01_SINE-tRNA_15 RetrotransposonsSINESINE-tRNA8319451091945191+
A01_SINE-tRNA_16 RetrotransposonsSINESINE-tRNA21221047102104921-
A01_SINE-tRNA_17 RetrotransposonsSINESINE-tRNA27321330192133291+
A01_SINE-tRNA_18 RetrotransposonsSINESINE-tRNA16125170122517172+
A01_SINE-tRNA_19 RetrotransposonsSINESINE-tRNA14226539332654074+
A01_SINE-tRNA_20 RetrotransposonsSINESINE-tRNA9426804122680505-

< 1 2 3 4 5 > Total 151


Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_1

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

212

Start:

331840  

End:

332051

Strand:

-

>A01_SINE-tRNA_1

GCTAACCGAGTATCCTGGCCCCACCGAGGTGGTCCAGACTAGAGACCGAAGTGAGCAAGGACGCTGCCAGGGCGTCACCATGTGGCTCACCGTGTAACGGTCTTCGGTCTCGGATGCTGCAGCCCATATGTAAATTCTGCAGTGGCCAAGGCTCGAACCCAGGGGCGGGCACTCCAGCTGGAGCTCCTATACCACTAGACCAAAGCAACTTG

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_2

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

234

Start:

495344  

End:

495577

Strand:

+

>A01_SINE-tRNA_2

GGTGGTAGTCTAGTGTTAGTTTTTTTTTGGACTTGGTGTGTATCCACATCAGTCTTAGATTTGATTTTTTTTTAAAATTAAATTATCATCATTTGACCAGTCTAAACTTGGGCTTTGGCATAAATAGTTTATACGGTGGATCCTAACAAATGATCGGTTCACTCTCTAGCATTAATCAGAAAGTATTTTAAACTCGGATCAAACAATGTGGTAACCAGTCCACTCTGTAATACT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_3

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

260

Start:

590481  

End:

590740

Strand:

-

>A01_SINE-tRNA_3

TAAACCCTATGGCTGATCCCGTAACGCACTTAGTGCTACATAGTGGACTAGCTACCACACTGTCTGATCCAAGTTTGGAATACATTCCGGTTAATGCCAAGAGGTGAATAGATCATCTATTACGATCCACCGTGTAAACCACTTGGACCGAAGCTCAAACCCAAACTGGCTAAATGATGATAATTTAGTTTCCAAAGAAAATCGAACCCATGTGAATGCACACCAAATCCCAAGAGATTGCCATTAGGCTACCACCACTT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_4

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

197

Start:

624723  

End:

624919

Strand:

+

>A01_SINE-tRNA_4

TTATTGTTACTTGGCCAATGTGGACTTGAGTTTCGGCCCAAGTGATTTATATGGTGGACCGTAACAGATGATCAGTCCACCCTTGACATTAGTCGAAAGGTATTCCAAACTCGAGTCAAGTAGTAGTATGGTATACTTTCAGCTAATCCACTCTATAGCATTAAATGTATTCTTTTCCGGAACGACCGGATCAACCG

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_5

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

86

Start:

757434  

End:

757519

Strand:

-

>A01_SINE-tRNA_5

AACACTGATTTATTATGATCTTACAATTATGATATAGGAAGATTACATAGACGATTTGACAACCGACAATAGTAGTTTGGTTTATG

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_6

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

232

Start:

879189  

End:

879420

Strand:

+

>A01_SINE-tRNA_6

GCTTGGTGTGTACTATTTTTTATTTCCGTTCGAATTAGATTATCATCATTTTTGGTCAATTTTGATTTGAGTTTTGGTATAAGTGGTTTATATAGTGAATTGTAACAGATGATCGGTTCACCTTCTGACATTAGGTGAAAAATATTTTAAATTCGGATCAGACAACGTAGTAGCCAGCAATTCACTATGTATCATTAAGCGTGTTTCGACCGACTCTATCGATAGAATTTAT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_7

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

197

Start:

884549  

End:

884745

Strand:

-

>A01_SINE-tRNA_7

TGATCCGAATTTAGAATACCTTTGATTAGTACCAGAAAATAGATCGATCGTCTGTTAAATCTCATTATTTTAACCATTGGGTTGAAATCGTCTAACCTGGCTAGACGAAGATAATTTAATTTTTCAAAGGAATCAAATCGAATATTAATGTGAGTGGACACCAAACTTTAAGAAATTAGCAATAAATTATCTAACCA

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_8

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

255

Start:

1161235  

End:

1161489

Strand:

+

>A01_SINE-tRNA_8

TCTTAGGATTTGGTGTGTATCCACATTAGTCATGAGTTTGATTCTCTTTGAATTAAATTATCACTATTTGGCTAGTCTAGTTTCAAAATTGGGCCTAAATAATTTACATATGAACCGTAACAGATTATCGGTCTATCTCTGATATTAGTCGGAAATTGTTCCAAACTCGGGTCAGACAGTGTGATATGTTTTGGGACTAATTAATTATGTAACACTAACTGTGTTTTTTTTCGGAGCTGACCGGATCCGTCTATA

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_9

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

340

Start:

1182185  

End:

1182524

Strand:

+

>A01_SINE-tRNA_9

GTGGAAGCACCGTAGCCTATTGGTTAAGGTTTAAAGGCTTCTACATCAGGTTAGGGATTCGAATCCTAGACTATGCAATTTATTGCAGATTACAGGAAATCCAAGTTTCAAGTCCCGGAGAAAGCGGTTTATTAAACAATTATGCAGACTACAGAGGAAAGGCTTGCAAGGGATCTTCGACATGGTGCAAGTAAATCTGGCCAGGCGTGGATCTTCATAGGACGGCTCAGGTGATGCAGTTAGGCGTAGTTCTTCATAAGGCAGGTAGTATTGTCGGTTGTTGAATCGTCTATGTAATCTTTCCTATATCATAATTGTAAGATCGTAATAAATCAGCGTT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_10

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

341

Start:

1612709  

End:

1613049

Strand:

-

>A01_SINE-tRNA_10

AACGCTGATTTATTACGATCTTACAATTATGATATAGGAAAGATTACATAAACGATTCTACAACCGACAATACTACCTGCCTTATGAAGACCTACGCCTAACTGCATCACATGAACCGTCCTATGAAGATCCACGCCTGACCAGATTTACTTGCATCATGTTGAAGATCCCTTGCAAGCCTTTCCTCTGTAGTCTGCATAATTGTTTAATAAACCGCTTTCTCCGGGACTTGAAACCTGGATTTCCTGTAATATGCAATAAATTGCATAGTCTAAGATTCGAACCCTAGACCTGGGTGTAAAAGCTTTTAAACCTTAACCAATAGGCTACGGTGCTTCCAC

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_11

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

132

Start:

1732141  

End:

1732272

Strand:

+

>A01_SINE-tRNA_11

CAACTGGAAAGGATTCTGGCCATTATGTCAGAGGTCCCTAGTTCGAGTGACCATTGGGACGAAACTAATATTACATGCTGTGGTTTCGGGCCTATGAGGATTACAAGATTTGGCCCCGAACCTCTTGGTATT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_12

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

216

Start:

1748309  

End:

1748524

Strand:

-

>A01_SINE-tRNA_12

ATAACCGAGTGTCCTGGCCCCACCGTGGTGGTCCAGACTAGAGACCGAACCCTTTAGCAGCGCGGACGCACACCCGAAGGTGGGTCATGGCCAGGTAACGGTCTTCGATCTCGGGCGCCAGAGCAAGTCCGCATGTAAATTCCCTGGTGGCCAGTGCGAATCGAACCCGGGACCGTACTTGCAGCTGCGAGCCGTTTACCACCAGACTAACTCGTC

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_13

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

256

Start:

1776865  

End:

1777120

Strand:

-

>A01_SINE-tRNA_13

AACGTCTGATTAATTATGCTATTACAACGATGAGAAATATTACATAGACGATTCTACAGCCGACAATTCTCGCTCCGAGCCGCCCTATGAGATCCATGTTCGATGATACGCTCTTGCACCATGCTGAAGACCTCTTGTAACCATTTTTCTCTATGATCTGCATAATTTGCGTTTTCTGGGGTTTGAACCCCAGACCTCCTGGTGTAGAAGCATTAATGAACCCTTAGTCAAACCACTGGACTAAGGGGGCTTCCAC

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_14

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

165

Start:

1856770  

End:

1856934

Strand:

+

>A01_SINE-tRNA_14

GTCACCAGGGTTCGAGTCCACTGGGGAATTAATATTTCGGCACCCCTAGGGACAGGGGACCCGACACGTGGGCTGAAAACCGACACGTGGGCTGAAAACGTAGGCTGCTAACACGAGGCTAGTCTGGACCCATTTTTGTGGGAGCCATGATACCCATGTATAATT

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_15

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

83

Start:

1945109  

End:

1945191

Strand:

+

>A01_SINE-tRNA_15

AAGAACTCTGAGTATTGTGTCAGAGGTCCCCAGTTCGAGTGACAGCTGGAACGAAACTAATATTACATGTTGTAGTTTCGAGC

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_16

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

212

Start:

2104710  

End:

2104921

Strand:

-

>A01_SINE-tRNA_16

GCTAACCGAGTATCCTGGCCCCACCGAGGTGGTCCAGACTAGAGACCGAAGTGAGCAAGGACGCTGCCAGGGCGTCACCATGTGGCTCACCGTGTAACGGTCTTCGGTCTCGGATGCTGCAGCCCATATGTAAATTCCGCAGTGGCCAAGGCTCGAACCCAGGGGCGGGCACTCCAGCTGGAGTTCCTATACCACTAGACCAAAGCAACTTG

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_17

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

273

Start:

2133019  

End:

2133291

Strand:

+

>A01_SINE-tRNA_17

AGACTATGCAAAATTTATTGCAGATTACAGGAAATCCAGGTTTCAAGTCCCGGAGAGAGCGGTTTATTAAACAATTATGTAGACTACAGAGGAAATGCTTGCAAGGGATCTTCAACATGGTGCAAGTACATCTGGTCAGGCGTGGATCTTCATAGGACTGCTCAGGTGATGCAGTTAGGCGTAGGTCTTCATAAGGCAGATAGTATTGTCGGTTGTCGAATCGTCTATGTAATATTTCATATATCATAATTGTAAGATCATAATAAATCAGCG

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_18

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

161

Start:

2517012  

End:

2517172

Strand:

+

>A01_SINE-tRNA_18

AACCAAGCGCTCGTAGCTTGGTGGTAAAGGAGGTACAGCTGTACTGCCCGCCACCCGGGTTCGAGTCTTGGCCACAACGGATTTAACATCCCTTCCGTTGGGGCGCTGGACCCCTTTCGGAGGATAGTTGGGATTGTGGTTGCCCAGATACCAGAGTTATC

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_19

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

142

Start:

2653933  

End:

2654074

Strand:

+

>A01_SINE-tRNA_19

CAAGTGGTTTTGGCATAGTGGTAAAGGGGCTCCAGCTGGAGCTCCGCTATGGGTTCGATTCCTCTTGGCCACCCATGGACGTCTTAAGTGGCAAGAAAACCCGAATTTCTATGGGCTTCGTAGTGATTAGTCATTGGACCTA

Brassica rapa (Chiifu_V3.0)

ID:

A01_SINE-tRNA_20

Class:

Retrotransposons

Order:

SINE

Superfamily:

SINE-tRNA

Length:

94

Start:

2680412  

End:

2680505

Strand:

-

>A01_SINE-tRNA_20

TAGCCAAACAACAATAATTTAGTTTCTAATGAAAATCAAATTTATGACGACGCCGAACCTTTAGAGATTACCACACTACCACCACCGCTTGATT